Wall clock time and date at job start Tue Mar 31 2020 15:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33470 * 125.70640 * 2 1 4 4 C 1.32511 * 109.15580 * 179.97438 * 3 2 1 5 5 C 1.41537 * 132.33017 * 180.02562 * 4 3 2 6 6 N 1.39612 * 120.39869 * 0.02562 * 5 4 3 7 7 C 1.39734 * 119.99978 * 172.39670 * 6 5 4 8 8 C 1.38990 * 120.00871 * 317.92319 * 7 6 5 9 9 C 1.37986 * 119.99199 * 179.81265 * 8 7 6 10 10 C 1.38923 * 120.00494 * 0.44179 * 9 8 7 11 11 O 1.35775 * 119.98982 * 179.77204 * 10 9 8 12 12 C 1.34821 * 116.99962 * 185.60929 * 11 10 9 13 13 H 1.07999 * 120.00188 * 354.88474 * 12 11 10 14 14 C 1.38602 * 120.00197 * 174.88014 * 12 11 10 15 15 N 1.31596 * 119.99633 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00039 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47034 * 60.00380 * 16 14 12 18 18 H 1.48500 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46934 * 300.00320 * 16 14 12 20 20 C 1.38927 * 120.01831 * 359.78416 * 10 9 8 21 21 C 1.37980 * 120.00785 * 0.02562 * 20 10 9 22 22 C 1.36689 * 119.20389 * 179.97438 * 5 4 3 23 23 C 1.40386 * 119.62306 * 359.97438 * 22 5 4 24 24 C 1.34935 * 120.37468 * 0.02562 * 23 22 5 25 25 N 1.36726 * 120.74596 * 359.97438 * 24 23 22 26 26 C 1.35157 * 125.70923 * 179.97438 * 2 1 3 27 27 C 1.50696 * 126.41512 * 0.03506 * 26 2 1 28 28 H 1.09000 * 109.47188 * 90.02132 * 1 2 3 29 29 H 1.09007 * 109.46632 * 210.02216 * 1 2 3 30 30 H 1.09001 * 109.47174 * 330.01693 * 1 2 3 31 31 H 0.97000 * 119.99778 * 352.39995 * 6 5 4 32 32 H 1.08000 * 120.00750 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.99861 * 180.22654 * 9 8 7 34 34 H 0.97003 * 119.99600 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.99626 * 179.97438 * 20 10 9 36 36 H 1.08000 * 120.00555 * 179.97438 * 21 20 10 37 37 H 1.08001 * 120.18790 * 180.02562 * 22 5 4 38 38 H 1.08002 * 119.80965 * 179.97438 * 23 22 5 39 39 H 1.07998 * 119.62786 * 179.97438 * 24 23 22 40 40 H 1.09006 * 109.47332 * 269.98243 * 27 26 2 41 41 H 1.09004 * 109.47181 * 29.97453 * 27 26 2 42 42 H 1.08994 * 109.47349 * 149.97931 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2860 1.0838 0.0000 4 6 3.5562 0.7063 0.0006 5 6 4.7678 1.4378 0.0013 6 7 4.7503 2.8338 0.0020 7 6 5.9409 3.5474 0.1629 8 6 6.8786 3.1326 1.1011 9 6 8.0559 3.8353 1.2569 10 6 8.2998 4.9626 0.4825 11 8 9.4563 5.6564 0.6394 12 6 9.5810 6.8038 -0.0575 13 1 8.8182 7.0909 -0.7661 14 6 10.6880 7.6152 0.1356 15 7 11.6176 7.2652 0.9988 16 14 10.8603 9.2053 -0.8294 17 1 9.7083 10.0932 -0.5302 18 1 12.1230 9.8846 -0.4428 19 1 10.8870 8.9018 -2.2828 20 6 7.3606 5.3803 -0.4521 21 6 6.1849 4.6758 -0.6112 22 6 5.9554 0.7611 0.0023 23 6 5.9541 -0.6428 0.0031 24 6 4.7894 -1.3240 0.0024 25 7 3.5927 -0.6625 0.0014 26 6 2.2959 -1.0975 0.0005 27 6 1.8333 -2.5317 0.0004 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 3.9116 3.3083 -0.1090 32 1 6.6871 2.2588 1.7063 33 1 8.7863 3.5109 1.9833 34 1 12.3922 7.8332 1.1342 35 1 7.5504 6.2569 -1.0536 36 1 5.4546 5.0008 -1.3375 37 1 6.8895 1.3033 0.0033 38 1 6.8907 -1.1806 0.0035 39 1 4.8024 -2.4039 0.0027 40 1 1.7215 -2.8775 1.0281 41 1 0.8747 -2.6043 -0.5135 42 1 2.5688 -3.1506 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212608301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:35 Heat of formation + Delta-G solvation = 73.672734 kcal Electronic energy + Delta-G solvation = -25551.206146 eV Core-core repulsion = 21883.482161 eV Total energy + Delta-G solvation = -3667.723984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.80964 -41.05663 -39.56796 -38.04057 -36.42717 -34.30828 -33.69529 -33.18701 -31.97793 -30.62456 -29.41114 -28.68450 -27.30615 -26.80964 -24.18356 -23.46489 -23.20955 -22.35136 -21.13585 -19.88054 -19.03669 -18.90214 -18.20102 -17.22945 -17.15957 -16.98653 -16.37197 -16.15421 -15.99993 -15.54563 -15.29863 -14.69408 -14.43878 -14.40466 -14.15634 -13.99226 -13.87969 -13.83588 -13.67074 -13.41608 -13.24719 -13.00424 -12.89084 -12.82152 -12.66626 -12.45830 -12.32454 -12.26399 -12.14119 -11.25367 -11.07627 -10.87602 -10.47606 -9.88309 -9.43271 -8.84465 -8.45524 -7.94864 -6.11846 -0.07851 0.31818 0.47638 0.69557 1.36906 1.46687 1.52464 1.57701 1.86111 2.18717 2.35907 2.57344 2.80399 3.07992 3.14507 3.50548 3.65209 3.83552 4.02414 4.06051 4.06732 4.17767 4.24034 4.32009 4.45718 4.59347 4.63983 4.76994 4.78363 4.86715 4.96101 4.98022 5.03219 5.07144 5.08769 5.13388 5.18191 5.30267 5.37808 5.44518 5.60923 5.65131 5.73719 5.87173 6.02422 6.20460 6.33428 6.61442 6.89554 6.99223 7.78563 8.77073 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.002329 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.029615 B =12021.176619 C =12630.192812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.024 3.976 3 N -0.519 5.519 4 C 0.166 3.834 5 C 0.232 3.768 6 N -0.656 5.656 7 C 0.081 3.919 8 C -0.087 4.087 9 C -0.172 4.172 10 C 0.106 3.894 11 O -0.227 6.227 12 C -0.412 4.412 13 H 0.103 0.897 14 C -0.022 4.022 15 N -0.919 5.919 16 Si 1.016 2.984 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.257 1.257 20 C -0.215 4.215 21 C -0.089 4.089 22 C -0.225 4.225 23 C -0.082 4.082 24 C -0.020 4.020 25 N -0.339 5.339 26 C -0.066 4.066 27 C -0.066 4.066 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.414 0.586 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.181 0.819 39 H 0.194 0.806 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 -19.985 -3.436 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.240 5.240 4 C -0.079 4.079 5 C 0.126 3.874 6 N -0.277 5.277 7 C -0.013 4.013 8 C -0.107 4.107 9 C -0.192 4.192 10 C 0.055 3.945 11 O -0.133 6.133 12 C -0.488 4.488 13 H 0.120 0.880 14 C -0.220 4.220 15 N -0.557 5.557 16 Si 0.836 3.164 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.234 4.234 21 C -0.110 4.110 22 C -0.255 4.255 23 C -0.103 4.103 24 C -0.141 4.141 25 N -0.011 5.011 26 C -0.180 4.180 27 C -0.124 4.124 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.251 0.749 32 H 0.160 0.840 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.198 0.802 39 H 0.211 0.789 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.866 -19.159 -3.202 27.078 hybrid contribution 0.580 0.650 -0.270 0.912 sum -18.285 -18.509 -3.471 26.248 Atomic orbital electron populations 1.20206 0.84779 1.03886 1.03396 1.21328 0.98195 0.87334 1.04186 1.70424 0.98695 1.31359 1.23560 1.20173 0.93207 0.82308 1.12182 1.16636 0.89878 0.83639 0.97217 1.41611 1.07955 1.01671 1.76456 1.17265 0.89038 0.95911 0.99130 1.20769 0.92926 1.00391 0.96593 1.20249 0.99574 0.96474 1.02873 1.19867 0.86725 0.92945 0.94921 1.83952 1.32143 1.34367 1.62887 1.21765 1.08812 0.96896 1.21352 0.87978 1.26543 0.94319 1.02890 0.98235 1.70191 1.10559 1.39713 1.35247 0.84674 0.78483 0.75196 0.78069 1.18285 1.19768 1.18165 1.21085 0.95679 1.03834 1.02845 1.20814 0.96517 0.95557 0.98068 1.20940 0.96513 0.95440 1.12650 1.20884 0.98596 0.92701 0.98086 1.21915 0.81865 0.99988 1.10321 1.42556 1.06897 1.07042 1.44562 1.21670 0.80537 0.99711 1.16123 1.20320 1.02790 0.85430 1.03849 0.90032 0.88385 0.91602 0.74897 0.84035 0.85774 0.91870 0.85465 0.84247 0.84097 0.80208 0.78887 0.89776 0.88089 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.03 71.24 0.71 -0.26 16 2 C 0.02 0.56 7.06 41.60 0.29 0.85 16 3 N -0.52 -15.65 11.31 -182.04 -2.06 -17.71 16 4 C 0.17 4.89 7.69 134.32 1.03 5.93 16 5 C 0.23 6.79 6.46 38.35 0.25 7.04 16 6 N -0.66 -19.77 5.48 -180.10 -0.99 -20.76 16 7 C 0.08 2.72 5.86 38.24 0.22 2.94 16 8 C -0.09 -2.98 7.39 22.39 0.17 -2.81 16 9 C -0.17 -7.08 9.98 22.37 0.22 -6.86 16 10 C 0.11 5.13 6.65 22.60 0.15 5.28 16 11 O -0.23 -13.32 9.75 -22.92 -0.22 -13.55 16 12 C -0.41 -23.52 9.48 67.91 0.64 -22.87 16 13 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 14 C -0.02 -1.24 5.49 84.82 0.47 -0.78 16 15 N -0.92 -55.74 13.67 21.61 0.30 -55.45 16 16 Si 1.02 42.37 29.55 68.60 2.03 44.40 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 C -0.21 -9.12 9.16 22.37 0.20 -8.91 16 21 C -0.09 -3.13 9.96 22.39 0.22 -2.91 16 22 C -0.23 -5.84 8.09 22.43 0.18 -5.66 16 23 C -0.08 -1.54 9.98 22.03 0.22 -1.32 16 24 C -0.02 -0.35 10.85 83.17 0.90 0.55 16 25 N -0.34 -7.99 2.95 -338.29 -1.00 -8.99 16 26 C -0.07 -1.33 7.03 41.07 0.29 -1.04 16 27 C -0.07 -0.64 9.91 71.23 0.71 0.06 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 0.90 7.76 -2.38 -0.02 0.88 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.41 11.97 8.86 -92.71 -0.82 11.15 16 32 H 0.14 4.26 6.69 -2.91 -0.02 4.24 16 33 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.13 5.44 5.63 -2.91 -0.02 5.42 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.14 3.92 5.37 -2.91 -0.02 3.90 16 38 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.10 0.62 7.77 -2.38 -0.02 0.60 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -75.11 355.53 5.20 -69.91 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.25 Total: 32.92 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 6.89 Total: -30.77 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -3.75 Total: -102.90 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.22 Total: -13.55 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -75.11 5.20 -69.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.581 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds