Wall clock time and date at job start Tue Mar 31 2020 15:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33470 * 125.70640 * 2 1 4 4 C 1.32511 * 109.15580 * 179.97438 * 3 2 1 5 5 C 1.41537 * 132.33017 * 180.02562 * 4 3 2 6 6 N 1.39612 * 120.39869 * 0.02562 * 5 4 3 7 7 C 1.39734 * 119.99978 * 172.39670 * 6 5 4 8 8 C 1.38990 * 120.00871 * 317.92319 * 7 6 5 9 9 C 1.37986 * 119.99199 * 179.81265 * 8 7 6 10 10 C 1.38923 * 120.00494 * 0.44179 * 9 8 7 11 11 O 1.35775 * 119.98982 * 179.77204 * 10 9 8 12 12 C 1.34821 * 116.99962 * 185.60929 * 11 10 9 13 13 H 1.07999 * 120.00188 * 354.88474 * 12 11 10 14 14 C 1.38602 * 120.00197 * 174.88014 * 12 11 10 15 15 N 1.31596 * 119.99633 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00039 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47034 * 60.00380 * 16 14 12 18 18 H 1.48500 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46934 * 300.00320 * 16 14 12 20 20 C 1.38927 * 120.01831 * 359.78416 * 10 9 8 21 21 C 1.37980 * 120.00785 * 0.02562 * 20 10 9 22 22 C 1.36689 * 119.20389 * 179.97438 * 5 4 3 23 23 C 1.40386 * 119.62306 * 359.97438 * 22 5 4 24 24 C 1.34935 * 120.37468 * 0.02562 * 23 22 5 25 25 N 1.36726 * 120.74596 * 359.97438 * 24 23 22 26 26 C 1.35157 * 125.70923 * 179.97438 * 2 1 3 27 27 C 1.50696 * 126.41512 * 0.03506 * 26 2 1 28 28 H 1.09000 * 109.47188 * 90.02132 * 1 2 3 29 29 H 1.09007 * 109.46632 * 210.02216 * 1 2 3 30 30 H 1.09001 * 109.47174 * 330.01693 * 1 2 3 31 31 H 0.97000 * 119.99778 * 352.39995 * 6 5 4 32 32 H 1.08000 * 120.00750 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.99861 * 180.22654 * 9 8 7 34 34 H 0.97003 * 119.99600 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.99626 * 179.97438 * 20 10 9 36 36 H 1.08000 * 120.00555 * 179.97438 * 21 20 10 37 37 H 1.08001 * 120.18790 * 180.02562 * 22 5 4 38 38 H 1.08002 * 119.80965 * 179.97438 * 23 22 5 39 39 H 1.07998 * 119.62786 * 179.97438 * 24 23 22 40 40 H 1.09006 * 109.47332 * 269.98243 * 27 26 2 41 41 H 1.09004 * 109.47181 * 29.97453 * 27 26 2 42 42 H 1.08994 * 109.47349 * 149.97931 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2860 1.0838 0.0000 4 6 3.5562 0.7063 0.0006 5 6 4.7678 1.4378 0.0013 6 7 4.7503 2.8338 0.0020 7 6 5.9409 3.5474 0.1629 8 6 6.8786 3.1326 1.1011 9 6 8.0559 3.8353 1.2569 10 6 8.2998 4.9626 0.4825 11 8 9.4563 5.6564 0.6394 12 6 9.5810 6.8038 -0.0575 13 1 8.8182 7.0909 -0.7661 14 6 10.6880 7.6152 0.1356 15 7 11.6176 7.2652 0.9988 16 14 10.8603 9.2053 -0.8294 17 1 9.7083 10.0932 -0.5302 18 1 12.1230 9.8846 -0.4428 19 1 10.8870 8.9018 -2.2828 20 6 7.3606 5.3803 -0.4521 21 6 6.1849 4.6758 -0.6112 22 6 5.9554 0.7611 0.0023 23 6 5.9541 -0.6428 0.0031 24 6 4.7894 -1.3240 0.0024 25 7 3.5927 -0.6625 0.0014 26 6 2.2959 -1.0975 0.0005 27 6 1.8333 -2.5317 0.0004 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 3.9116 3.3083 -0.1090 32 1 6.6871 2.2588 1.7063 33 1 8.7863 3.5109 1.9833 34 1 12.3922 7.8332 1.1342 35 1 7.5504 6.2569 -1.0536 36 1 5.4546 5.0008 -1.3375 37 1 6.8895 1.3033 0.0033 38 1 6.8907 -1.1806 0.0035 39 1 4.8024 -2.4039 0.0027 40 1 1.7215 -2.8775 1.0281 41 1 0.8747 -2.6043 -0.5135 42 1 2.5688 -3.1506 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:36 Heat of formation + Delta-G solvation = 91.530662 kcal Electronic energy + Delta-G solvation = -25550.431768 eV Core-core repulsion = 21883.482161 eV Total energy + Delta-G solvation = -3666.949607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.85497 -39.51712 -38.13146 -36.81236 -35.11012 -32.88179 -32.33996 -32.17003 -30.46760 -29.53278 -28.44526 -27.45047 -26.04967 -25.25662 -22.95313 -22.29455 -21.86462 -21.05451 -20.11127 -18.14628 -17.78828 -17.56779 -16.78912 -16.20820 -16.02883 -15.87476 -15.11661 -14.60312 -14.52008 -13.89272 -13.78758 -13.57387 -13.41577 -13.26079 -13.20764 -13.05460 -12.86333 -12.81783 -12.45780 -12.36067 -12.11310 -11.84353 -11.68685 -11.43206 -11.39214 -11.22286 -10.86166 -10.80456 -10.50408 -10.10825 -9.55951 -9.36283 -8.85733 -8.38103 -8.33434 -7.53830 -6.65919 -6.50238 -4.08089 0.96044 1.28912 2.05060 2.20931 2.52673 2.76199 3.10504 3.11400 3.14397 3.53764 3.63235 3.92505 4.03739 4.44361 4.51745 4.62666 4.80746 4.95254 5.02779 5.09180 5.20130 5.22131 5.24960 5.35357 5.48403 5.50738 5.54488 5.61566 5.67274 5.77959 5.88829 6.06634 6.07753 6.13788 6.24244 6.35449 6.59733 6.60873 6.69903 6.79653 6.95044 7.10613 7.14876 7.25405 7.42848 7.64910 7.87765 7.91483 7.93975 8.94920 9.63202 10.67211 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.002329 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.029615 B =12021.176619 C =12630.192812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 N -0.486 5.486 4 C 0.194 3.806 5 C 0.261 3.739 6 N -0.650 5.650 7 C 0.047 3.953 8 C -0.094 4.094 9 C -0.172 4.172 10 C 0.145 3.855 11 O -0.174 6.174 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.040 3.960 15 N -0.861 5.861 16 Si 0.941 3.059 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.214 4.214 21 C -0.086 4.086 22 C -0.229 4.229 23 C -0.072 4.072 24 C -0.035 4.035 25 N -0.330 5.330 26 C -0.071 4.071 27 C -0.067 4.067 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.411 0.589 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 -16.973 -2.457 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 N -0.207 5.207 4 C -0.051 4.051 5 C 0.153 3.847 6 N -0.269 5.269 7 C -0.046 4.046 8 C -0.114 4.114 9 C -0.192 4.192 10 C 0.091 3.909 11 O -0.077 6.077 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.495 5.495 16 Si 0.766 3.234 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.234 4.234 21 C -0.107 4.107 22 C -0.260 4.260 23 C -0.093 4.093 24 C -0.157 4.157 25 N 0.000 5.000 26 C -0.186 4.186 27 C -0.125 4.125 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.130 0.870 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.171 0.829 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.079 -16.067 -2.210 22.838 hybrid contribution 0.134 0.182 -0.581 0.623 sum -15.945 -15.885 -2.791 22.679 Atomic orbital electron populations 1.20091 0.87154 1.02899 1.02419 1.20574 0.96453 0.87485 1.04192 1.70464 0.98032 1.29611 1.22579 1.20121 0.93242 0.81086 1.10697 1.16507 0.89114 0.84069 0.95049 1.41752 1.08793 1.01213 1.75096 1.17160 0.89099 0.97073 1.01287 1.20617 0.93952 1.00179 0.96629 1.20075 0.98635 0.97152 1.03317 1.19395 0.86600 0.91902 0.93042 1.83983 1.29667 1.33206 1.60836 1.21275 1.08175 0.96415 1.20971 0.89049 1.25295 0.94915 0.99182 0.97103 1.70044 1.09399 1.37707 1.32349 0.85774 0.78236 0.80067 0.79343 1.19457 1.20245 1.19464 1.21019 0.95164 1.03745 1.03491 1.20591 0.97018 0.95540 0.97532 1.20775 0.97489 0.93833 1.13862 1.20508 0.96822 0.93896 0.98042 1.21174 0.82790 0.98151 1.13605 1.42230 1.05665 1.07590 1.44558 1.20869 0.81330 0.97870 1.18498 1.20118 1.01559 0.88390 1.02446 0.91094 0.91096 0.90851 0.75245 0.86187 0.85933 0.91885 0.85021 0.87012 0.83053 0.83532 0.82892 0.91215 0.90027 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.03 36.00 0.36 -0.23 16 2 C 0.05 0.62 7.06 -82.98 -0.59 0.03 16 3 N -0.49 -7.55 11.31 -8.89 -0.10 -7.66 16 4 C 0.19 2.99 7.69 -155.98 -1.20 1.79 16 5 C 0.26 3.98 6.46 -83.62 -0.54 3.44 16 6 N -0.65 -10.07 5.48 -8.28 -0.05 -10.12 16 7 C 0.05 0.81 5.86 -83.70 -0.49 0.32 16 8 C -0.09 -1.63 7.39 -39.39 -0.29 -1.92 16 9 C -0.17 -3.44 9.98 -39.42 -0.39 -3.84 16 10 C 0.14 3.34 6.65 -39.07 -0.26 3.08 16 11 O -0.17 -4.79 9.75 0.00 0.00 -4.79 16 12 C -0.39 -10.63 9.48 30.87 0.29 -10.34 16 13 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 16 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.21 -4.44 9.16 -39.42 -0.36 -4.80 16 21 C -0.09 -1.54 9.96 -39.40 -0.39 -1.93 16 22 C -0.23 -3.18 8.09 -39.33 -0.32 -3.50 16 23 C -0.07 -0.79 9.98 -39.95 -0.40 -1.19 16 24 C -0.04 -0.38 10.85 -16.54 -0.18 -0.56 16 25 N -0.33 -4.36 2.95 -58.28 -0.17 -4.53 16 26 C -0.07 -0.83 7.03 -81.48 -0.57 -1.41 16 27 C -0.07 -0.48 9.91 36.00 0.36 -0.13 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.45 7.76 -51.93 -0.40 0.05 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.41 6.05 8.86 -40.82 -0.36 5.69 16 32 H 0.12 1.88 6.69 -52.49 -0.35 1.53 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.13 2.72 5.63 -52.49 -0.30 2.43 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.15 2.20 5.37 -52.49 -0.28 1.92 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.45 7.77 -51.93 -0.40 0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -31.87 355.53 -9.18 -41.05 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.89 Total: 9.79 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -5.07 Total: -20.22 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.44 Total: -46.25 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.00 Total: -4.79 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.87 -9.18 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.581 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds