Wall clock time and date at job start Tue Mar 31 2020 13:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99687 * 162.75774 * 3 2 1 5 5 N 3.51041 * 140.69336 * 162.75494 * 2 1 3 6 6 C 1.36543 * 120.00596 * 342.75838 * 3 2 1 7 7 C 1.50698 * 120.00337 * 185.07559 * 6 3 2 8 8 O 1.42900 * 109.47341 * 235.53867 * 7 6 3 9 9 C 1.42902 * 114.00160 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.78215 * 328.22212 * 9 8 7 11 11 C 1.55157 * 110.71885 * 204.97904 * 9 8 7 12 12 C 1.55137 * 101.48019 * 205.97023 * 11 9 8 13 13 N 1.47420 * 104.72134 * 37.30244 * 12 11 9 14 14 C 1.36946 * 125.64727 * 155.81866 * 13 12 11 15 15 H 1.08000 * 119.99562 * 190.60765 * 14 13 12 16 16 C 1.38809 * 119.99631 * 10.60312 * 14 13 12 17 17 N 1.31619 * 120.00409 * 29.38694 * 16 14 13 18 18 Si 1.86804 * 119.99605 * 209.38492 * 16 14 13 19 19 H 1.48498 * 109.47333 * 90.00126 * 18 16 14 20 20 H 1.48503 * 109.46872 * 330.00176 * 18 16 14 21 21 H 1.48500 * 109.47048 * 210.00330 * 18 16 14 22 22 C 1.47019 * 108.70595 * 335.54305 * 13 12 11 23 23 C 1.46756 * 119.99803 * 5.07649 * 6 3 2 24 24 C 1.40055 * 120.18861 * 244.72737 * 23 6 3 25 25 C 1.37831 * 119.80438 * 179.74438 * 24 23 6 26 26 C 1.38448 * 120.18924 * 0.55577 * 25 24 23 27 27 C 1.38446 * 120.38577 * 359.68994 * 26 25 24 28 28 C 1.37825 * 120.19437 * 0.02945 * 27 26 25 29 29 H 1.09003 * 109.47352 * 115.54314 * 7 6 3 30 30 H 1.09000 * 109.47044 * 355.54128 * 7 6 3 31 31 H 1.08993 * 111.00662 * 324.20761 * 11 9 8 32 32 H 1.08994 * 111.00358 * 88.06768 * 11 9 8 33 33 H 1.08994 * 110.49941 * 278.45119 * 12 11 9 34 34 H 1.09004 * 110.33707 * 156.06260 * 12 11 9 35 35 H 0.97003 * 119.99912 * 5.66029 * 17 16 14 36 36 H 1.09003 * 109.88285 * 120.70562 * 22 13 12 37 37 H 1.08995 * 109.88630 * 241.72264 * 22 13 12 38 38 H 1.08003 * 120.09399 * 0.02562 * 24 23 6 39 39 H 1.07997 * 119.90512 * 180.26873 * 25 24 23 40 40 H 1.07995 * 119.80672 * 179.72471 * 26 25 24 41 41 H 1.07995 * 119.90147 * 180.02562 * 27 26 25 42 42 H 1.07995 * 120.10380 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2834 1.1854 -0.3676 5 7 3.8522 2.1238 -0.6592 6 6 3.2513 -1.1283 0.3505 7 6 4.7538 -1.0958 0.4615 8 8 5.3157 -2.1039 -0.3812 9 6 6.7433 -2.1581 -0.3502 10 1 7.1643 -1.1673 -0.1795 11 6 7.2980 -2.7716 -1.6630 12 6 8.6546 -3.3518 -1.1836 13 7 8.3831 -3.8702 0.1695 14 6 9.0925 -4.8547 0.8042 15 1 8.7170 -5.2855 1.7206 16 6 10.2940 -5.2989 0.2695 17 7 11.0406 -4.4806 -0.4414 18 14 10.8515 -7.0581 0.5592 19 1 10.3327 -7.9271 -0.5275 20 1 10.3294 -7.5341 1.8654 21 1 12.3355 -7.1117 0.5700 22 6 7.2288 -3.1506 0.7273 23 6 2.5225 -2.3735 0.6191 24 6 2.5356 -2.9344 1.9023 25 6 1.8440 -4.1013 2.1470 26 6 1.1473 -4.7248 1.1260 27 6 1.1332 -4.1800 -0.1467 28 6 1.8145 -3.0107 -0.4077 29 1 5.0460 -1.2821 1.4950 30 1 5.1200 -0.1172 0.1511 31 1 6.6419 -3.5588 -2.0341 32 1 7.4498 -2.0023 -2.4201 33 1 9.4122 -2.5692 -1.1452 34 1 8.9751 -4.1593 -1.8420 35 1 10.7933 -3.5462 -0.5235 36 1 6.4329 -3.8557 0.9671 37 1 7.5276 -2.6097 1.6251 38 1 3.0822 -2.4516 2.6988 39 1 1.8494 -4.5329 3.1370 40 1 0.6111 -5.6413 1.3235 41 1 0.5868 -4.6727 -0.9373 42 1 1.8029 -2.5872 -1.4011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224299852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:36 Heat of formation + Delta-G solvation = 89.638699 kcal Electronic energy + Delta-G solvation = -25871.628566 eV Core-core repulsion = 22204.596918 eV Total energy + Delta-G solvation = -3667.031648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.05446 -38.70378 -37.98220 -36.66051 -36.36918 -34.67136 -32.38024 -31.26198 -30.66298 -29.35628 -28.20842 -26.93824 -24.35169 -24.06304 -22.76835 -21.08287 -20.65402 -20.57271 -20.18675 -17.65311 -17.56669 -16.95297 -16.44252 -15.54469 -15.29311 -15.10754 -14.63345 -14.49066 -14.32180 -14.15101 -13.87008 -13.72479 -13.67466 -13.39938 -13.36031 -13.13964 -13.03887 -12.85766 -12.84523 -12.34828 -12.13397 -11.83574 -11.53436 -11.45500 -11.25428 -10.83788 -10.68211 -10.48650 -10.15964 -10.05274 -9.97283 -9.63334 -9.40819 -9.22150 -8.97501 -8.43629 -7.01495 -6.14607 -3.13684 -0.12705 0.98671 1.15023 1.92574 2.32501 2.33937 3.00742 3.16556 3.36028 3.50551 3.52019 3.53509 3.69327 3.87869 4.16501 4.56515 4.62298 4.64665 4.74896 4.82300 4.85854 5.02463 5.10834 5.12325 5.16930 5.24954 5.33299 5.39183 5.44622 5.59706 5.61911 5.73635 5.97539 6.08642 6.13888 6.16318 6.23463 6.30119 6.37676 6.51358 6.63886 6.90862 6.91230 6.97019 7.06881 7.25164 7.72895 8.44092 8.97488 9.78181 10.30758 11.19698 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003265 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.061341 B = 8572.508499 C =10033.581301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.261 3.739 3 C 0.004 3.996 4 C 0.257 3.743 5 N -0.386 5.386 6 C 0.107 3.893 7 C 0.080 3.920 8 O -0.359 6.359 9 C 0.075 3.925 10 H 0.069 0.931 11 C -0.128 4.128 12 C 0.144 3.856 13 N -0.601 5.601 14 C -0.338 4.338 15 H 0.069 0.931 16 C -0.025 4.025 17 N -0.918 5.918 18 Si 1.065 2.935 19 H -0.293 1.293 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.118 3.882 23 C -0.085 4.085 24 C -0.084 4.084 25 C -0.119 4.119 26 C -0.101 4.101 27 C -0.119 4.119 28 C -0.080 4.080 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.269 0.731 36 H 0.038 0.962 37 H 0.022 0.978 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.327 4.668 2.443 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.064 5.064 2 C -0.055 4.055 3 C -0.003 4.003 4 C -0.059 4.059 5 N -0.061 5.061 6 C 0.097 3.903 7 C 0.003 3.997 8 O -0.278 6.278 9 C 0.018 3.982 10 H 0.087 0.913 11 C -0.166 4.166 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.465 4.465 15 H 0.086 0.914 16 C -0.226 4.226 17 N -0.560 5.560 18 Si 0.895 3.105 19 H -0.220 1.220 20 H -0.219 1.219 21 H -0.217 1.217 22 C -0.008 4.008 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.137 4.137 26 C -0.119 4.119 27 C -0.137 4.137 28 C -0.098 4.098 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.107 4.839 1.568 19.772 hybrid contribution -0.750 0.965 0.749 1.433 sum -19.857 5.804 2.316 20.817 Atomic orbital electron populations 1.81277 1.11166 1.06103 1.07824 1.24739 0.91499 0.94741 0.94564 1.13293 0.84218 0.89982 1.12818 1.24788 0.94178 0.92505 0.94452 1.81318 1.07305 1.09401 1.08120 1.21407 0.95035 0.90275 0.83545 1.21632 0.87155 0.93535 0.97372 1.88008 1.21249 1.54293 1.64236 1.23321 0.78303 0.98566 0.98057 0.91283 1.22973 0.98510 1.00205 0.94927 1.21617 0.92071 0.96928 0.87530 1.44465 1.33423 1.42696 1.12403 1.19789 1.03923 1.12547 1.10273 0.91356 1.25698 0.91941 1.05644 0.99307 1.70772 1.35967 1.05696 1.43517 0.83513 0.75794 0.75581 0.75607 1.22023 1.21887 1.21660 1.21717 0.91642 0.93361 0.94069 1.18581 1.00049 0.94715 0.95198 1.21257 0.98103 0.95565 0.95269 1.21090 0.97528 0.95361 0.99693 1.21380 0.98091 0.99446 0.93011 1.21076 0.99554 0.95836 0.97215 1.21273 0.94901 0.95430 0.98170 0.89272 0.91291 0.90446 0.91320 0.95550 0.92167 0.91948 0.94434 0.96038 0.85219 0.85332 0.85692 0.85445 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.51 18.54 41.84 0.78 -3.74 16 2 C 0.26 2.57 13.73 -22.48 -0.31 2.27 16 3 C 0.00 0.03 5.72 -106.66 -0.61 -0.58 16 4 C 0.26 2.58 13.44 -22.49 -0.30 2.27 16 5 N -0.39 -4.67 18.53 41.81 0.77 -3.89 16 6 C 0.11 0.96 5.21 -101.80 -0.53 0.43 16 7 C 0.08 0.81 5.89 36.00 0.21 1.02 16 8 O -0.36 -4.94 9.91 -35.23 -0.35 -5.29 16 9 C 0.08 1.21 3.39 -24.89 -0.08 1.12 16 10 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 11 C -0.13 -2.23 6.82 -24.46 -0.17 -2.40 16 12 C 0.14 3.25 5.22 -2.41 -0.01 3.24 16 13 N -0.60 -14.94 3.34 -169.93 -0.57 -15.51 16 14 C -0.34 -9.41 10.03 -15.06 -0.15 -9.56 16 15 H 0.07 1.90 7.98 -52.49 -0.42 1.48 16 16 C -0.02 -0.69 5.06 -17.43 -0.09 -0.78 16 17 N -0.92 -27.30 12.77 55.49 0.71 -26.59 16 18 Si 1.07 25.07 30.01 -169.99 -5.10 19.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.12 2.36 7.02 -3.06 -0.02 2.34 16 23 C -0.09 -0.81 4.42 -105.09 -0.46 -1.28 16 24 C -0.08 -0.74 9.79 -39.05 -0.38 -1.13 16 25 C -0.12 -1.00 10.03 -39.65 -0.40 -1.40 16 26 C -0.10 -0.85 10.04 -39.43 -0.40 -1.24 16 27 C -0.12 -1.04 10.03 -39.66 -0.40 -1.44 16 28 C -0.08 -0.76 9.04 -39.05 -0.35 -1.11 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.63 6.93 -51.93 -0.36 0.27 16 34 H 0.06 1.50 7.63 -51.93 -0.40 1.11 16 35 H 0.27 7.95 5.93 -40.82 -0.24 7.71 16 36 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -32.72 372.91 -7.77 -40.49 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.18 Total: -2.83 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.46 Total: -8.23 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 1.69 Total: -49.73 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.35 Total: -5.29 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.72 -7.77 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224299852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.128 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds