Wall clock time and date at job start Tue Mar 31 2020 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30250 * 126.09816 * 2 1 4 4 N 1.39855 * 110.08818 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.47178 * 179.97438 * 4 3 2 6 6 C 1.37247 * 109.06080 * 359.97438 * 4 3 2 7 7 C 1.39289 * 133.66681 * 180.28766 * 6 4 3 8 8 C 1.36474 * 120.10008 * 180.14701 * 7 6 4 9 9 C 1.39590 * 120.74461 * 359.55606 * 8 7 6 10 10 N 1.39937 * 119.83802 * 180.22396 * 9 8 7 11 11 C 1.39768 * 120.00100 * 154.14367 * 10 9 8 12 12 C 1.38983 * 120.00464 * 328.83220 * 11 10 9 13 13 C 1.37995 * 119.98572 * 179.78577 * 12 11 10 14 14 C 1.38916 * 120.01057 * 0.47146 * 13 12 11 15 15 O 1.35784 * 119.98906 * 179.76867 * 14 13 12 16 16 C 1.34813 * 116.99546 * 186.86169 * 15 14 13 17 17 H 1.07998 * 120.00443 * 354.60521 * 16 15 14 18 18 C 1.38613 * 119.99842 * 174.60842 * 16 15 14 19 19 N 1.31586 * 120.00072 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99690 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47201 * 90.00413 * 20 18 16 22 22 H 1.48503 * 109.46935 * 209.99646 * 20 18 16 23 23 H 1.48493 * 109.47691 * 329.99946 * 20 18 16 24 24 C 1.38911 * 120.01500 * 359.77984 * 14 13 12 25 25 C 1.37992 * 120.00977 * 359.97438 * 24 14 13 26 26 C 1.38071 * 120.31986 * 0.19934 * 9 8 7 27 27 C 1.39968 * 119.46513 * 0.02672 * 26 9 8 28 28 H 1.09003 * 109.47262 * 89.97506 * 1 2 3 29 29 H 1.09005 * 109.47545 * 209.97547 * 1 2 3 30 30 H 1.09002 * 109.47341 * 329.97286 * 1 2 3 31 31 H 1.08999 * 109.47180 * 270.02404 * 5 4 3 32 32 H 1.09001 * 109.46788 * 30.02807 * 5 4 3 33 33 H 1.08996 * 109.47167 * 150.02260 * 5 4 3 34 34 H 1.08003 * 119.95279 * 359.97438 * 7 6 4 35 35 H 1.07998 * 119.62975 * 179.77728 * 8 7 6 36 36 H 0.97004 * 119.99694 * 334.14850 * 10 9 8 37 37 H 1.07993 * 120.00710 * 0.02562 * 12 11 10 38 38 H 1.08005 * 119.99250 * 180.25155 * 13 12 11 39 39 H 0.96999 * 119.99456 * 179.97438 * 19 18 16 40 40 H 1.07996 * 119.99470 * 179.97438 * 24 14 13 41 41 H 1.07994 * 120.00857 * 179.97438 * 25 24 14 42 42 H 1.08004 * 120.26847 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0524 0.0000 4 7 3.6187 0.6667 -0.0006 5 6 4.7649 1.5791 -0.0013 6 6 3.6917 -0.7038 -0.0004 7 6 4.7490 -1.6106 0.0043 8 6 4.5000 -2.9524 0.0000 9 6 3.1902 -3.4351 0.0002 10 7 2.9566 -4.8148 0.0005 11 6 1.7660 -5.3220 0.5286 12 6 1.1339 -4.6626 1.5761 13 6 -0.0439 -5.1612 2.0942 14 6 -0.5925 -6.3273 1.5755 15 8 -1.7489 -6.8201 2.0888 16 6 -2.1527 -8.0257 1.6405 17 1 -1.6118 -8.5145 0.8437 18 6 -3.2622 -8.6380 2.2022 19 7 -3.9210 -8.0427 3.1733 20 14 -3.8220 -10.3082 1.5804 21 1 -3.1471 -11.3778 2.3587 22 1 -5.2929 -10.4298 1.7446 23 1 -3.4713 -10.4448 0.1440 24 6 0.0419 -6.9894 0.5320 25 6 1.2170 -6.4886 0.0099 26 6 2.1240 -2.5578 0.0006 27 6 2.3667 -1.1793 0.0003 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3634 0.8897 0.5143 31 1 5.0484 1.8055 -1.0291 32 1 4.4953 2.5015 0.5130 33 1 5.6038 1.1090 0.5118 34 1 5.7675 -1.2513 0.0085 35 1 5.3255 -3.6487 0.0001 36 1 3.6211 -5.4193 -0.3657 37 1 1.5623 -3.7582 1.9819 38 1 -0.5374 -4.6467 2.9055 39 1 -4.6976 -8.4711 3.5660 40 1 -0.3847 -7.8961 0.1292 41 1 1.7104 -7.0036 -0.8011 42 1 1.1109 -2.9321 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212609263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:19 Heat of formation + Delta-G solvation = 77.658403 kcal Electronic energy + Delta-G solvation = -25591.220733 eV Core-core repulsion = 21923.669580 eV Total energy + Delta-G solvation = -3667.551153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22433 -40.88962 -39.49818 -37.79305 -35.33067 -34.93019 -34.07117 -31.98222 -31.16306 -30.46863 -30.25155 -28.61209 -27.15691 -25.88355 -24.25929 -23.61133 -22.87638 -22.01479 -20.69383 -19.80176 -18.95372 -18.51390 -17.89049 -17.61624 -16.56443 -16.49344 -16.25517 -15.81912 -15.51573 -15.47121 -15.30349 -14.94506 -14.45705 -14.41120 -14.23578 -14.16820 -13.88469 -13.78083 -13.50131 -13.47015 -13.22943 -13.08062 -12.93112 -12.77616 -12.49396 -12.33692 -12.10895 -12.05580 -11.62816 -11.31224 -11.11862 -10.75913 -10.36431 -9.80543 -9.54938 -8.85817 -8.40867 -7.75885 -6.05972 -0.03245 0.42105 0.56169 0.95867 1.38412 1.47541 1.48068 1.53933 1.55463 2.21986 2.49381 2.78245 2.93907 3.21898 3.50639 3.55900 3.60887 3.77295 4.10396 4.15118 4.17868 4.33090 4.36791 4.44829 4.51425 4.54022 4.63674 4.67898 4.71818 4.74082 4.84108 4.85998 5.02574 5.06656 5.12340 5.22693 5.31403 5.36558 5.46688 5.53871 5.59223 5.70624 5.75297 6.00526 6.08570 6.18465 6.59296 6.69686 6.96594 7.04532 7.87772 8.82815 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023336 B = 0.002556 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.565840 B =10953.875652 C =11817.973508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.078 3.922 3 N -0.279 5.279 4 N -0.418 5.418 5 C 0.105 3.895 6 C 0.080 3.920 7 C -0.103 4.103 8 C -0.104 4.104 9 C 0.150 3.850 10 N -0.674 5.674 11 C 0.110 3.890 12 C -0.106 4.106 13 C -0.169 4.169 14 C 0.091 3.909 15 O -0.235 6.235 16 C -0.407 4.407 17 H 0.103 0.897 18 C -0.026 4.026 19 N -0.924 5.924 20 Si 1.017 2.983 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.208 4.208 25 C -0.106 4.106 26 C -0.118 4.118 27 C -0.164 4.164 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.418 0.582 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.278 13.144 -9.231 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 N -0.095 5.095 4 N -0.208 5.208 5 C -0.035 4.035 6 C -0.034 4.034 7 C -0.125 4.125 8 C -0.127 4.127 9 C 0.050 3.950 10 N -0.300 5.300 11 C 0.013 3.987 12 C -0.127 4.127 13 C -0.189 4.189 14 C 0.041 3.959 15 O -0.143 6.143 16 C -0.484 4.484 17 H 0.120 0.880 18 C -0.223 4.223 19 N -0.563 5.563 20 Si 0.836 3.164 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.175 1.175 24 C -0.228 4.228 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.257 0.743 37 H 0.149 0.851 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.084 14.661 -8.902 26.411 hybrid contribution -0.584 -1.612 -0.019 1.715 sum 19.501 13.048 -8.921 25.102 Atomic orbital electron populations 1.20305 0.84545 1.04255 1.04138 1.23884 0.97636 0.88655 0.99701 1.76396 0.88443 1.24196 1.20421 1.48324 1.03954 1.03099 1.65467 1.22011 0.84235 0.93331 1.03943 1.19063 0.95790 0.85006 1.03563 1.19894 0.97621 0.90840 1.04113 1.20684 0.95031 0.95502 1.01504 1.17578 0.93396 0.83423 1.00554 1.41655 1.18567 1.03457 1.66334 1.17324 0.90009 0.95984 0.95374 1.20604 0.95255 1.01142 0.95697 1.20206 0.98276 0.96935 1.03481 1.19798 0.87321 0.94585 0.94237 1.83947 1.33973 1.34767 1.61581 1.21792 1.13073 0.93806 1.19708 0.88013 1.26548 0.95749 1.03890 0.96118 1.70206 1.19682 1.40516 1.25885 0.84608 0.77658 0.74906 0.79191 1.18960 1.19904 1.17527 1.21092 0.98652 1.03057 0.99973 1.20729 0.94840 0.97054 1.00125 1.20271 0.98892 0.90267 1.04887 1.19745 0.92615 0.93694 1.11135 0.89110 0.90024 0.89560 0.90326 0.89285 0.87548 0.82258 0.81942 0.74335 0.85122 0.86864 0.92055 0.85776 0.83529 0.86483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.48 71.23 0.75 -0.84 16 2 C 0.08 2.10 7.43 44.79 0.33 2.43 16 3 N -0.28 -7.59 12.40 -43.69 -0.54 -8.14 16 4 N -0.42 -9.50 4.05 -360.91 -1.46 -10.96 16 5 C 0.10 1.29 11.40 127.77 1.46 2.74 16 6 C 0.08 1.88 6.87 39.17 0.27 2.15 16 7 C -0.10 -1.75 9.94 22.11 0.22 -1.53 16 8 C -0.10 -1.78 9.85 22.18 0.22 -1.57 16 9 C 0.15 3.48 6.05 38.13 0.23 3.71 16 10 N -0.67 -15.50 5.47 -180.35 -0.99 -16.49 16 11 C 0.11 3.37 5.93 38.23 0.23 3.60 16 12 C -0.11 -3.68 7.73 22.39 0.17 -3.51 16 13 C -0.17 -7.21 9.98 22.37 0.22 -6.98 16 14 C 0.09 4.44 6.64 22.59 0.15 4.59 16 15 O -0.24 -14.08 9.75 -22.94 -0.22 -14.31 16 16 C -0.41 -23.51 9.48 67.91 0.64 -22.87 16 17 H 0.10 5.33 5.21 -2.91 -0.02 5.31 16 18 C -0.03 -1.49 5.49 84.82 0.47 -1.03 16 19 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 20 Si 1.02 42.76 29.55 68.60 2.03 44.78 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 24 C -0.21 -8.72 9.16 22.37 0.20 -8.51 16 25 C -0.11 -3.47 9.95 22.39 0.22 -3.25 16 26 C -0.12 -3.23 7.90 22.65 0.18 -3.05 16 27 C -0.16 -4.48 6.33 -20.25 -0.13 -4.61 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 0.75 8.13 -2.39 -0.02 0.73 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.42 7.07 8.89 -92.71 -0.82 6.25 16 37 H 0.13 4.17 6.53 -2.91 -0.02 4.15 16 38 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.12 5.25 5.65 -2.91 -0.02 5.23 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.12 3.56 6.31 -2.91 -0.02 3.54 16 Total: -1.00 -76.69 358.81 5.19 -71.50 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.25 Total: 28.82 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 5.84 Total: -38.52 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.70 Total: -92.28 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.22 Total: -14.31 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.69 5.19 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.159 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds