Wall clock time and date at job start Tue Mar 31 2020 15:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33465 * 125.70832 * 2 1 4 4 C 1.32499 * 109.15684 * 179.97438 * 3 2 1 5 5 C 1.41555 * 132.33382 * 180.31228 * 4 3 2 6 6 N 1.39591 * 120.39553 * 359.95791 * 5 4 3 7 7 C 1.39732 * 119.99999 * 66.27167 * 6 5 4 8 8 C 1.38787 * 120.10836 * 5.71477 * 7 6 5 9 9 C 1.38176 * 119.98918 * 180.02562 * 8 7 6 10 10 C 1.38359 * 120.21045 * 0.02562 * 9 8 7 11 11 C 1.38178 * 120.21617 * 359.97438 * 10 9 8 12 12 C 1.38718 * 120.00719 * 359.71377 * 11 10 9 13 13 O 1.35777 * 120.10450 * 180.29758 * 12 11 10 14 14 C 1.34799 * 117.00010 * 5.90773 * 13 12 11 15 15 H 1.07997 * 120.00444 * 354.90260 * 14 13 12 16 16 C 1.38617 * 120.00349 * 174.89890 * 14 13 12 17 17 N 1.31590 * 119.99493 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00257 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47075 * 60.00187 * 18 16 14 20 20 H 1.48500 * 109.47423 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47071 * 300.00307 * 18 16 14 22 22 C 1.36686 * 119.20174 * 180.19634 * 5 4 3 23 23 C 1.40381 * 119.62777 * 359.46421 * 22 5 4 24 24 C 1.34940 * 120.37263 * 0.27488 * 23 22 5 25 25 N 1.36729 * 120.75110 * 359.97438 * 24 23 22 26 26 C 1.35158 * 125.70561 * 179.97438 * 2 1 3 27 27 C 1.50697 * 126.41214 * 0.02995 * 26 2 1 28 28 H 1.09004 * 109.46791 * 89.97514 * 1 2 3 29 29 H 1.08997 * 109.47343 * 209.97634 * 1 2 3 30 30 H 1.08997 * 109.47094 * 329.98588 * 1 2 3 31 31 H 0.97006 * 120.00051 * 246.27306 * 6 5 4 32 32 H 1.07998 * 120.00797 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.89249 * 179.97438 * 9 8 7 34 34 H 1.08000 * 119.89063 * 179.97438 * 10 9 8 35 35 H 1.07999 * 119.99168 * 180.02562 * 11 10 9 36 36 H 0.97000 * 119.99498 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.18710 * 179.73687 * 22 5 4 38 38 H 1.08001 * 119.81499 * 180.25812 * 23 22 5 39 39 H 1.07996 * 119.62680 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46769 * 269.96870 * 27 26 2 41 41 H 1.08995 * 109.47521 * 29.97251 * 27 26 2 42 42 H 1.09000 * 109.47140 * 149.97690 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2860 1.0837 0.0000 4 6 3.5561 0.7063 0.0006 5 6 4.7680 1.4377 0.0065 6 7 4.7505 2.8335 0.0125 7 6 4.2523 3.5212 1.1222 8 6 3.8847 2.8251 2.2652 9 6 3.3918 3.5076 3.3610 10 6 3.2624 4.8846 3.3230 11 6 3.6257 5.5862 2.1894 12 6 4.1277 4.9108 1.0866 13 8 4.4909 5.5989 -0.0261 14 6 4.4549 6.9444 0.0474 15 1 4.0692 7.4267 0.9334 16 6 4.9129 7.7091 -1.0141 17 7 5.3825 7.1215 -2.0938 18 14 4.8623 9.5736 -0.9125 19 1 5.6831 10.0291 0.2381 20 1 5.4045 10.1527 -2.1679 21 1 3.4585 10.0213 -0.7273 22 6 5.9555 0.7609 0.0013 23 6 5.9542 -0.6429 0.0017 24 6 4.7893 -1.3241 0.0015 25 7 3.5927 -0.6627 0.0015 26 6 2.2959 -1.0975 0.0005 27 6 1.8331 -2.5317 0.0005 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5140 31 1 5.0842 3.3261 -0.7537 32 1 3.9832 1.7501 2.2981 33 1 3.1059 2.9643 4.2495 34 1 2.8762 5.4128 4.1822 35 1 3.5236 6.6611 2.1639 36 1 5.7034 7.6566 -2.8365 37 1 6.8896 1.3030 0.0015 38 1 6.8907 -1.1808 0.0018 39 1 4.8024 -2.4040 0.0021 40 1 1.7217 -2.8774 1.0282 41 1 0.8746 -2.6043 -0.5133 42 1 2.5686 -3.1508 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:31 Heat of formation + Delta-G solvation = 74.676294 kcal Electronic energy + Delta-G solvation = -26662.134780 eV Core-core repulsion = 22994.454313 eV Total energy + Delta-G solvation = -3667.680467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.82088 -40.94045 -39.00308 -38.07188 -36.67733 -34.26708 -33.83947 -33.23393 -31.13046 -30.70362 -29.45649 -28.54253 -27.30408 -27.05281 -24.08721 -23.48199 -22.91792 -22.39000 -21.11284 -19.76632 -19.21451 -18.47675 -17.99040 -17.43018 -17.29117 -16.94327 -16.30288 -16.24919 -15.72481 -15.53644 -15.30541 -14.86319 -14.55597 -14.23610 -14.18867 -14.06581 -13.96680 -13.73825 -13.51614 -13.36367 -13.04919 -12.97661 -12.93867 -12.57976 -12.54686 -12.33964 -12.31062 -12.12773 -11.83652 -11.26749 -11.15887 -10.89658 -10.75163 -9.55815 -9.27267 -8.68161 -8.42237 -8.12671 -6.05150 -0.25163 0.30757 0.67131 0.83529 1.35230 1.45888 1.50650 1.61232 1.88725 2.19187 2.44033 2.55856 2.89778 3.21374 3.27902 3.46021 3.60582 3.82668 3.98787 4.10063 4.13383 4.27767 4.29388 4.33605 4.54101 4.59064 4.60619 4.75971 4.82004 4.84621 4.93862 4.98183 5.03604 5.09497 5.10690 5.14199 5.15414 5.27232 5.44284 5.55888 5.64539 5.74713 5.81884 6.01753 6.12878 6.21424 6.52206 6.68518 7.03219 7.04073 7.84688 8.80812 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.003560 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.253677 B = 7862.462704 C = 8195.731432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.018 3.982 3 N -0.523 5.523 4 C 0.188 3.812 5 C 0.170 3.830 6 N -0.686 5.686 7 C 0.148 3.852 8 C -0.135 4.135 9 C -0.151 4.151 10 C -0.119 4.119 11 C -0.211 4.211 12 C 0.063 3.937 13 O -0.228 6.228 14 C -0.406 4.406 15 H 0.097 0.903 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.015 2.985 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.261 1.261 22 C -0.124 4.124 23 C -0.117 4.117 24 C 0.037 3.963 25 N -0.357 5.357 26 C -0.066 4.066 27 C -0.063 4.063 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.406 0.594 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.122 0.878 36 H 0.270 0.730 37 H 0.150 0.850 38 H 0.199 0.801 39 H 0.208 0.792 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -21.865 6.404 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.244 5.244 4 C -0.058 4.058 5 C 0.072 3.928 6 N -0.314 5.314 7 C 0.050 3.950 8 C -0.158 4.158 9 C -0.170 4.170 10 C -0.138 4.138 11 C -0.231 4.231 12 C 0.011 3.989 13 O -0.135 6.135 14 C -0.483 4.483 15 H 0.114 0.886 16 C -0.219 4.219 17 N -0.559 5.559 18 Si 0.835 3.165 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.186 1.186 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.084 4.084 25 N -0.030 5.030 26 C -0.180 4.180 27 C -0.120 4.120 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.127 0.873 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.168 0.832 38 H 0.216 0.784 39 H 0.224 0.776 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.710 -21.249 6.050 22.259 hybrid contribution 0.423 0.976 -0.712 1.280 sum -2.287 -20.273 5.338 21.089 Atomic orbital electron populations 1.20190 0.85359 1.03652 1.03089 1.21433 0.98257 0.87718 1.04000 1.70642 0.99661 1.31299 1.22810 1.21165 0.94098 0.81833 1.08671 1.16621 0.89657 0.83246 1.03226 1.41413 1.69706 1.01955 1.18327 1.17202 1.01272 0.87597 0.88973 1.20238 1.05037 0.98042 0.92441 1.20839 1.03499 0.94173 0.98454 1.20928 1.01320 0.94225 0.97339 1.21110 1.07028 1.00454 0.94557 1.19374 0.99674 0.90797 0.89052 1.83834 1.78162 1.20353 1.31199 1.21691 1.43260 0.78702 1.04626 0.88607 1.26447 0.95709 1.05648 0.94076 1.70179 1.41450 1.38113 1.06187 0.84699 0.79427 0.73964 0.78448 1.18211 1.19701 1.18602 1.21589 0.96782 0.95694 1.00902 1.21124 0.99204 0.92245 1.01237 1.22398 0.81825 1.00676 1.03464 1.42896 1.07026 1.07266 1.45767 1.21634 0.80587 0.99511 1.16227 1.20317 1.02772 0.84951 1.03984 0.90423 0.87755 0.92516 0.75727 0.87342 0.84043 0.83944 0.85990 0.92140 0.83224 0.78429 0.77563 0.89516 0.88460 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.03 71.24 0.71 -0.80 16 2 C 0.02 0.58 7.06 41.60 0.29 0.87 16 3 N -0.52 -21.51 11.31 -182.03 -2.06 -23.56 16 4 C 0.19 6.96 6.47 134.33 0.87 7.82 16 5 C 0.17 6.28 4.93 38.36 0.19 6.47 16 6 N -0.69 -30.85 5.41 -179.83 -0.97 -31.82 16 7 C 0.15 7.10 6.57 38.33 0.25 7.35 16 8 C -0.13 -5.66 9.00 22.39 0.20 -5.46 16 9 C -0.15 -5.65 10.04 22.28 0.22 -5.43 16 10 C -0.12 -4.63 10.04 22.28 0.22 -4.41 16 11 C -0.21 -10.07 9.16 22.37 0.20 -9.86 16 12 C 0.06 3.35 6.67 22.70 0.15 3.50 16 13 O -0.23 -14.05 9.01 -22.73 -0.20 -14.25 16 14 C -0.41 -24.43 9.49 67.91 0.64 -23.78 16 15 H 0.10 5.35 5.21 -2.91 -0.02 5.34 16 16 C -0.02 -1.27 5.49 84.82 0.47 -0.81 16 17 N -0.92 -57.26 13.67 21.61 0.30 -56.97 16 18 Si 1.01 44.40 29.55 68.60 2.03 46.43 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 C -0.12 -3.36 9.99 22.43 0.22 -3.14 16 23 C -0.12 -2.05 9.98 22.03 0.22 -1.83 16 24 C 0.04 0.66 10.85 83.17 0.90 1.56 16 25 N -0.36 -9.69 2.95 -338.28 -1.00 -10.68 16 26 C -0.07 -1.64 7.03 41.08 0.29 -1.35 16 27 C -0.06 -0.77 9.91 71.24 0.71 -0.07 16 28 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.10 1.60 7.75 -2.39 -0.02 1.58 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.41 19.86 8.20 -92.70 -0.76 19.10 16 32 H 0.11 4.37 6.42 -2.91 -0.02 4.35 16 33 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.12 5.79 5.64 -2.91 -0.02 5.77 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.94 7.77 -2.39 -0.02 0.92 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -84.43 358.11 5.17 -79.26 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.31 Total: 40.96 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 6.77 Total: -29.36 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -3.73 Total: -123.04 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.20 Total: -14.25 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -84.43 5.17 -79.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.941 kcal (2) G-P(sol) polarization free energy of solvation -84.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds