Wall clock time and date at job start Tue Mar 31 2020 13:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00474 * 317.80823 * 3 2 1 5 5 N 3.51037 * 140.68467 * 317.81576 * 2 1 3 6 6 C 1.36552 * 119.99615 * 137.80476 * 3 2 1 7 7 C 1.50700 * 119.99765 * 185.62045 * 6 3 2 8 8 O 1.42899 * 109.47075 * 235.12863 * 7 6 3 9 9 C 1.42903 * 114.00090 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88447 * 32.43359 * 9 8 7 11 11 C 1.55157 * 111.00354 * 156.34904 * 9 8 7 12 12 C 1.54342 * 103.01767 * 153.38419 * 11 9 8 13 13 N 1.47016 * 107.26586 * 338.14339 * 12 11 9 14 14 C 1.36938 * 125.64822 * 178.85032 * 13 12 11 15 15 H 1.08003 * 119.99778 * 179.69552 * 14 13 12 16 16 C 1.38808 * 120.00049 * 359.69088 * 14 13 12 17 17 N 1.31617 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99940 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47288 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.47441 * 299.99786 * 18 16 14 21 21 H 1.48504 * 109.47479 * 60.00176 * 18 16 14 22 22 C 1.47431 * 108.70523 * 358.58705 * 13 12 11 23 23 C 1.46754 * 119.99995 * 5.62649 * 6 3 2 24 24 C 1.40051 * 120.18674 * 244.71896 * 23 6 3 25 25 C 1.37837 * 119.79847 * 179.78974 * 24 23 6 26 26 C 1.38439 * 120.19285 * 0.46924 * 25 24 23 27 27 C 1.38444 * 120.38752 * 359.78033 * 26 25 24 28 28 C 1.37822 * 120.19222 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46746 * 115.13581 * 7 6 3 30 30 H 1.08998 * 109.47646 * 355.13215 * 7 6 3 31 31 H 1.08997 * 110.72638 * 271.93963 * 11 9 8 32 32 H 1.09000 * 110.71907 * 35.04484 * 11 9 8 33 33 H 1.08995 * 109.98920 * 218.66774 * 12 11 9 34 34 H 1.08999 * 109.77909 * 97.49772 * 12 11 9 35 35 H 0.97003 * 119.99687 * 179.97438 * 17 16 14 36 36 H 1.08994 * 110.36905 * 143.19358 * 22 13 12 37 37 H 1.09007 * 110.36027 * 265.40633 * 22 13 12 38 38 H 1.07999 * 120.10261 * 0.02562 * 24 23 6 39 39 H 1.08000 * 119.90096 * 180.22996 * 25 24 23 40 40 H 1.08005 * 119.80320 * 179.76880 * 26 25 24 41 41 H 1.08001 * 119.90259 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.10056 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -0.9178 0.8328 5 7 3.8519 -1.6481 1.4935 6 6 3.2503 0.8771 -0.7943 7 6 4.7519 0.7943 -0.8911 8 8 5.3212 2.0622 -0.5592 9 6 6.7486 2.0925 -0.6210 10 1 7.1183 1.4230 -1.3976 11 6 7.2652 3.5390 -0.8405 12 6 8.6744 3.5040 -0.2119 13 7 8.7007 2.3825 0.7383 14 6 9.7794 1.9975 1.4888 15 1 9.6954 1.1593 2.1647 16 6 10.9808 2.6843 1.3808 17 7 11.0832 3.7054 0.5567 18 14 12.4525 2.1586 2.4041 19 1 13.6051 3.0464 2.1062 20 1 12.1125 2.2552 3.8464 21 1 12.8102 0.7559 2.0727 22 6 7.3714 1.7450 0.7541 23 6 2.5213 1.8997 -1.5535 24 6 2.5254 1.8736 -2.9538 25 6 1.8343 2.8356 -3.6588 26 6 1.1457 3.8310 -2.9869 27 6 1.1407 3.8673 -1.6030 28 6 1.8221 2.9106 -0.8820 29 1 5.0359 0.5235 -1.9081 30 1 5.1196 0.0381 -0.1976 31 1 7.3205 3.7716 -1.9039 32 1 6.6306 4.2579 -0.3222 33 1 8.8718 4.4389 0.3124 34 1 9.4216 3.3480 -0.9901 35 1 11.9226 4.1856 0.4815 36 1 7.4699 0.6651 0.8640 37 1 6.7642 2.1540 1.5618 38 1 3.0651 1.1000 -3.4796 39 1 1.8333 2.8149 -4.7386 40 1 0.6095 4.5838 -3.5457 41 1 0.6012 4.6477 -1.0868 42 1 1.8168 2.9401 0.1975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224299850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:30 Heat of formation + Delta-G solvation = 75.059754 kcal Electronic energy + Delta-G solvation = -25741.249046 eV Core-core repulsion = 22073.585207 eV Total energy + Delta-G solvation = -3667.663839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.77176 -39.74746 -38.78299 -37.65038 -37.40560 -35.53017 -34.08879 -31.84790 -31.30968 -31.13326 -29.29606 -28.28129 -26.25541 -24.81910 -23.35984 -22.10459 -21.86174 -21.66611 -21.39850 -18.99203 -18.29524 -17.80130 -17.05611 -16.70306 -16.52800 -16.16786 -15.75732 -15.63116 -15.39352 -15.19339 -15.07239 -14.67308 -14.48437 -14.30525 -14.21788 -14.06479 -13.88604 -13.85389 -13.68055 -13.64295 -13.38086 -12.98963 -12.86070 -12.71781 -12.37794 -12.11718 -12.07077 -12.03465 -11.95439 -11.76637 -11.42439 -10.75799 -10.69440 -10.46819 -9.82178 -9.61398 -8.91048 -7.85253 -5.21479 -0.84012 0.35847 0.55093 1.13376 1.46874 1.49630 1.54046 1.54625 1.56009 2.17590 2.41432 2.47904 2.60478 2.85439 3.03121 3.33389 3.42542 3.76304 3.82243 4.03171 4.03802 4.06711 4.13960 4.19842 4.24278 4.31342 4.40153 4.51759 4.62300 4.67647 4.73504 4.78477 4.99477 5.01328 5.04665 5.11085 5.17794 5.44815 5.48408 5.56045 5.65189 5.67050 5.76261 6.06642 6.12132 6.14224 6.23960 6.30302 7.10260 7.76255 8.39458 9.24536 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.003018 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.329779 B = 9275.759774 C =10635.307322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.281 3.719 3 C 0.010 3.990 4 C 0.276 3.724 5 N -0.424 5.424 6 C 0.127 3.873 7 C 0.072 3.928 8 O -0.364 6.364 9 C 0.095 3.905 10 H 0.091 0.909 11 C -0.121 4.121 12 C 0.185 3.815 13 N -0.625 5.625 14 C -0.247 4.247 15 H 0.079 0.921 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.292 1.292 20 H -0.280 1.280 21 H -0.276 1.276 22 C 0.111 3.889 23 C -0.100 4.100 24 C -0.089 4.089 25 C -0.126 4.126 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.097 4.097 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.008 0.992 34 H 0.021 0.979 35 H 0.248 0.752 36 H 0.041 0.959 37 H 0.020 0.980 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.814 -1.986 -11.732 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.035 4.035 3 C 0.002 3.998 4 C -0.040 4.040 5 N -0.099 5.099 6 C 0.118 3.882 7 C -0.004 4.004 8 O -0.283 6.283 9 C 0.037 3.963 10 H 0.109 0.891 11 C -0.159 4.159 12 C 0.060 3.940 13 N -0.353 5.353 14 C -0.376 4.376 15 H 0.097 0.903 16 C -0.255 4.255 17 N -0.597 5.597 18 Si 0.805 3.195 19 H -0.218 1.218 20 H -0.206 1.206 21 H -0.202 1.202 22 C -0.015 4.015 23 C -0.101 4.101 24 C -0.107 4.107 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.149 4.149 28 C -0.115 4.115 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.627 -2.929 -10.601 24.263 hybrid contribution 1.467 0.024 0.767 1.655 sum -20.160 -2.905 -9.834 22.618 Atomic orbital electron populations 1.81293 1.11964 1.08078 1.08033 1.24705 0.91405 0.93654 0.93774 1.13078 0.83534 1.00720 1.02421 1.24931 0.93409 0.92639 0.93038 1.81417 1.08389 1.10351 1.09769 1.21290 0.94454 0.87093 0.85366 1.21888 0.87251 0.87507 1.03773 1.87947 1.19543 1.30525 1.90239 1.23134 0.78943 0.98151 0.96120 0.89085 1.22781 0.95684 0.95499 1.01923 1.20949 0.92508 0.89646 0.90932 1.44631 1.07819 1.34643 1.48227 1.19389 0.89290 1.11858 1.17097 0.90307 1.25616 1.00512 0.98276 1.01065 1.70150 1.25621 1.23100 1.40792 0.85179 0.78602 0.77429 0.78275 1.21782 1.20618 1.20175 1.22109 0.86466 0.96207 0.96728 1.18685 1.00741 0.96371 0.94258 1.21575 0.98227 0.99469 0.91445 1.21429 0.97094 0.94360 1.01470 1.21707 0.97913 0.98453 0.94386 1.21327 0.99587 0.99019 0.94961 1.21450 0.95526 0.94219 1.00341 0.86038 0.91539 0.88746 0.91003 0.97398 0.96040 0.94228 0.94020 0.96216 0.83041 0.83143 0.83760 0.84321 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.52 18.54 19.00 0.35 -9.17 16 2 C 0.28 5.37 13.74 88.33 1.21 6.58 16 3 C 0.01 0.16 5.72 -21.18 -0.12 0.04 16 4 C 0.28 5.80 13.44 88.32 1.19 6.99 16 5 N -0.42 -11.20 18.54 19.01 0.35 -10.85 16 6 C 0.13 1.99 5.21 -18.03 -0.09 1.90 16 7 C 0.07 1.26 5.90 71.24 0.42 1.68 16 8 O -0.36 -9.08 9.99 -148.98 -1.49 -10.56 16 9 C 0.09 2.91 3.49 31.98 0.11 3.03 16 10 H 0.09 2.49 7.90 -2.39 -0.02 2.47 16 11 C -0.12 -4.14 6.68 31.79 0.21 -3.92 16 12 C 0.18 8.85 5.38 86.74 0.47 9.32 16 13 N -0.63 -31.95 3.39 -691.97 -2.35 -34.30 16 14 C -0.25 -13.92 10.28 84.03 0.86 -13.06 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 16 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 17 N -0.95 -56.28 10.31 21.65 0.22 -56.06 16 18 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 C 0.11 4.45 6.97 86.85 0.61 5.05 16 23 C -0.10 -1.56 4.41 -20.17 -0.09 -1.65 16 24 C -0.09 -1.09 9.79 22.61 0.22 -0.87 16 25 C -0.13 -1.39 10.03 22.22 0.22 -1.17 16 26 C -0.11 -1.27 10.04 22.37 0.22 -1.05 16 27 C -0.13 -1.88 10.03 22.22 0.22 -1.66 16 28 C -0.10 -1.62 9.06 22.61 0.20 -1.42 16 29 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 30 H 0.07 1.28 6.39 -2.39 -0.02 1.26 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.01 0.43 7.52 -2.39 -0.02 0.41 16 34 H 0.02 1.13 7.37 -2.39 -0.02 1.11 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -71.16 373.58 6.50 -64.66 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.04 Total: 1.88 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.34 Total: 6.78 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -1.42 Total: -110.38 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -1.49 Total: -10.56 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.16 6.50 -64.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224299850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.718 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds