Wall clock time and date at job start Tue Mar 31 2020 14:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30256 * 126.09471 * 2 1 4 4 N 1.39868 * 110.08418 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.46515 * 179.97438 * 4 3 2 6 6 C 1.37242 * 109.06307 * 0.02562 * 4 3 2 7 7 C 1.39286 * 133.66637 * 180.02562 * 6 4 3 8 8 C 1.36472 * 120.09807 * 179.70999 * 7 6 4 9 9 C 1.39586 * 120.75106 * 0.51690 * 8 7 6 10 10 N 1.39920 * 119.84546 * 179.75693 * 9 8 7 11 11 C 1.39775 * 120.00001 * 319.75816 * 10 9 8 12 12 C 1.38781 * 120.10233 * 352.45834 * 11 10 9 13 13 C 1.38182 * 119.98842 * 179.97438 * 12 11 10 14 14 C 1.38359 * 120.20724 * 359.97438 * 13 12 11 15 15 C 1.38170 * 120.21346 * 0.02562 * 14 13 12 16 16 C 1.38725 * 120.00819 * 359.97438 * 15 14 13 17 17 O 1.35783 * 120.10266 * 180.02562 * 16 15 14 18 18 C 1.34807 * 117.00184 * 353.62097 * 17 16 15 19 19 H 1.07998 * 119.99858 * 5.28230 * 18 17 16 20 20 C 1.38622 * 120.00240 * 185.29248 * 18 17 16 21 21 N 1.31586 * 119.99731 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46963 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47013 * 119.99774 * 22 20 18 25 25 H 1.48502 * 109.47216 * 239.99670 * 22 20 18 26 26 C 1.38084 * 120.31289 * 359.48091 * 9 8 7 27 27 C 1.39964 * 119.46566 * 0.25152 * 26 9 8 28 28 H 1.09001 * 109.47464 * 269.97425 * 1 2 3 29 29 H 1.08996 * 109.47245 * 29.97809 * 1 2 3 30 30 H 1.09000 * 109.47288 * 149.97436 * 1 2 3 31 31 H 1.08999 * 109.47367 * 270.00451 * 5 4 3 32 32 H 1.08995 * 109.46799 * 30.00585 * 5 4 3 33 33 H 1.08997 * 109.46762 * 150.00311 * 5 4 3 34 34 H 1.07996 * 119.95243 * 359.96473 * 7 6 4 35 35 H 1.08004 * 119.62808 * 180.25435 * 8 7 6 36 36 H 0.97004 * 120.00388 * 139.75686 * 10 9 8 37 37 H 1.07994 * 120.00838 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.89791 * 180.27422 * 13 12 11 39 39 H 1.07997 * 119.89118 * 179.97438 * 14 13 12 40 40 H 1.08000 * 119.99952 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99983 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.26800 * 180.27587 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2743 1.0525 0.0000 4 7 3.6187 0.6667 -0.0006 5 6 4.7649 1.5793 -0.0013 6 6 3.6918 -0.7037 -0.0016 7 6 4.7491 -1.6104 -0.0020 8 6 4.5001 -2.9522 0.0030 9 6 3.1904 -3.4350 -0.0023 10 7 2.9568 -4.8146 -0.0022 11 6 3.7546 -5.6585 -0.7801 12 6 4.6736 -5.1217 -1.6707 13 6 5.4614 -5.9582 -2.4382 14 6 5.3379 -7.3313 -2.3218 15 6 4.4257 -7.8749 -1.4377 16 6 3.6302 -7.0434 -0.6629 17 8 2.7335 -7.5755 0.2068 18 6 2.5704 -8.9133 0.1757 19 1 3.2003 -9.5195 -0.4584 20 6 1.5941 -9.5109 0.9576 21 7 0.8269 -8.7724 1.7305 22 14 1.3677 -11.3646 0.9139 23 1 2.3488 -11.9611 -0.0279 24 1 1.5852 -11.9220 2.2731 25 1 -0.0104 -11.6845 0.4625 26 6 2.1241 -2.5577 -0.0018 27 6 2.3668 -1.1792 -0.0014 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 5.0486 1.8055 -1.0291 32 1 4.4951 2.5018 0.5126 33 1 5.6037 1.1093 0.5122 34 1 5.7676 -1.2511 -0.0021 35 1 5.3257 -3.6485 0.0068 36 1 2.2413 -5.1854 0.5377 37 1 4.7731 -4.0504 -1.7640 38 1 6.1793 -5.5389 -3.1276 39 1 5.9559 -7.9803 -2.9244 40 1 4.3324 -8.9472 -1.3493 41 1 0.1440 -9.1906 2.2779 42 1 1.1111 -2.9320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:08 Heat of formation + Delta-G solvation = 81.302158 kcal Electronic energy + Delta-G solvation = -25930.836877 eV Core-core repulsion = 22263.443729 eV Total energy + Delta-G solvation = -3667.393148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28458 -41.00766 -39.20742 -37.76439 -35.57988 -35.02068 -34.19511 -31.68079 -30.76820 -30.57101 -30.32167 -28.73065 -27.28001 -25.98430 -24.33163 -23.46150 -22.74974 -22.08421 -20.68160 -19.75445 -19.12313 -18.39580 -17.86016 -17.37498 -16.72608 -16.53264 -16.27744 -15.96476 -15.49055 -15.45673 -15.23690 -14.98814 -14.82032 -14.39212 -14.23226 -14.15928 -13.81769 -13.73699 -13.50855 -13.46418 -13.23952 -13.03833 -12.73135 -12.49619 -12.41782 -12.21996 -12.14429 -12.05003 -11.72282 -11.42098 -11.20545 -10.76579 -10.67954 -9.68401 -9.26830 -8.87439 -8.41402 -7.84979 -6.03790 -0.09248 0.32739 0.72588 0.95522 1.37320 1.44394 1.44778 1.48932 1.54043 2.19350 2.47336 2.72595 2.93168 3.24961 3.46677 3.50380 3.54109 3.71960 4.10832 4.18984 4.28678 4.34428 4.36369 4.39291 4.46946 4.60386 4.64305 4.67412 4.69903 4.77205 4.78700 4.93518 5.01149 5.06128 5.14912 5.17767 5.25179 5.37884 5.50348 5.53302 5.66219 5.71799 5.87214 6.03993 6.11537 6.19820 6.61457 6.64895 6.78309 7.05046 7.85970 8.81622 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.003107 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.367317 B = 9008.957599 C =10343.606652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.085 3.915 3 N -0.276 5.276 4 N -0.416 5.416 5 C 0.103 3.897 6 C 0.092 3.908 7 C -0.104 4.104 8 C -0.102 4.102 9 C 0.134 3.866 10 N -0.684 5.684 11 C 0.126 3.874 12 C -0.152 4.152 13 C -0.146 4.146 14 C -0.119 4.119 15 C -0.212 4.212 16 C 0.062 3.938 17 O -0.229 6.229 18 C -0.403 4.403 19 H 0.097 0.903 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.012 2.988 23 H -0.254 1.254 24 H -0.272 1.272 25 H -0.271 1.271 26 C -0.098 4.098 27 C -0.166 4.166 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.405 0.595 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.269 0.731 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 16.593 -5.408 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 N -0.091 5.091 4 N -0.205 5.205 5 C -0.036 4.036 6 C -0.023 4.023 7 C -0.126 4.126 8 C -0.125 4.125 9 C 0.036 3.964 10 N -0.307 5.307 11 C 0.027 3.973 12 C -0.174 4.174 13 C -0.164 4.164 14 C -0.138 4.138 15 C -0.232 4.232 16 C 0.011 3.989 17 O -0.136 6.136 18 C -0.479 4.479 19 H 0.114 0.886 20 C -0.219 4.219 21 N -0.558 5.558 22 Si 0.833 3.167 23 H -0.177 1.177 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.122 4.122 27 C -0.175 4.175 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.241 0.759 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.542 18.153 -5.153 20.322 hybrid contribution -0.688 -2.086 0.530 2.259 sum 6.855 16.068 -4.622 18.070 Atomic orbital electron populations 1.20347 0.83768 1.04620 1.04355 1.23970 0.97956 0.88019 0.99240 1.76413 0.88140 1.24061 1.20458 1.48348 1.04224 1.02761 1.65213 1.22043 0.84172 0.93324 1.04097 1.18980 0.95679 0.85158 1.02457 1.19818 0.98010 0.90221 1.04571 1.20861 0.95713 0.95571 1.00344 1.17587 0.93809 0.82667 1.02293 1.41916 1.36900 1.02864 1.49049 1.17350 0.97210 0.86106 0.96588 1.20908 0.98120 1.00641 0.97738 1.20973 1.01476 0.92670 1.01328 1.21009 0.98384 0.95896 0.98551 1.21130 1.00757 0.99716 1.01590 1.19428 0.93872 0.91788 0.93844 1.83839 1.54052 1.24161 1.51581 1.21733 1.18987 0.79798 1.27414 0.88551 1.26397 0.94656 1.05434 0.95410 1.70173 1.21050 1.37827 1.26723 0.84603 0.78815 0.74523 0.78776 1.17715 1.19681 1.19664 1.20332 0.98660 0.90261 1.02937 1.19717 0.92768 0.93461 1.11536 0.88982 0.89243 0.89396 0.90168 0.88867 0.87802 0.82182 0.84084 0.75944 0.83819 0.83168 0.84198 0.86378 0.92164 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.48 71.23 0.75 -0.60 16 2 C 0.08 2.23 7.43 44.79 0.33 2.57 16 3 N -0.28 -7.44 12.40 -43.68 -0.54 -7.98 16 4 N -0.42 -10.00 4.05 -360.91 -1.46 -11.46 16 5 C 0.10 1.42 11.40 127.77 1.46 2.88 16 6 C 0.09 2.44 6.87 39.17 0.27 2.71 16 7 C -0.10 -2.42 9.94 22.11 0.22 -2.20 16 8 C -0.10 -2.85 7.27 22.18 0.16 -2.68 16 9 C 0.13 4.45 5.92 38.14 0.23 4.67 16 10 N -0.68 -27.19 5.47 -180.08 -0.98 -28.17 16 11 C 0.13 5.25 6.44 38.32 0.25 5.49 16 12 C -0.15 -5.14 7.97 22.39 0.18 -4.97 16 13 C -0.15 -4.43 10.04 22.29 0.22 -4.20 16 14 C -0.12 -4.02 10.04 22.28 0.22 -3.79 16 15 C -0.21 -9.10 9.16 22.37 0.20 -8.90 16 16 C 0.06 3.01 6.66 22.70 0.15 3.16 16 17 O -0.23 -13.16 9.02 -22.87 -0.21 -13.37 16 18 C -0.40 -22.97 9.49 67.91 0.64 -22.32 16 19 H 0.10 5.11 5.21 -2.91 -0.02 5.10 16 20 C -0.02 -1.22 5.49 84.82 0.47 -0.75 16 21 N -0.92 -55.08 13.67 21.61 0.30 -54.79 16 22 Si 1.01 42.77 29.55 68.60 2.03 44.80 16 23 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 C -0.10 -3.04 10.03 22.65 0.23 -2.81 16 27 C -0.17 -4.86 6.33 -20.24 -0.13 -4.99 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 0.96 8.13 -2.39 -0.02 0.94 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.14 3.82 6.47 -2.91 -0.02 3.80 16 36 H 0.41 17.89 8.22 -92.71 -0.76 17.12 16 37 H 0.14 4.22 5.26 -2.91 -0.02 4.20 16 38 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.12 5.18 5.65 -2.91 -0.02 5.17 16 41 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -72.90 356.64 5.29 -67.61 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: 0.31 Total: 40.11 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 5.85 Total: -36.74 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -2.69 Total: -102.41 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.21 Total: -13.37 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.90 5.29 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.911 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds