Wall clock time and date at job start Tue Mar 31 2020 13:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00474 * 317.80823 * 3 2 1 5 5 N 3.51037 * 140.68467 * 317.81576 * 2 1 3 6 6 C 1.36552 * 119.99615 * 137.80476 * 3 2 1 7 7 C 1.50700 * 119.99765 * 185.62045 * 6 3 2 8 8 O 1.42899 * 109.47075 * 235.12863 * 7 6 3 9 9 C 1.42903 * 114.00090 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88447 * 32.43359 * 9 8 7 11 11 C 1.55157 * 111.00354 * 156.34904 * 9 8 7 12 12 C 1.54342 * 103.01767 * 153.38419 * 11 9 8 13 13 N 1.47016 * 107.26586 * 338.14339 * 12 11 9 14 14 C 1.36938 * 125.64822 * 178.85032 * 13 12 11 15 15 H 1.08003 * 119.99778 * 179.69552 * 14 13 12 16 16 C 1.38808 * 120.00049 * 359.69088 * 14 13 12 17 17 N 1.31617 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99940 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47288 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47441 * 299.99786 * 18 16 14 21 21 H 1.48504 * 109.47479 * 60.00176 * 18 16 14 22 22 C 1.47431 * 108.70523 * 358.58705 * 13 12 11 23 23 C 1.46754 * 119.99995 * 5.62649 * 6 3 2 24 24 C 1.40051 * 120.18674 * 244.71896 * 23 6 3 25 25 C 1.37837 * 119.79847 * 179.78974 * 24 23 6 26 26 C 1.38439 * 120.19285 * 0.46924 * 25 24 23 27 27 C 1.38444 * 120.38752 * 359.78033 * 26 25 24 28 28 C 1.37822 * 120.19222 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46746 * 115.13581 * 7 6 3 30 30 H 1.08998 * 109.47646 * 355.13215 * 7 6 3 31 31 H 1.08997 * 110.72638 * 271.93963 * 11 9 8 32 32 H 1.09000 * 110.71907 * 35.04484 * 11 9 8 33 33 H 1.08995 * 109.98920 * 218.66774 * 12 11 9 34 34 H 1.08999 * 109.77909 * 97.49772 * 12 11 9 35 35 H 0.97003 * 119.99687 * 179.97438 * 17 16 14 36 36 H 1.08994 * 110.36905 * 143.19358 * 22 13 12 37 37 H 1.09007 * 110.36027 * 265.40633 * 22 13 12 38 38 H 1.07999 * 120.10261 * 0.02562 * 24 23 6 39 39 H 1.08000 * 119.90096 * 180.22996 * 25 24 23 40 40 H 1.08005 * 119.80320 * 179.76880 * 26 25 24 41 41 H 1.08001 * 119.90259 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.10056 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -0.9178 0.8328 5 7 3.8519 -1.6481 1.4935 6 6 3.2503 0.8771 -0.7943 7 6 4.7519 0.7943 -0.8911 8 8 5.3212 2.0622 -0.5592 9 6 6.7486 2.0925 -0.6210 10 1 7.1183 1.4230 -1.3976 11 6 7.2652 3.5390 -0.8405 12 6 8.6744 3.5040 -0.2119 13 7 8.7007 2.3825 0.7383 14 6 9.7794 1.9975 1.4888 15 1 9.6954 1.1593 2.1647 16 6 10.9808 2.6843 1.3808 17 7 11.0832 3.7054 0.5567 18 14 12.4525 2.1586 2.4041 19 1 13.6051 3.0464 2.1062 20 1 12.1125 2.2552 3.8464 21 1 12.8102 0.7559 2.0727 22 6 7.3714 1.7450 0.7541 23 6 2.5213 1.8997 -1.5535 24 6 2.5254 1.8736 -2.9538 25 6 1.8343 2.8356 -3.6588 26 6 1.1457 3.8310 -2.9869 27 6 1.1407 3.8673 -1.6030 28 6 1.8221 2.9106 -0.8820 29 1 5.0359 0.5235 -1.9081 30 1 5.1196 0.0381 -0.1976 31 1 7.3205 3.7716 -1.9039 32 1 6.6306 4.2579 -0.3222 33 1 8.8718 4.4389 0.3124 34 1 9.4216 3.3480 -0.9901 35 1 11.9226 4.1856 0.4815 36 1 7.4699 0.6651 0.8640 37 1 6.7642 2.1540 1.5618 38 1 3.0651 1.1000 -3.4796 39 1 1.8333 2.8149 -4.7386 40 1 0.6095 4.5838 -3.5457 41 1 0.6012 4.6477 -1.0868 42 1 1.8168 2.9401 0.1975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224299850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:31 Heat of formation + Delta-G solvation = 92.132210 kcal Electronic energy + Delta-G solvation = -25740.508728 eV Core-core repulsion = 22073.585207 eV Total energy + Delta-G solvation = -3666.923521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.02921 -38.57189 -37.88111 -36.56901 -36.16342 -34.57570 -32.19286 -31.29166 -30.65907 -29.36773 -28.06065 -26.86555 -24.42610 -24.05924 -22.79196 -21.03212 -20.58055 -20.45112 -20.10811 -17.63165 -17.05503 -16.65236 -16.32532 -15.46396 -15.40004 -14.97561 -14.67062 -14.52424 -14.29831 -14.15034 -13.92490 -13.75507 -13.53876 -13.31890 -13.24948 -13.01770 -12.88501 -12.77617 -12.36943 -12.33459 -11.98788 -11.77623 -11.50417 -11.41339 -11.15955 -10.96241 -10.77754 -10.29236 -10.14730 -9.93165 -9.85089 -9.74455 -9.29996 -9.25435 -8.98563 -8.62509 -6.87762 -5.74092 -3.08333 -0.07884 0.97075 1.11436 1.99736 2.39841 2.41422 3.07515 3.23974 3.36565 3.40030 3.44282 3.45322 3.56481 3.94845 4.21873 4.49395 4.59988 4.62696 4.77764 4.82260 4.91496 5.09067 5.11856 5.24055 5.32639 5.36960 5.40385 5.51678 5.58025 5.66814 5.70760 5.75859 6.06951 6.10775 6.16627 6.19770 6.39091 6.46652 6.59264 6.60627 6.61961 6.98412 7.14545 7.35134 7.51993 7.56685 7.78706 8.22101 9.18671 9.78493 10.43153 11.37514 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003018 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.329779 B = 9275.759774 C =10635.307322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.262 3.738 3 C 0.008 3.992 4 C 0.252 3.748 5 N -0.380 5.380 6 C 0.102 3.898 7 C 0.081 3.919 8 O -0.362 6.362 9 C 0.071 3.929 10 H 0.071 0.929 11 C -0.135 4.135 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.117 3.883 23 C -0.081 4.081 24 C -0.086 4.086 25 C -0.121 4.121 26 C -0.103 4.103 27 C -0.118 4.118 28 C -0.079 4.079 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.253 0.747 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.765 -1.581 -10.058 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.065 5.065 2 C -0.055 4.055 3 C 0.001 3.999 4 C -0.064 4.064 5 N -0.055 5.055 6 C 0.093 3.907 7 C 0.004 3.996 8 O -0.281 6.281 9 C 0.014 3.986 10 H 0.089 0.911 11 C -0.173 4.173 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.010 4.010 23 C -0.082 4.082 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.136 4.136 28 C -0.097 4.097 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.535 -2.504 -8.930 22.532 hybrid contribution 1.232 -0.143 0.274 1.270 sum -19.303 -2.647 -8.656 21.320 Atomic orbital electron populations 1.81274 1.11175 1.07014 1.07027 1.24765 0.91526 0.94563 0.94639 1.13302 0.84137 1.00406 1.02049 1.24818 0.94335 0.93395 0.93868 1.81391 1.06988 1.08845 1.08274 1.21419 0.95151 0.87782 0.86370 1.21607 0.86901 0.89227 1.01830 1.87967 1.21486 1.28579 1.90042 1.23547 0.77538 0.99161 0.98403 0.91073 1.22981 0.99420 0.94169 1.00739 1.21187 0.89504 0.91752 0.92194 1.44332 1.06670 1.33774 1.48312 1.19018 0.88130 1.11896 1.16804 0.90435 1.24801 0.97869 0.97985 0.99652 1.69937 1.25461 1.22139 1.39444 0.86183 0.82083 0.77649 0.79744 1.21545 1.21114 1.21131 1.21934 0.88343 0.96429 0.94280 1.18602 0.99833 0.96226 0.93502 1.21250 0.98322 0.98869 0.91982 1.21071 0.97762 0.94850 1.00170 1.21365 0.98232 0.98015 0.94529 1.21087 0.99469 0.98811 0.94265 1.21317 0.94782 0.93456 1.00190 0.89542 0.91116 0.91671 0.91363 0.93521 0.93224 0.93629 0.94432 0.95395 0.85252 0.85436 0.85760 0.85441 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.60 18.54 41.84 0.78 -3.83 16 2 C 0.26 2.65 13.74 -22.47 -0.31 2.34 16 3 C 0.01 0.07 5.72 -106.66 -0.61 -0.54 16 4 C 0.25 2.79 13.44 -22.46 -0.30 2.48 16 5 N -0.38 -5.11 18.54 41.86 0.78 -4.33 16 6 C 0.10 0.92 5.21 -101.79 -0.53 0.39 16 7 C 0.08 0.84 5.90 36.01 0.21 1.05 16 8 O -0.36 -5.04 9.99 -35.23 -0.35 -5.39 16 9 C 0.07 1.18 3.49 -24.59 -0.09 1.10 16 10 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 11 C -0.13 -2.42 6.68 -24.89 -0.17 -2.59 16 12 C 0.18 4.21 5.38 -3.06 -0.02 4.19 16 13 N -0.60 -15.25 3.39 -170.07 -0.58 -15.82 16 14 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 15 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 18 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.12 2.39 6.97 -2.53 -0.02 2.37 16 23 C -0.08 -0.73 4.41 -105.10 -0.46 -1.20 16 24 C -0.09 -0.67 9.79 -39.05 -0.38 -1.05 16 25 C -0.12 -0.87 10.03 -39.65 -0.40 -1.26 16 26 C -0.10 -0.76 10.04 -39.43 -0.40 -1.15 16 27 C -0.12 -0.95 10.03 -39.66 -0.40 -1.35 16 28 C -0.08 -0.72 9.06 -39.05 -0.35 -1.08 16 29 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 30 H 0.07 0.77 6.39 -51.93 -0.33 0.44 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.22 7.52 -51.93 -0.39 0.83 16 34 H 0.05 1.28 7.37 -51.93 -0.38 0.90 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -32.12 373.58 -7.95 -40.07 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.29 Total: -4.03 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -4.47 Total: -3.12 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.55 Total: -50.10 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.35 Total: -5.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.12 -7.95 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224299850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.200 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds