Wall clock time and date at job start Tue Mar 31 2020 13:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43207 * 119.99903 * 329.28562 * 3 2 1 5 5 N 3.51035 * 140.68576 * 329.28859 * 2 1 3 6 6 C 1.36547 * 120.00054 * 149.29059 * 3 2 1 7 7 C 1.50695 * 120.00006 * 5.63488 * 6 3 2 8 8 O 1.42899 * 109.47220 * 236.00276 * 7 6 3 9 9 C 1.42895 * 114.00273 * 179.97438 * 8 7 6 10 10 C 1.53941 * 113.73736 * 248.77110 * 9 8 7 11 11 N 1.48186 * 86.10263 * 221.95650 * 10 9 8 12 12 C 1.46897 * 111.07384 * 137.51792 * 11 10 9 13 13 C 1.50699 * 109.46999 * 70.56510 * 12 11 10 14 14 H 1.07997 * 119.99768 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99859 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00036 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46994 * 89.99923 * 17 15 13 19 19 H 1.48494 * 109.47279 * 210.00516 * 17 15 13 20 20 H 1.48501 * 109.47089 * 330.00567 * 17 15 13 21 21 C 1.47963 * 90.79731 * 24.59852 * 11 10 9 22 22 C 1.46755 * 119.99782 * 185.63800 * 6 3 2 23 23 C 1.40054 * 120.19066 * 64.99901 * 22 6 3 24 24 C 1.37826 * 119.80312 * 180.22809 * 23 22 6 25 25 C 1.38446 * 120.19336 * 359.49615 * 24 23 22 26 26 C 1.38446 * 120.38204 * 0.50412 * 25 24 23 27 27 C 1.37829 * 120.19576 * 359.75461 * 26 25 24 28 28 H 1.09001 * 109.47104 * 356.00151 * 7 6 3 29 29 H 1.08996 * 109.47118 * 116.00424 * 7 6 3 30 30 H 1.08999 * 112.93649 * 20.33207 * 9 8 7 31 31 H 1.08996 * 113.75493 * 336.23695 * 10 9 8 32 32 H 1.08996 * 113.76070 * 107.59966 * 10 9 8 33 33 H 1.08993 * 109.47320 * 190.56786 * 12 11 10 34 34 H 1.08997 * 109.47121 * 310.56679 * 12 11 10 35 35 H 0.97006 * 119.99252 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.75559 * 221.08457 * 21 11 10 37 37 H 1.08997 * 113.76059 * 89.72324 * 21 11 10 38 38 H 1.08003 * 120.09767 * 359.95332 * 23 22 6 39 39 H 1.08002 * 119.90245 * 179.71941 * 24 23 22 40 40 H 1.07998 * 119.81061 * 180.23164 * 25 24 23 41 41 H 1.08002 * 119.89830 * 179.76849 * 26 25 24 42 42 H 1.08001 * 120.09830 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.0653 0.6335 5 7 3.8519 -1.9121 1.1359 6 6 3.2503 1.0176 -0.6039 7 6 2.5018 2.2021 -1.1586 8 8 2.8211 2.3620 -2.5422 9 6 2.1597 3.4633 -3.1680 10 6 1.1002 3.0431 -4.2028 11 7 1.6348 4.1388 -5.0451 12 6 1.7580 3.7157 -6.4464 13 6 0.3847 3.5696 -7.0496 14 1 -0.4918 3.7713 -6.4519 15 6 0.2475 3.1794 -8.3649 16 7 1.3149 2.9343 -9.0929 17 14 -1.4548 2.9976 -9.1124 18 1 -1.8729 4.2904 -9.7117 19 1 -1.4239 1.9509 -10.1652 20 1 -2.4209 2.6072 -8.0544 21 6 2.9397 4.0631 -4.3517 22 6 4.7125 0.9571 -0.7128 23 6 5.3203 -0.0354 -1.4919 24 6 6.6944 -0.0877 -1.5848 25 6 7.4732 0.8435 -0.9191 26 6 6.8807 1.8280 -0.1468 27 6 5.5082 1.8918 -0.0385 28 1 1.4297 2.0378 -1.0498 29 1 2.7888 3.1011 -0.6133 30 1 1.8050 4.2069 -2.4543 31 1 1.2634 2.0492 -4.6194 32 1 0.0744 3.2032 -3.8709 33 1 2.3219 4.4637 -7.0036 34 1 2.2788 2.7593 -6.4928 35 1 1.2183 2.6601 -10.0184 36 1 3.3809 5.0369 -4.1387 37 1 3.6420 3.3682 -4.8121 38 1 4.7141 -0.7604 -2.0148 39 1 7.1649 -0.8552 -2.1815 40 1 8.5493 0.7990 -0.9992 41 1 7.4959 2.5481 0.3722 42 1 5.0477 2.6602 0.5647 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224301423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:27 Heat of formation + Delta-G solvation = 80.496770 kcal Electronic energy + Delta-G solvation = -25422.185342 eV Core-core repulsion = 21754.757270 eV Total energy + Delta-G solvation = -3667.428072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02467 -40.45732 -38.87341 -37.89407 -37.43303 -35.50835 -34.88699 -31.87386 -31.32782 -31.07618 -28.78324 -27.21632 -26.56057 -24.83708 -23.46620 -23.33213 -21.78740 -21.41121 -20.81220 -18.67047 -18.29022 -17.92924 -17.23137 -16.89337 -16.43301 -16.18830 -15.96611 -15.78019 -15.39882 -15.19377 -15.06028 -14.97188 -14.62059 -14.32677 -14.23803 -14.18056 -13.92603 -13.84988 -13.66544 -13.62194 -13.54935 -13.26230 -12.92439 -12.69728 -12.63267 -12.31096 -12.18311 -12.06397 -12.03345 -11.47608 -11.17273 -10.75221 -10.65177 -10.43534 -9.84877 -9.65510 -9.58636 -8.24419 -6.34776 -0.84798 0.33553 0.52362 1.12268 1.39413 1.40665 1.51727 1.53227 1.54172 2.17667 2.38070 2.41952 2.57958 2.83291 3.01260 3.09021 3.33068 3.42039 3.54503 3.96341 4.01956 4.08066 4.11031 4.21775 4.29311 4.37120 4.41617 4.52335 4.62633 4.64012 4.72463 4.75814 4.81741 4.94906 4.99692 5.00864 5.14920 5.15115 5.45477 5.52119 5.53539 5.62779 5.77250 6.04318 6.10260 6.13171 6.16469 6.29372 6.38890 6.80257 7.35117 8.87333 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.002928 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.219003 B = 9559.850591 C =10546.292976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.277 3.723 3 C 0.009 3.991 4 C 0.279 3.721 5 N -0.420 5.420 6 C 0.124 3.876 7 C 0.072 3.928 8 O -0.373 6.373 9 C 0.086 3.914 10 C -0.006 4.006 11 N -0.490 5.490 12 C 0.180 3.820 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.265 1.265 21 C 0.000 4.000 22 C -0.101 4.101 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.087 4.087 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.004 0.996 34 H -0.028 1.028 35 H 0.265 0.735 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.646 -1.046 22.562 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.039 4.039 3 C 0.002 3.998 4 C -0.037 4.037 5 N -0.096 5.096 6 C 0.115 3.885 7 C -0.004 4.004 8 O -0.292 6.292 9 C 0.028 3.972 10 C -0.135 4.135 11 N -0.214 5.214 12 C 0.053 3.947 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.105 4.105 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.023 0.977 34 H -0.010 1.010 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.171 0.829 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.576 -1.949 23.031 25.418 hybrid contribution -0.292 -0.874 -1.373 1.654 sum 10.284 -2.823 21.657 24.141 Atomic orbital electron populations 1.81388 1.12242 1.07200 1.08854 1.24855 0.91538 0.94011 0.93521 1.13108 0.83024 0.94082 1.09578 1.24808 0.93368 0.92436 0.93101 1.81314 1.08440 1.09858 1.09974 1.21350 0.93159 0.90075 0.83933 1.21961 0.98121 0.96353 0.83916 1.88050 1.68664 1.50522 1.21922 1.24163 0.91698 0.88282 0.93016 1.24297 1.00292 0.94437 0.94502 1.68454 1.12975 1.36933 1.03062 1.19815 0.96259 0.92331 0.86320 1.21415 0.93075 1.45469 0.96780 0.92156 1.25913 1.01192 0.94834 0.97622 1.70080 1.30779 1.47476 1.08912 0.85400 0.79166 0.78110 0.78082 1.19620 1.20658 1.18982 1.24226 0.93353 1.01496 0.93785 1.18706 0.90132 0.99066 1.02189 1.21441 0.95764 0.96996 0.97671 1.21320 0.93357 1.00177 1.00338 1.21707 1.01288 0.94146 0.95425 1.21452 0.94823 0.98998 0.98994 1.21599 0.93973 0.96938 0.97961 0.90912 0.85323 0.85008 0.93309 0.89606 0.97744 1.01030 0.92588 0.87171 0.92619 0.86132 0.84711 0.83848 0.82909 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -10.30 18.54 19.00 0.35 -9.95 16 2 C 0.28 5.39 13.44 88.33 1.19 6.58 16 3 C 0.01 0.15 5.72 -21.18 -0.12 0.03 16 4 C 0.28 5.30 13.75 88.33 1.21 6.51 16 5 N -0.42 -9.66 18.54 19.01 0.35 -9.31 16 6 C 0.12 1.80 5.20 -18.03 -0.09 1.70 16 7 C 0.07 1.04 5.86 71.23 0.42 1.45 16 8 O -0.37 -8.58 10.21 -148.98 -1.52 -10.10 16 9 C 0.09 2.22 4.48 31.24 0.14 2.36 16 10 C -0.01 -0.22 7.32 86.37 0.63 0.41 16 11 N -0.49 -20.61 6.25 -915.63 -5.72 -26.33 16 12 C 0.18 9.64 4.58 85.56 0.39 10.04 16 13 C -0.53 -30.36 8.84 25.60 0.23 -30.13 16 14 H 0.06 3.40 7.80 -2.91 -0.02 3.37 16 15 C 0.00 0.16 5.46 84.66 0.46 0.62 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.00 0.01 7.81 86.41 0.67 0.68 16 22 C -0.10 -1.55 4.42 -20.17 -0.09 -1.64 16 23 C -0.10 -1.80 9.06 22.61 0.20 -1.60 16 24 C -0.13 -2.12 10.03 22.22 0.22 -1.90 16 25 C -0.11 -1.37 10.04 22.37 0.22 -1.15 16 26 C -0.12 -1.36 10.03 22.22 0.22 -1.13 16 27 C -0.09 -0.99 9.79 22.61 0.22 -0.77 16 28 H 0.07 1.08 6.39 -2.39 -0.02 1.06 16 29 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.13 2.45 7.89 -2.39 -0.02 2.43 16 31 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 34 H -0.03 -1.63 7.70 -2.39 -0.02 -1.64 16 35 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 36 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 37 H 0.06 1.99 7.79 -2.39 -0.02 1.97 16 38 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 42 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -73.24 380.04 2.95 -70.29 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.04 Total: 2.86 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 6.14 Total: -7.93 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -4.73 Total: -101.78 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.52 Total: -10.10 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -73.24 2.95 -70.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224301423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.786 kcal (2) G-P(sol) polarization free energy of solvation -73.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds