Wall clock time and date at job start Tue Mar 31 2020 14:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36215 * 119.96477 * 2 1 4 4 C 1.39027 * 121.13861 * 180.02562 * 3 2 1 5 5 C 1.38359 * 120.68853 * 359.97190 * 4 3 2 6 6 C 1.48173 * 120.34653 * 180.02562 * 5 4 3 7 7 N 1.30874 * 126.42303 * 132.88638 * 6 5 4 8 8 O 1.21296 * 110.07201 * 180.02562 * 7 6 5 9 9 C 1.33676 * 110.04817 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.42125 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.46752 * 269.97037 * 10 9 8 12 12 C 1.46904 * 111.00124 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47519 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99780 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00486 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99657 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00291 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46492 * 60.00843 * 17 15 13 19 19 H 1.48497 * 109.46997 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47480 * 300.00579 * 17 15 13 21 21 N 1.30949 * 107.15465 * 359.73221 * 9 8 7 22 22 C 1.41499 * 119.30787 * 0.02562 * 5 4 3 23 23 C 1.40236 * 121.26515 * 180.02562 * 22 5 4 24 24 C 1.36208 * 119.68315 * 180.02562 * 23 22 5 25 25 C 1.39326 * 120.93949 * 359.97438 * 24 23 22 26 26 C 1.36107 * 120.96777 * 359.97438 * 25 24 23 27 27 C 1.40531 * 119.97003 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47106 * 270.03990 * 1 2 3 29 29 H 1.08998 * 109.47334 * 30.04434 * 1 2 3 30 30 H 1.09005 * 109.46957 * 150.04268 * 1 2 3 31 31 H 1.08003 * 119.43540 * 359.97438 * 3 2 1 32 32 H 1.08006 * 119.65844 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47457 * 29.97274 * 10 9 8 34 34 H 1.09003 * 109.47035 * 149.97437 * 10 9 8 35 35 H 1.00903 * 111.00100 * 56.04882 * 11 10 9 36 36 H 1.09005 * 109.46811 * 300.00081 * 12 11 10 37 37 H 1.09000 * 109.47060 * 60.00008 * 12 11 10 38 38 H 0.96999 * 119.99826 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.16174 * 0.02562 * 23 22 5 40 40 H 1.07997 * 119.53244 * 180.27140 * 24 23 22 41 41 H 1.08005 * 119.51644 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.17418 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1873 1.1801 0.0000 4 6 3.5773 1.2086 -0.0005 5 6 4.3077 0.0334 -0.0005 6 6 5.7889 0.0726 -0.0005 7 7 6.5846 -0.6232 0.7711 8 8 7.7420 -0.3597 0.5213 9 6 7.8041 0.5499 -0.4563 10 6 9.0569 1.1376 -1.0533 11 7 9.4365 2.3435 -0.3053 12 6 10.6561 2.9454 -0.8606 13 6 11.0141 4.1767 -0.0691 14 1 10.3975 4.4815 0.7637 15 6 12.1293 4.9136 -0.4071 16 7 12.8803 4.5422 -1.4208 17 14 12.5726 6.4404 0.5737 18 1 12.8058 6.0670 1.9920 19 1 13.8055 7.0486 0.0123 20 1 11.4587 7.4193 0.4962 21 7 6.5726 0.8298 -0.8023 22 6 3.6254 -1.2062 -0.0005 23 6 4.3245 -2.4218 0.0001 24 6 3.6350 -3.5965 -0.0004 25 6 2.2418 -3.6093 -0.0009 26 6 1.5308 -2.4488 -0.0005 27 6 2.2090 -1.2174 0.0005 28 1 -0.3633 0.0007 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 1.6376 2.1097 -0.0004 32 1 4.0924 2.1579 -0.0001 33 1 9.8634 0.4066 -0.9977 34 1 8.8746 1.3990 -2.0957 35 1 9.5483 2.1398 0.6767 36 1 11.4740 2.2270 -0.8040 37 1 10.4845 3.2194 -1.9016 38 1 13.6647 5.0608 -1.6589 39 1 5.4045 -2.4266 0.0010 40 1 4.1759 -4.5312 0.0045 41 1 1.7184 -4.5541 -0.0009 42 1 0.4510 -2.4737 -0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211455067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:19 Heat of formation + Delta-G solvation = 110.726760 kcal Electronic energy + Delta-G solvation = -25207.686945 eV Core-core repulsion = 21541.569744 eV Total energy + Delta-G solvation = -3666.117201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.40870 -40.75721 -36.97097 -36.15785 -35.78546 -34.05337 -32.78077 -31.66349 -30.61984 -30.29665 -27.95323 -27.61428 -25.08099 -24.08251 -23.53900 -23.28363 -22.08347 -21.60283 -20.38455 -18.07067 -17.94378 -17.44682 -17.02153 -16.59269 -16.19323 -15.28683 -14.88826 -14.65215 -14.56559 -14.45470 -14.25113 -13.89552 -13.75454 -13.43298 -13.14332 -13.08305 -12.83714 -12.37344 -12.33818 -12.15676 -11.89812 -11.61825 -11.45767 -11.33825 -11.19632 -11.13836 -10.91785 -10.81875 -10.77276 -10.25990 -10.02982 -9.72199 -9.33848 -8.89752 -8.56512 -8.01652 -7.61796 -6.11098 -4.13681 0.08868 0.75752 1.19102 1.66174 2.34439 2.75110 2.92901 3.30947 3.34919 3.38165 3.47806 3.75318 4.19466 4.35960 4.38243 4.46434 4.58018 4.66667 4.74024 4.96295 5.00134 5.11090 5.15056 5.19484 5.23129 5.25674 5.26308 5.34743 5.51863 5.56019 5.67441 5.72567 5.83150 5.88963 5.89460 5.97401 6.06668 6.17146 6.28962 6.36494 6.52197 6.70207 6.98347 7.21501 7.61858 7.97061 8.10290 8.23460 8.37550 8.93431 9.51462 10.99840 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.002260 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.284254 B =12384.135661 C =13280.415769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.059 4.059 3 C -0.120 4.120 4 C -0.061 4.061 5 C -0.010 4.010 6 C 0.207 3.793 7 N -0.378 5.378 8 O 0.076 5.924 9 C 0.207 3.793 10 C 0.147 3.853 11 N -0.681 5.681 12 C 0.196 3.804 13 C -0.518 4.518 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.460 5.460 22 C -0.022 4.022 23 C -0.103 4.103 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.106 4.106 27 C -0.051 4.051 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.336 0.664 36 H -0.005 1.005 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 -15.052 1.829 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.012 4.012 6 C -0.063 4.063 7 N -0.085 5.085 8 O 0.016 5.984 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.314 5.314 12 C 0.071 3.929 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 N -0.193 5.193 22 C -0.023 4.023 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.051 4.051 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.013 0.987 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.405 -14.957 1.716 28.675 hybrid contribution 1.329 0.303 0.747 1.554 sum -23.076 -14.654 2.463 27.447 Atomic orbital electron populations 1.20880 0.90564 1.03279 1.02769 1.19863 0.96220 0.92153 0.97724 1.20652 0.93474 0.98035 1.01598 1.21204 0.93830 0.97595 0.95511 1.17236 0.85274 0.93473 1.05227 1.23756 0.96335 0.93767 0.92489 1.74997 0.89476 1.22294 1.21754 1.85281 1.22652 1.46457 1.44030 1.29113 0.97068 0.88283 0.86973 1.20528 0.86097 0.92910 0.98915 1.60775 1.41190 1.23002 1.06438 1.19642 0.83014 0.93783 0.96507 1.21063 1.09630 1.09581 1.15399 0.91862 1.24967 0.96050 0.98045 0.95332 1.69938 1.16343 1.39795 1.27434 0.86497 0.77724 0.82770 0.80059 1.20198 1.21276 1.20091 1.72151 0.99892 1.22635 1.24657 1.17814 0.92465 0.92489 0.99541 1.21120 1.00311 0.91617 0.99000 1.20897 0.94379 0.98089 0.99689 1.20871 0.94146 0.98348 1.00113 1.21051 0.99870 0.91347 1.00156 1.17792 0.91639 0.93699 1.01965 0.90616 0.90917 0.91063 0.85001 0.84687 0.91926 0.86832 0.84727 0.98730 0.94663 0.92683 0.85545 0.85797 0.85801 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.52 36.01 0.34 -0.37 16 2 C -0.06 -0.56 5.89 -104.49 -0.62 -1.18 16 3 C -0.12 -1.20 9.56 -40.02 -0.38 -1.58 16 4 C -0.06 -0.77 9.73 -39.24 -0.38 -1.16 16 5 C -0.01 -0.15 5.91 -104.53 -0.62 -0.77 16 6 C 0.21 3.38 6.89 -156.07 -1.07 2.30 16 7 N -0.38 -6.20 10.64 30.99 0.33 -5.87 16 8 O 0.08 1.21 11.29 18.02 0.20 1.41 16 9 C 0.21 3.37 8.01 -12.98 -0.10 3.27 16 10 C 0.15 2.39 6.31 -4.98 -0.03 2.36 16 11 N -0.68 -13.76 6.48 -116.34 -0.75 -14.51 16 12 C 0.20 4.81 5.44 -4.98 -0.03 4.78 16 13 C -0.52 -14.15 9.32 -34.44 -0.32 -14.47 16 14 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 N -0.46 -7.96 11.58 -9.87 -0.11 -8.08 16 22 C -0.02 -0.29 5.76 -106.61 -0.61 -0.91 16 23 C -0.10 -1.30 9.27 -39.56 -0.37 -1.66 16 24 C -0.11 -1.13 9.95 -39.91 -0.40 -1.53 16 25 C -0.12 -1.00 9.95 -39.94 -0.40 -1.40 16 26 C -0.11 -0.94 9.27 -39.46 -0.37 -1.31 16 27 C -0.05 -0.57 5.74 -106.85 -0.61 -1.18 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 6.39 -51.93 -0.33 0.02 16 31 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.34 6.52 8.72 -39.29 -0.34 6.18 16 36 H -0.01 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.13 1.72 6.15 -52.49 -0.32 1.39 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 42 H 0.13 0.79 6.34 -52.48 -0.33 0.46 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -31.19 360.85 -10.35 -41.54 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.10 Total: 2.26 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -6.06 Total: -13.28 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.20 Total: -53.58 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.19 -10.35 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.264 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds