Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43203 * 119.99687 * 162.75774 * 3 2 1 5 5 N 3.51041 * 140.69336 * 162.75494 * 2 1 3 6 6 C 1.36543 * 120.00596 * 342.75838 * 3 2 1 7 7 C 1.50698 * 120.00337 * 185.07559 * 6 3 2 8 8 O 1.42900 * 109.47341 * 235.53867 * 7 6 3 9 9 C 1.42902 * 114.00160 * 179.97438 * 8 7 6 10 10 H 1.08997 * 110.78215 * 328.22212 * 9 8 7 11 11 C 1.55157 * 110.71885 * 204.97904 * 9 8 7 12 12 C 1.55137 * 101.48019 * 205.97023 * 11 9 8 13 13 N 1.47420 * 104.72134 * 37.30244 * 12 11 9 14 14 C 1.36946 * 125.64727 * 155.81866 * 13 12 11 15 15 H 1.08000 * 119.99562 * 190.60765 * 14 13 12 16 16 C 1.38809 * 119.99631 * 10.60312 * 14 13 12 17 17 N 1.31619 * 120.00409 * 29.38694 * 16 14 13 18 18 Si 1.86804 * 119.99605 * 209.38492 * 16 14 13 19 19 H 1.48498 * 109.47333 * 90.00126 * 18 16 14 20 20 H 1.48503 * 109.46872 * 330.00176 * 18 16 14 21 21 H 1.48500 * 109.47048 * 210.00330 * 18 16 14 22 22 C 1.47019 * 108.70595 * 335.54305 * 13 12 11 23 23 C 1.46756 * 119.99803 * 5.07649 * 6 3 2 24 24 C 1.40055 * 120.18861 * 244.72737 * 23 6 3 25 25 C 1.37831 * 119.80438 * 179.74438 * 24 23 6 26 26 C 1.38448 * 120.18924 * 0.55577 * 25 24 23 27 27 C 1.38446 * 120.38577 * 359.68994 * 26 25 24 28 28 C 1.37825 * 120.19437 * 0.02945 * 27 26 25 29 29 H 1.09003 * 109.47352 * 115.54314 * 7 6 3 30 30 H 1.09000 * 109.47044 * 355.54128 * 7 6 3 31 31 H 1.08993 * 111.00662 * 324.20761 * 11 9 8 32 32 H 1.08994 * 111.00358 * 88.06768 * 11 9 8 33 33 H 1.08994 * 110.49941 * 278.45119 * 12 11 9 34 34 H 1.09004 * 110.33707 * 156.06260 * 12 11 9 35 35 H 0.97003 * 119.99912 * 5.66029 * 17 16 14 36 36 H 1.09003 * 109.88285 * 120.70562 * 22 13 12 37 37 H 1.08995 * 109.88630 * 241.72264 * 22 13 12 38 38 H 1.08003 * 120.09399 * 0.02562 * 24 23 6 39 39 H 1.07997 * 119.90512 * 180.26873 * 25 24 23 40 40 H 1.07995 * 119.80672 * 179.72471 * 26 25 24 41 41 H 1.07995 * 119.90147 * 180.02562 * 27 26 25 42 42 H 1.07995 * 120.10380 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2834 1.1854 -0.3676 5 7 3.8522 2.1238 -0.6592 6 6 3.2513 -1.1283 0.3505 7 6 4.7538 -1.0958 0.4615 8 8 5.3157 -2.1039 -0.3812 9 6 6.7433 -2.1581 -0.3502 10 1 7.1643 -1.1673 -0.1795 11 6 7.2980 -2.7716 -1.6630 12 6 8.6546 -3.3518 -1.1836 13 7 8.3831 -3.8702 0.1695 14 6 9.0925 -4.8547 0.8042 15 1 8.7170 -5.2855 1.7206 16 6 10.2940 -5.2989 0.2695 17 7 11.0406 -4.4806 -0.4414 18 14 10.8515 -7.0581 0.5592 19 1 10.3327 -7.9271 -0.5275 20 1 10.3294 -7.5341 1.8654 21 1 12.3355 -7.1117 0.5700 22 6 7.2288 -3.1506 0.7273 23 6 2.5225 -2.3735 0.6191 24 6 2.5356 -2.9344 1.9023 25 6 1.8440 -4.1013 2.1470 26 6 1.1473 -4.7248 1.1260 27 6 1.1332 -4.1800 -0.1467 28 6 1.8145 -3.0107 -0.4077 29 1 5.0460 -1.2821 1.4950 30 1 5.1200 -0.1172 0.1511 31 1 6.6419 -3.5588 -2.0341 32 1 7.4498 -2.0023 -2.4201 33 1 9.4122 -2.5692 -1.1452 34 1 8.9751 -4.1593 -1.8420 35 1 10.7933 -3.5462 -0.5235 36 1 6.4329 -3.8557 0.9671 37 1 7.5276 -2.6097 1.6251 38 1 3.0822 -2.4516 2.6988 39 1 1.8494 -4.5329 3.1370 40 1 0.6111 -5.6413 1.3235 41 1 0.5868 -4.6727 -0.9373 42 1 1.8029 -2.5872 -1.4011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224299852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = 72.268016 kcal Electronic energy + Delta-G solvation = -25872.381815 eV Core-core repulsion = 22204.596918 eV Total energy + Delta-G solvation = -3667.784898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.83790 -39.90064 -38.84538 -37.80856 -37.45744 -35.61288 -34.22996 -31.89531 -31.35177 -31.09007 -29.42722 -28.27741 -26.17979 -24.86918 -23.41117 -22.22292 -21.97544 -21.67140 -21.40370 -19.62608 -18.28856 -18.10636 -17.24091 -16.57899 -16.28490 -16.04084 -15.91399 -15.57424 -15.44713 -15.27648 -15.13011 -15.04602 -14.74329 -14.37853 -14.34153 -14.24204 -13.96772 -13.87087 -13.72139 -13.63789 -13.35282 -13.04464 -12.63327 -12.57558 -12.43903 -12.37260 -12.10483 -12.05291 -11.86886 -11.60069 -11.59517 -10.89928 -10.56350 -10.44983 -9.86935 -9.65520 -9.03140 -8.33463 -5.28239 -0.87713 0.31264 0.50330 1.11258 1.51688 1.52761 1.60078 1.67313 1.84916 2.13934 2.37840 2.52565 2.66864 2.80639 2.98955 3.18556 3.38194 3.56589 3.71118 3.85182 3.97901 4.00349 4.07770 4.09245 4.17265 4.24594 4.33417 4.43422 4.48013 4.57335 4.63465 4.69552 4.88211 4.93050 4.95307 4.98506 5.08134 5.12534 5.28579 5.42729 5.51040 5.60442 5.66343 6.01712 6.07968 6.11344 6.27811 6.32447 6.90464 7.71581 8.27987 9.01331 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003265 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.061341 B = 8572.508499 C =10033.581301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.279 3.721 3 C 0.015 3.985 4 C 0.278 3.722 5 N -0.419 5.419 6 C 0.125 3.875 7 C 0.072 3.928 8 O -0.363 6.363 9 C 0.095 3.905 10 H 0.090 0.910 11 C -0.115 4.115 12 C 0.146 3.854 13 N -0.626 5.626 14 C -0.347 4.347 15 H 0.063 0.937 16 C -0.077 4.077 17 N -0.947 5.947 18 Si 1.115 2.885 19 H -0.286 1.286 20 H -0.271 1.271 21 H -0.294 1.294 22 C 0.114 3.886 23 C -0.101 4.101 24 C -0.094 4.094 25 C -0.129 4.129 26 C -0.108 4.108 27 C -0.131 4.131 28 C -0.095 4.095 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.013 0.987 34 H 0.025 0.975 35 H 0.258 0.742 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 4.529 3.046 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.037 4.037 3 C 0.008 3.992 4 C -0.038 4.038 5 N -0.094 5.094 6 C 0.115 3.885 7 C -0.004 4.004 8 O -0.282 6.282 9 C 0.037 3.963 10 H 0.108 0.892 11 C -0.153 4.153 12 C 0.020 3.980 13 N -0.355 5.355 14 C -0.475 4.475 15 H 0.081 0.919 16 C -0.273 4.273 17 N -0.590 5.590 18 Si 0.939 3.061 19 H -0.213 1.213 20 H -0.196 1.196 21 H -0.221 1.221 22 C -0.011 4.011 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.147 4.147 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.113 4.113 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.477 4.720 2.182 21.127 hybrid contribution -0.433 0.994 0.623 1.250 sum -20.910 5.714 2.805 21.857 Atomic orbital electron populations 1.81299 1.12038 1.07061 1.08908 1.24726 0.91452 0.93831 0.93677 1.13025 0.83481 0.89559 1.13119 1.24765 0.93414 0.92103 0.93485 1.81353 1.08405 1.10310 1.09369 1.21219 0.94373 0.90083 0.82785 1.21877 0.87475 0.93071 0.97937 1.87985 1.19527 1.55642 1.65028 1.22979 0.79752 0.98210 0.95368 0.89225 1.22828 0.95301 1.00839 0.96321 1.21520 0.94694 0.95418 0.86331 1.44742 1.34130 1.43074 1.13539 1.20043 1.03942 1.13301 1.10198 0.91885 1.27029 0.92505 1.08521 0.99249 1.70877 1.37065 1.05466 1.45613 0.82855 0.75132 0.71425 0.76650 1.21253 1.19612 1.22085 1.21883 0.89882 0.93889 0.95436 1.18706 1.00717 0.95062 0.95677 1.21557 0.98250 0.95838 0.95507 1.21415 0.97261 0.95347 1.00655 1.21708 0.97934 1.00095 0.92871 1.21355 0.99640 0.95844 0.98012 1.21472 0.95313 0.95975 0.98541 0.87414 0.90209 0.90614 0.88306 0.96970 0.95668 0.93174 0.94715 0.95683 0.83563 0.83582 0.83832 0.84020 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.24 18.54 19.00 0.35 -8.89 16 2 C 0.28 5.08 13.73 88.33 1.21 6.29 16 3 C 0.02 0.24 5.72 -21.18 -0.12 0.11 16 4 C 0.28 5.02 13.44 88.34 1.19 6.21 16 5 N -0.42 -9.44 18.53 19.00 0.35 -9.09 16 6 C 0.12 1.93 5.21 -18.03 -0.09 1.84 16 7 C 0.07 1.24 5.89 71.24 0.42 1.66 16 8 O -0.36 -8.96 9.91 -148.98 -1.48 -10.44 16 9 C 0.09 2.83 3.39 31.78 0.11 2.93 16 10 H 0.09 2.35 7.89 -2.39 -0.02 2.33 16 11 C -0.11 -3.81 6.82 32.07 0.22 -3.59 16 12 C 0.15 6.65 5.22 86.94 0.45 7.10 16 13 N -0.63 -31.23 3.34 -691.54 -2.31 -33.55 16 14 C -0.35 -19.46 10.03 84.03 0.84 -18.62 16 15 H 0.06 3.51 7.98 -2.91 -0.02 3.49 16 16 C -0.08 -4.40 5.06 84.86 0.43 -3.97 16 17 N -0.95 -57.57 12.77 21.65 0.28 -57.30 16 18 Si 1.11 50.78 30.01 68.60 2.06 52.84 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 C 0.11 4.41 7.02 86.73 0.61 5.02 16 23 C -0.10 -1.73 4.42 -20.17 -0.09 -1.82 16 24 C -0.09 -1.46 9.79 22.61 0.22 -1.24 16 25 C -0.13 -1.92 10.03 22.22 0.22 -1.70 16 26 C -0.11 -1.61 10.04 22.37 0.22 -1.38 16 27 C -0.13 -2.09 10.03 22.22 0.22 -1.87 16 28 C -0.09 -1.66 9.04 22.61 0.20 -1.46 16 29 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.26 6.36 -2.39 -0.02 1.24 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.01 0.60 6.93 -2.39 -0.02 0.58 16 34 H 0.02 1.29 7.63 -2.38 -0.02 1.27 16 35 H 0.26 15.73 5.93 -92.71 -0.55 15.18 16 36 H 0.03 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.43 372.91 6.79 -64.64 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.26 Total: 6.25 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.27 Total: -4.48 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -1.33 Total: -108.81 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.48 Total: -10.44 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -71.43 6.79 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224299852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.909 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds