Wall clock time and date at job start Tue Mar 31 2020 14:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48503 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47331 * 299.99885 * 3 2 1 6 6 H 1.48502 * 109.47066 * 60.00376 * 3 2 1 7 7 C 1.37882 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46895 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.47215 * 180.02562 * 11 10 9 13 13 C 1.42901 * 114.00062 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.76298 * 26.80369 * 13 12 11 15 15 C 1.55136 * 110.71071 * 263.60687 * 13 12 11 16 16 C 1.54908 * 101.65289 * 205.96375 * 15 13 12 17 17 N 1.47849 * 104.79550 * 37.06744 * 16 15 13 18 18 C 1.46903 * 110.99761 * 213.63517 * 17 16 15 19 19 C 1.50703 * 109.47143 * 285.29008 * 18 17 16 20 20 C 1.38232 * 120.00691 * 104.42995 * 19 18 17 21 21 C 1.38221 * 120.01263 * 180.02562 * 20 19 18 22 22 C 1.38258 * 120.02627 * 359.95897 * 21 20 19 23 23 C 1.38198 * 120.01382 * 0.04107 * 22 21 20 24 24 C 1.38326 * 120.00257 * 284.45080 * 19 18 17 25 25 Cl 1.73596 * 120.01798 * 359.95972 * 24 19 18 26 26 C 1.47438 * 108.56643 * 335.90564 * 17 16 15 27 27 H 0.97003 * 119.99445 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46818 * 60.00006 * 9 7 2 29 29 H 1.08996 * 109.46911 * 300.00057 * 9 7 2 30 30 H 1.09005 * 109.46850 * 60.00429 * 10 9 7 31 31 H 1.08996 * 109.47773 * 300.00001 * 10 9 7 32 32 H 1.09006 * 109.46751 * 60.00156 * 11 10 9 33 33 H 1.09000 * 109.47509 * 300.00383 * 11 10 9 34 34 H 1.09005 * 110.98898 * 324.04982 * 15 13 12 35 35 H 1.08992 * 110.99520 * 87.82901 * 15 13 12 36 36 H 1.08997 * 110.37699 * 278.23596 * 16 15 13 37 37 H 1.09001 * 110.36938 * 155.89464 * 16 15 13 38 38 H 1.08995 * 109.46771 * 165.29037 * 18 17 16 39 39 H 1.09000 * 109.46746 * 45.28630 * 18 17 16 40 40 H 1.07998 * 119.99277 * 0.02595 * 20 19 18 41 41 H 1.08000 * 119.98716 * 179.97438 * 21 20 19 42 42 H 1.08006 * 119.99501 * 180.02562 * 22 21 20 43 43 H 1.08003 * 120.00267 * 180.25201 * 23 22 21 44 44 H 1.08995 * 109.89153 * 120.39721 * 26 17 16 45 45 H 1.09003 * 109.88844 * 241.42570 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 8 2.4085 -6.0733 0.0018 13 6 1.7939 -7.3634 0.0030 14 1 0.8063 -7.3214 -0.4564 15 6 1.7042 -7.9271 1.4456 16 6 1.6846 -9.4538 1.1843 17 7 2.6044 -9.6536 0.0441 18 6 2.1500 -10.7579 -0.8116 19 6 2.4360 -12.0715 -0.1306 20 6 1.4073 -12.7840 0.4568 21 6 1.6695 -13.9886 1.0819 22 6 2.9606 -14.4820 1.1193 23 6 3.9898 -13.7705 0.5325 24 6 3.7279 -12.5642 -0.0928 25 17 5.0202 -11.6702 -0.8307 26 6 2.6876 -8.3943 -0.7181 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8717 -3.6044 0.8906 31 1 2.8718 -3.6045 -0.8894 32 1 0.8531 -5.0450 -0.8887 33 1 0.8536 -5.0446 0.8913 34 1 2.5785 -7.6424 2.0310 35 1 0.7863 -7.6023 1.9353 36 1 0.6786 -9.7811 0.9221 37 1 2.0439 -9.9933 2.0606 38 1 2.6779 -10.7201 -1.7644 39 1 1.0781 -10.6649 -0.9860 40 1 0.3986 -12.3994 0.4273 41 1 0.8656 -14.5447 1.5410 42 1 3.1648 -15.4235 1.6076 43 1 4.9975 -14.1581 0.5583 44 1 3.7185 -8.0409 -0.7391 45 1 2.3292 -8.5521 -1.7353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:46 Heat of formation + Delta-G solvation = -53.890642 kcal Electronic energy + Delta-G solvation = -23915.927662 eV Core-core repulsion = 20343.779609 eV Total energy + Delta-G solvation = -3572.148054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83700 -39.88817 -38.14444 -37.24398 -35.86610 -34.04922 -33.22967 -31.64348 -30.87126 -29.68307 -28.27135 -26.35733 -24.85502 -23.62373 -22.73512 -22.30444 -21.82279 -21.55877 -18.66720 -18.06896 -17.78659 -17.14209 -16.70214 -16.56360 -16.48119 -16.23869 -15.57922 -15.38233 -14.75882 -14.72455 -14.51015 -14.31701 -14.22301 -14.15071 -13.68621 -13.46041 -13.22027 -12.94648 -12.85869 -12.63002 -12.52702 -12.42584 -12.35488 -12.23239 -12.11645 -12.05873 -11.71296 -11.61909 -11.52986 -11.47482 -11.19007 -10.57945 -10.44515 -9.86372 -9.57216 -9.30836 -8.22700 -6.33426 0.24867 0.33744 1.33548 1.39875 1.39930 1.53876 2.38484 2.54015 2.73178 3.10720 3.11516 3.58531 3.70502 3.77675 3.85908 4.00747 4.14926 4.15855 4.26265 4.28237 4.31336 4.36742 4.46807 4.53120 4.58195 4.59150 4.64310 4.81386 4.84392 4.85850 4.89826 4.99297 5.02605 5.06185 5.13620 5.16225 5.34769 5.43773 5.48534 5.51992 5.68487 5.81290 5.89017 5.93133 6.04162 6.18857 6.34736 6.82297 7.35708 8.89490 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.001857 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.201852 B =15078.005776 C =15624.407994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.097 4.097 11 C 0.076 3.924 12 O -0.392 6.392 13 C 0.061 3.939 14 H 0.077 0.923 15 C -0.149 4.149 16 C 0.055 3.945 17 N -0.522 5.522 18 C 0.087 3.913 19 C -0.083 4.083 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.031 4.031 25 Cl -0.075 7.075 26 C 0.054 3.946 27 H 0.265 0.735 28 H -0.002 1.002 29 H -0.003 1.003 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.073 0.927 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -33.856 1.120 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.135 4.135 11 C 0.000 4.000 12 O -0.311 6.311 13 C 0.002 3.998 14 H 0.095 0.905 15 C -0.187 4.187 16 C -0.073 4.073 17 N -0.247 5.247 18 C -0.040 4.040 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.058 4.058 25 Cl -0.047 7.047 26 C -0.074 4.074 27 H 0.074 0.926 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.091 0.909 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.220 -33.759 1.215 33.934 hybrid contribution -0.568 1.437 -0.403 1.597 sum 2.651 -32.322 0.812 32.441 Atomic orbital electron populations 1.70091 1.07693 1.27817 1.51561 1.25978 0.95847 1.03356 0.94618 0.85369 0.78970 0.78621 0.77916 1.18817 1.20176 1.20174 1.21687 0.93554 0.92316 1.50732 0.92361 1.18920 0.94200 0.92446 0.95331 1.21399 0.98630 0.92300 1.01173 1.22508 0.91600 0.85989 0.99943 1.87904 1.34248 1.13944 1.94994 1.23485 0.96546 0.83362 0.96381 0.90519 1.23162 1.02967 0.95696 0.96858 1.22957 0.95146 0.94680 0.94473 1.63554 1.48745 1.03438 1.08935 1.21285 0.99623 0.87664 0.95459 1.19717 0.91975 0.96528 1.00179 1.21295 0.98979 0.95212 0.97002 1.21558 0.97735 0.95782 0.98513 1.21458 0.92233 1.00571 0.98482 1.21308 1.01343 0.93444 0.98396 1.20996 0.89193 0.94587 1.01029 1.98375 1.49468 1.75573 1.81240 1.22710 1.00593 0.87943 0.96179 0.92648 0.98406 0.98423 0.92939 0.92834 0.93184 0.93330 0.91227 0.89854 0.91698 0.90051 0.89871 0.91904 0.83844 0.83008 0.82852 0.84295 0.90911 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.10 -4.27 5.52 30.59 0.17 -4.10 16 11 C 0.08 2.73 5.78 71.98 0.42 3.15 16 12 O -0.39 -13.14 10.07 -148.98 -1.50 -14.64 16 13 C 0.06 1.54 3.44 31.77 0.11 1.65 16 14 H 0.08 1.76 7.83 -2.38 -0.02 1.75 16 15 C -0.15 -3.31 6.80 31.98 0.22 -3.09 16 16 C 0.05 0.98 6.35 86.77 0.55 1.53 16 17 N -0.52 -10.47 5.04 -890.10 -4.49 -14.96 16 18 C 0.09 1.44 4.15 85.56 0.35 1.79 16 19 C -0.08 -1.33 5.05 -19.84 -0.10 -1.43 16 20 C -0.11 -1.27 9.67 22.26 0.22 -1.06 16 21 C -0.12 -1.14 10.05 22.27 0.22 -0.91 16 22 C -0.11 -1.12 10.05 22.27 0.22 -0.90 16 23 C -0.13 -1.78 9.83 22.29 0.22 -1.56 16 24 C -0.03 -0.55 6.31 22.32 0.14 -0.41 16 25 Cl -0.08 -1.52 27.57 -2.72 -0.07 -1.59 16 26 C 0.05 1.22 6.62 86.65 0.57 1.80 16 27 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.72 8.12 -2.38 -0.02 1.70 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 0.94 7.53 -2.39 -0.02 0.92 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.45 7.28 -2.39 -0.02 1.43 16 39 H 0.06 0.85 7.50 -2.39 -0.02 0.83 16 40 H 0.14 1.18 8.00 -2.91 -0.02 1.16 16 41 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 42 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16 43 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 44 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 45 H 0.07 1.44 7.47 -2.39 -0.02 1.42 16 Total: -1.00 -67.11 383.12 1.35 -65.76 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.95 Total: 8.06 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.16 Total: -32.95 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -4.20 Total: -71.50 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.50 Total: -14.64 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.59 kcal Total: -67.11 1.35 -65.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.868 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds