Wall clock time and date at job start Tue Mar 31 2020 14:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30256 * 126.09471 * 2 1 4 4 N 1.39868 * 110.08418 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.46515 * 179.97438 * 4 3 2 6 6 C 1.37242 * 109.06307 * 0.02562 * 4 3 2 7 7 C 1.39286 * 133.66637 * 180.02562 * 6 4 3 8 8 C 1.36472 * 120.09807 * 179.70999 * 7 6 4 9 9 C 1.39586 * 120.75106 * 0.51690 * 8 7 6 10 10 N 1.39920 * 119.84546 * 179.75693 * 9 8 7 11 11 C 1.39775 * 120.00001 * 319.75816 * 10 9 8 12 12 C 1.38781 * 120.10233 * 352.45834 * 11 10 9 13 13 C 1.38182 * 119.98842 * 179.97438 * 12 11 10 14 14 C 1.38359 * 120.20724 * 359.97438 * 13 12 11 15 15 C 1.38170 * 120.21346 * 0.02562 * 14 13 12 16 16 C 1.38725 * 120.00819 * 359.97438 * 15 14 13 17 17 O 1.35783 * 120.10266 * 180.02562 * 16 15 14 18 18 C 1.34807 * 117.00184 * 353.62097 * 17 16 15 19 19 H 1.07998 * 119.99858 * 5.28230 * 18 17 16 20 20 C 1.38622 * 120.00240 * 185.29248 * 18 17 16 21 21 N 1.31586 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46963 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47013 * 119.99774 * 22 20 18 25 25 H 1.48502 * 109.47216 * 239.99670 * 22 20 18 26 26 C 1.38084 * 120.31289 * 359.48091 * 9 8 7 27 27 C 1.39964 * 119.46566 * 0.25152 * 26 9 8 28 28 H 1.09001 * 109.47464 * 269.97425 * 1 2 3 29 29 H 1.08996 * 109.47245 * 29.97809 * 1 2 3 30 30 H 1.09000 * 109.47288 * 149.97436 * 1 2 3 31 31 H 1.08999 * 109.47367 * 270.00451 * 5 4 3 32 32 H 1.08995 * 109.46799 * 30.00585 * 5 4 3 33 33 H 1.08997 * 109.46762 * 150.00311 * 5 4 3 34 34 H 1.07996 * 119.95243 * 359.96473 * 7 6 4 35 35 H 1.08004 * 119.62808 * 180.25435 * 8 7 6 36 36 H 0.97004 * 120.00388 * 139.75686 * 10 9 8 37 37 H 1.07994 * 120.00838 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.89791 * 180.27422 * 13 12 11 39 39 H 1.07997 * 119.89118 * 179.97438 * 14 13 12 40 40 H 1.08000 * 119.99952 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99983 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.26800 * 180.27587 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2743 1.0525 0.0000 4 7 3.6187 0.6667 -0.0006 5 6 4.7649 1.5793 -0.0013 6 6 3.6918 -0.7037 -0.0016 7 6 4.7491 -1.6104 -0.0020 8 6 4.5001 -2.9522 0.0030 9 6 3.1904 -3.4350 -0.0023 10 7 2.9568 -4.8146 -0.0022 11 6 3.7546 -5.6585 -0.7801 12 6 4.6736 -5.1217 -1.6707 13 6 5.4614 -5.9582 -2.4382 14 6 5.3379 -7.3313 -2.3218 15 6 4.4257 -7.8749 -1.4377 16 6 3.6302 -7.0434 -0.6629 17 8 2.7335 -7.5755 0.2068 18 6 2.5704 -8.9133 0.1757 19 1 3.2003 -9.5195 -0.4584 20 6 1.5941 -9.5109 0.9576 21 7 0.8269 -8.7724 1.7305 22 14 1.3677 -11.3646 0.9139 23 1 2.3488 -11.9611 -0.0279 24 1 1.5852 -11.9220 2.2731 25 1 -0.0104 -11.6845 0.4625 26 6 2.1241 -2.5577 -0.0018 27 6 2.3668 -1.1792 -0.0014 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 5.0486 1.8055 -1.0291 32 1 4.4951 2.5018 0.5126 33 1 5.6037 1.1093 0.5122 34 1 5.7676 -1.2511 -0.0021 35 1 5.3257 -3.6485 0.0068 36 1 2.2413 -5.1854 0.5377 37 1 4.7731 -4.0504 -1.7640 38 1 6.1793 -5.5389 -3.1276 39 1 5.9559 -7.9803 -2.9244 40 1 4.3324 -8.9472 -1.3493 41 1 0.1440 -9.1906 2.2779 42 1 1.1111 -2.9320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:09 Heat of formation + Delta-G solvation = 99.438424 kcal Electronic energy + Delta-G solvation = -25930.050429 eV Core-core repulsion = 22263.443729 eV Total energy + Delta-G solvation = -3666.606700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21047 -39.47694 -37.80123 -36.21192 -34.33825 -34.01247 -32.26297 -30.49349 -29.68115 -29.31433 -29.08202 -27.39612 -25.37952 -25.04601 -23.13385 -22.12711 -21.22883 -20.77832 -19.64811 -17.97297 -17.56861 -17.12430 -16.79490 -15.86213 -15.60470 -15.37537 -14.63104 -14.55497 -14.13501 -13.88279 -13.83280 -13.75621 -13.64908 -13.35204 -13.22311 -12.89800 -12.63911 -12.55523 -12.46845 -12.23211 -11.85195 -11.68361 -11.36548 -11.10727 -10.98059 -10.91355 -10.67724 -10.61651 -10.42414 -10.14925 -9.56413 -9.43028 -8.84041 -8.50895 -7.89546 -7.48017 -6.46190 -6.39391 -4.01291 1.00896 1.56417 2.26495 2.38809 2.42340 2.49751 3.11845 3.13845 3.18890 3.82460 3.90816 3.98299 4.37100 4.56639 4.61363 4.70431 5.00278 5.05258 5.05400 5.18513 5.20881 5.27457 5.42109 5.48192 5.51645 5.60149 5.64716 5.71007 5.82115 5.88940 5.99708 6.07802 6.21836 6.30516 6.49660 6.56053 6.58269 6.70857 6.81392 6.90227 7.08567 7.15827 7.28010 7.41593 7.66031 7.68915 7.95591 8.08807 8.30133 9.01376 9.69234 10.72874 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.003107 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.367317 B = 9008.957599 C =10343.606652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.092 3.908 3 N -0.259 5.259 4 N -0.415 5.415 5 C 0.115 3.885 6 C 0.098 3.902 7 C -0.120 4.120 8 C -0.097 4.097 9 C 0.159 3.841 10 N -0.676 5.676 11 C 0.129 3.871 12 C -0.153 4.153 13 C -0.171 4.171 14 C -0.113 4.113 15 C -0.205 4.205 16 C 0.110 3.890 17 O -0.185 6.185 18 C -0.385 4.385 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.866 5.866 22 Si 0.939 3.061 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.096 4.096 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.418 0.582 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.268 0.732 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 15.063 -3.705 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 N -0.073 5.073 4 N -0.205 5.205 5 C -0.026 4.026 6 C -0.015 4.015 7 C -0.142 4.142 8 C -0.120 4.120 9 C 0.059 3.941 10 N -0.301 5.301 11 C 0.031 3.969 12 C -0.175 4.175 13 C -0.190 4.190 14 C -0.133 4.133 15 C -0.225 4.225 16 C 0.055 3.945 17 O -0.090 6.090 18 C -0.461 4.461 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.502 5.502 22 Si 0.764 3.236 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.121 4.121 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.256 0.744 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.138 16.544 -3.411 17.656 hybrid contribution -0.141 -1.957 0.145 1.968 sum 4.998 14.587 -3.266 15.761 Atomic orbital electron populations 1.20214 0.85870 1.03671 1.03346 1.23456 0.96485 0.88735 0.99895 1.76433 0.87346 1.23679 1.19871 1.47924 1.03648 1.02649 1.66298 1.21641 0.85010 0.93389 1.02581 1.18695 0.95591 0.84232 1.02991 1.19537 0.96602 0.91336 1.06743 1.20834 0.96675 0.94700 0.99795 1.17370 0.92501 0.83933 1.00288 1.41876 1.37281 1.01794 1.49111 1.17016 0.96877 0.86720 0.96266 1.20565 0.99005 0.99248 0.98670 1.20412 1.02631 0.93265 1.02721 1.20649 0.98902 0.94653 0.99087 1.20963 1.00277 1.00156 1.01129 1.18910 0.92944 0.90194 0.92425 1.83870 1.51712 1.24313 1.49077 1.21299 1.18620 0.79010 1.27194 0.89155 1.25227 0.95117 1.00313 0.95881 1.70032 1.19622 1.35639 1.24874 0.85668 0.78597 0.80861 0.78432 1.19171 1.20261 1.20234 1.20292 0.98723 0.89846 1.03209 1.19457 0.91558 0.93424 1.10791 0.90099 0.90634 0.89927 0.91673 0.89879 0.90016 0.85837 0.84367 0.74373 0.86042 0.87541 0.87609 0.85370 0.92192 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.48 36.00 0.38 -0.33 16 2 C 0.09 1.25 7.43 -80.18 -0.60 0.65 16 3 N -0.26 -3.69 12.40 34.84 0.43 -3.26 16 4 N -0.42 -5.49 4.05 -65.43 -0.27 -5.75 16 5 C 0.12 0.98 11.40 59.85 0.68 1.66 16 6 C 0.10 1.40 6.87 -84.10 -0.58 0.83 16 7 C -0.12 -1.56 9.94 -39.83 -0.40 -1.96 16 8 C -0.10 -1.43 7.27 -39.72 -0.29 -1.72 16 9 C 0.16 2.61 5.92 -83.72 -0.50 2.11 16 10 N -0.68 -12.84 5.47 -8.27 -0.05 -12.89 16 11 C 0.13 2.64 6.44 -83.55 -0.54 2.10 16 12 C -0.15 -2.74 7.97 -39.40 -0.31 -3.05 16 13 C -0.17 -2.92 10.04 -39.56 -0.40 -3.32 16 14 C -0.11 -2.06 10.04 -39.56 -0.40 -2.45 16 15 C -0.20 -4.36 9.16 -39.43 -0.36 -4.72 16 16 C 0.11 2.55 6.66 -38.92 -0.26 2.29 16 17 O -0.18 -4.98 9.02 0.01 0.00 -4.98 16 18 C -0.38 -10.40 9.49 30.87 0.29 -10.11 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 20 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 21 N -0.87 -24.52 13.67 55.48 0.76 -23.76 16 22 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 26 C -0.10 -1.47 10.03 -38.99 -0.39 -1.86 16 27 C -0.14 -2.15 6.33 -105.21 -0.67 -2.82 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.14 2.01 6.47 -52.48 -0.34 1.67 16 36 H 0.42 8.48 8.22 -40.82 -0.34 8.14 16 37 H 0.12 1.96 5.26 -52.49 -0.28 1.68 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.13 2.73 5.65 -52.49 -0.30 2.43 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -31.53 356.64 -8.07 -39.60 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.88 Total: 12.24 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -4.42 Total: -21.77 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.88 Total: -45.66 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.53 -8.07 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.037 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds