Wall clock time and date at job start Tue Mar 31 2020 14:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48506 * 109.47165 * 269.99980 * 3 2 1 5 5 H 1.48503 * 109.47137 * 29.99861 * 3 2 1 6 6 H 1.48501 * 109.47238 * 149.99975 * 3 2 1 7 7 C 1.37884 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99793 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46749 * 183.06553 * 9 7 2 11 11 C 1.46900 * 110.99938 * 164.39709 * 10 9 7 12 12 C 1.50705 * 109.47097 * 288.39209 * 11 10 9 13 13 C 1.38239 * 119.98450 * 89.99710 * 12 11 10 14 14 C 1.38216 * 120.01278 * 179.97438 * 13 12 11 15 15 C 1.38347 * 119.98451 * 0.30438 * 14 13 12 16 16 Cl 1.73603 * 120.01362 * 179.69428 * 15 14 13 17 17 C 1.38355 * 119.97420 * 359.46870 * 15 14 13 18 18 C 1.38211 * 119.98803 * 0.50342 * 17 15 14 19 19 C 1.46897 * 111.00150 * 288.34918 * 10 9 7 20 20 C 1.53006 * 109.47235 * 157.82417 * 19 10 9 21 21 H 1.08998 * 109.47755 * 307.15372 * 20 19 10 22 22 C 1.53092 * 109.48227 * 187.12893 * 20 19 10 23 23 C 1.53175 * 109.16432 * 182.40908 * 22 20 19 24 24 C 1.53180 * 109.03646 * 56.97923 * 23 22 20 25 25 C 1.53086 * 109.16258 * 303.02408 * 24 23 22 26 26 O 1.42898 * 109.42768 * 57.60003 * 25 24 23 27 27 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47002 * 63.07580 * 9 7 2 29 29 H 1.08993 * 109.47813 * 303.06930 * 9 7 2 30 30 H 1.08999 * 109.47425 * 168.39445 * 11 10 9 31 31 H 1.08997 * 109.47284 * 48.39569 * 11 10 9 32 32 H 1.08003 * 119.99572 * 0.02562 * 13 12 11 33 33 H 1.08003 * 120.00355 * 180.02562 * 14 13 12 34 34 H 1.08003 * 120.00660 * 180.25582 * 17 15 14 35 35 H 1.07998 * 119.99750 * 179.76555 * 18 17 15 36 36 H 1.09001 * 109.47396 * 277.82142 * 19 10 9 37 37 H 1.09003 * 109.47150 * 37.82915 * 19 10 9 38 38 H 1.08994 * 109.52088 * 302.32098 * 22 20 19 39 39 H 1.09001 * 109.52082 * 62.50402 * 22 20 19 40 40 H 1.08998 * 109.54630 * 176.85326 * 23 22 20 41 41 H 1.09009 * 109.53821 * 297.11771 * 23 22 20 42 42 H 1.09005 * 109.51535 * 62.92543 * 24 23 22 43 43 H 1.09000 * 109.51889 * 183.11053 * 24 23 22 44 44 H 1.09010 * 109.48155 * 177.59016 * 25 24 23 45 45 H 1.09004 * 109.48308 * 297.60746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2038 -3.6148 0.0729 11 6 1.5249 -4.8634 0.4442 12 6 1.1175 -4.8018 1.8939 13 6 -0.1207 -4.2957 2.2427 14 6 -0.4951 -4.2395 3.5720 15 6 0.3722 -4.6840 4.5540 16 17 -0.0941 -4.6063 6.2244 17 6 1.6094 -5.1947 4.2039 18 6 1.9825 -5.2510 2.8743 19 6 2.9331 -3.7685 -1.1930 20 6 4.2446 -4.5144 -0.9387 21 1 4.7975 -4.0163 -0.1423 22 6 5.0854 -4.5193 -2.2181 23 6 6.3688 -5.3189 -1.9732 24 6 5.9970 -6.7329 -1.5164 25 6 5.1209 -6.6424 -0.2643 26 8 3.9601 -5.8602 -0.5518 27 1 -0.4850 0.8401 -0.0004 28 1 0.6659 -2.5809 -0.9166 29 1 0.5839 -2.5337 0.8608 30 1 2.2018 -5.7041 0.2925 31 1 0.6388 -4.9939 -0.1769 32 1 -0.7960 -3.9450 1.4763 33 1 -1.4627 -3.8444 3.8443 34 1 2.2852 -5.5457 4.9698 35 1 2.9497 -5.6462 2.6012 36 1 2.3236 -4.3350 -1.8970 37 1 3.1495 -2.7846 -1.6094 38 1 4.5171 -4.9808 -3.0256 39 1 5.3407 -3.4952 -2.4902 40 1 6.9459 -5.3738 -2.8962 41 1 6.9611 -4.8298 -1.1998 42 1 5.4471 -7.2392 -2.3099 43 1 6.9042 -7.2918 -1.2868 44 1 4.8179 -7.6442 0.0406 45 1 5.6854 -6.1726 0.5412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207959220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:39 Heat of formation + Delta-G solvation = -38.242209 kcal Electronic energy + Delta-G solvation = -25645.366697 eV Core-core repulsion = 22073.897210 eV Total energy + Delta-G solvation = -3571.469487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.46273 -38.92075 -36.61459 -35.89287 -33.51034 -32.64269 -31.95190 -30.70350 -30.41403 -27.36375 -26.57477 -24.32129 -23.81078 -22.55965 -21.92700 -21.16522 -20.13286 -19.79934 -16.74309 -16.47982 -16.09950 -15.87444 -15.13637 -15.01928 -14.78784 -14.62986 -14.42401 -14.15089 -13.55769 -13.35685 -13.20136 -13.13750 -12.90043 -12.55786 -12.33707 -12.10958 -11.67955 -11.48023 -11.24967 -11.12644 -11.06347 -11.03515 -10.90137 -10.76404 -10.69416 -10.60282 -10.47767 -10.40042 -10.10445 -9.72350 -9.19821 -9.09014 -8.62626 -8.39957 -8.17912 -7.23783 -6.01897 -4.02255 1.54175 1.70622 2.39779 3.31023 3.38134 3.41984 3.97954 4.01652 4.43932 4.75210 4.83006 4.91300 4.99745 5.13484 5.22789 5.29160 5.33965 5.35912 5.43635 5.54490 5.62264 5.70262 5.76861 5.78364 5.80912 5.91694 5.97838 6.00622 6.04879 6.05833 6.11945 6.26677 6.36496 6.40458 6.47163 6.57725 6.64482 6.68197 7.05309 7.21140 7.29223 7.33495 7.51287 7.82251 8.11772 8.22409 8.55478 9.04537 9.61420 11.08765 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007199 B = 0.005278 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3888.529997 B = 5304.116916 C = 8437.464057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.185 3.815 10 N -0.527 5.527 11 C 0.081 3.919 12 C -0.049 4.049 13 C -0.090 4.090 14 C -0.111 4.111 15 C -0.041 4.041 16 Cl -0.090 7.090 17 C -0.119 4.119 18 C -0.088 4.088 19 C 0.072 3.928 20 C 0.097 3.903 21 H 0.066 0.934 22 C -0.150 4.150 23 C -0.121 4.121 24 C -0.155 4.155 25 C 0.059 3.941 26 O -0.374 6.374 27 H 0.260 0.740 28 H -0.013 1.013 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.029 0.971 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.029 0.971 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 -13.895 1.617 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.060 3.940 10 N -0.250 5.250 11 C -0.047 4.047 12 C -0.050 4.050 13 C -0.109 4.109 14 C -0.130 4.130 15 C -0.068 4.068 16 Cl -0.061 7.061 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.057 4.057 20 C 0.039 3.961 21 H 0.084 0.916 22 C -0.189 4.189 23 C -0.158 4.158 24 C -0.192 4.192 25 C -0.018 4.018 26 O -0.293 6.293 27 H 0.070 0.930 28 H 0.005 0.995 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.047 0.953 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.907 -13.709 2.138 15.499 hybrid contribution 0.069 1.058 -0.471 1.160 sum 6.976 -12.651 1.667 14.543 Atomic orbital electron populations 1.69943 1.05988 1.26676 1.51107 1.24954 0.94828 0.99139 0.95551 0.86567 0.79906 0.83416 0.77949 1.20809 1.21293 1.19842 1.21133 0.93392 0.89932 1.49770 0.92069 1.19896 0.90516 0.87324 0.96249 1.62049 1.29581 1.03507 1.29901 1.21327 0.97777 0.95257 0.90320 1.19997 0.93064 0.95509 0.96382 1.21142 0.96862 0.97417 0.95433 1.20959 0.99563 1.00353 0.92133 1.20813 0.96436 1.05257 0.84247 1.98330 1.92424 1.97329 1.18051 1.20919 0.94840 1.01096 0.96876 1.20902 0.99159 0.99393 0.91228 1.22045 0.92556 0.99598 0.91482 1.22310 0.96836 0.82199 0.94751 0.91624 1.22185 0.96486 1.01014 0.99176 1.21567 0.97535 0.95470 1.01246 1.22177 1.00118 0.97532 0.99417 1.22483 0.87901 0.95910 0.95484 1.87914 1.29859 1.23505 1.88015 0.92993 0.99501 0.93980 0.88180 0.95329 0.85160 0.85497 0.85701 0.85432 0.95280 0.88464 0.91395 0.90748 0.91961 0.91930 0.91374 0.91532 0.89563 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.74 8.36 -34.44 -0.29 -14.03 16 8 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 9 C 0.18 4.62 4.55 -4.98 -0.02 4.60 16 10 N -0.53 -10.83 4.32 -237.51 -1.03 -11.86 16 11 C 0.08 1.45 4.91 -4.97 -0.02 1.43 16 12 C -0.05 -0.86 5.08 -104.62 -0.53 -1.39 16 13 C -0.09 -1.59 8.08 -39.59 -0.32 -1.91 16 14 C -0.11 -1.83 9.83 -39.55 -0.39 -2.22 16 15 C -0.04 -0.64 6.32 -39.50 -0.25 -0.89 16 16 Cl -0.09 -1.26 28.96 -51.86 -1.50 -2.76 16 17 C -0.12 -1.77 9.83 -39.55 -0.39 -2.16 16 18 C -0.09 -1.39 9.70 -39.59 -0.38 -1.77 16 19 C 0.07 1.31 4.64 -3.82 -0.02 1.29 16 20 C 0.10 1.46 2.86 -26.68 -0.08 1.38 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.15 -1.88 5.42 -26.59 -0.14 -2.02 16 23 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 24 C -0.15 -1.51 6.14 -26.59 -0.16 -1.67 16 25 C 0.06 0.65 6.84 37.20 0.25 0.91 16 26 O -0.37 -5.36 7.60 -35.23 -0.27 -5.63 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H -0.01 -0.34 8.06 -51.93 -0.42 -0.76 16 29 H 0.04 1.11 5.36 -51.93 -0.28 0.84 16 30 H 0.10 1.68 5.06 -51.93 -0.26 1.41 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 32 H 0.13 2.36 7.58 -52.48 -0.40 1.96 16 33 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 37 H 0.10 1.92 6.96 -51.93 -0.36 1.56 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -29.05 371.43 -11.64 -40.69 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.16 Total: 1.35 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.00 Total: -18.39 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.29 Total: -37.30 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.27 Total: -5.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.05 -11.64 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207959220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.448 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds