Wall clock time and date at job start Tue Mar 31 2020 14:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00031 * 2 1 4 4 H 1.48505 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47633 * 300.00332 * 3 2 1 6 6 H 1.48507 * 109.47120 * 60.00696 * 3 2 1 7 7 C 1.37876 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47247 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46997 * 179.97438 * 12 11 10 14 14 O 1.42908 * 109.46995 * 179.97438 * 13 12 11 15 15 C 1.42901 * 113.99844 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.25669 * 30.52382 * 15 14 13 17 17 C 1.52722 * 109.25312 * 150.00077 * 15 14 13 18 18 C 1.53324 * 108.42698 * 171.54735 * 17 15 14 19 19 C 1.52767 * 108.34897 * 290.12962 * 18 17 15 20 20 C 1.50496 * 110.55740 * 50.80814 * 19 18 17 21 21 C 1.39340 * 117.96668 * 162.88518 * 20 19 18 22 22 Cl 1.73598 * 120.57998 * 359.81680 * 21 20 19 23 23 C 1.38558 * 118.83473 * 180.10579 * 21 20 19 24 24 C 1.38184 * 118.82249 * 359.42523 * 23 21 20 25 25 N 1.31529 * 120.63005 * 0.39513 * 24 23 21 26 26 C 1.32729 * 122.43300 * 0.02562 * 25 24 23 27 27 H 0.97002 * 119.99727 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47397 * 59.99542 * 9 7 2 29 29 H 1.09000 * 109.46697 * 299.99882 * 9 7 2 30 30 H 1.09001 * 109.47685 * 59.99066 * 10 9 7 31 31 H 1.09007 * 109.46686 * 299.99408 * 10 9 7 32 32 H 1.08996 * 109.47483 * 59.99775 * 11 10 9 33 33 H 1.09000 * 109.46681 * 299.99701 * 11 10 9 34 34 H 1.08996 * 109.46870 * 59.99635 * 12 11 10 35 35 H 1.09000 * 109.46528 * 299.99864 * 12 11 10 36 36 H 1.08996 * 109.47416 * 60.00205 * 13 12 11 37 37 H 1.09000 * 109.47564 * 299.99466 * 13 12 11 38 38 H 1.09000 * 109.67530 * 51.81079 * 17 15 14 39 39 H 1.09000 * 109.67371 * 291.28242 * 17 15 14 40 40 H 1.09001 * 109.68952 * 170.42254 * 18 17 15 41 41 H 1.08998 * 109.69426 * 49.84628 * 18 17 15 42 42 H 1.08998 * 109.25938 * 290.53094 * 19 18 17 43 43 H 1.09003 * 109.23500 * 171.06971 * 19 18 17 44 44 H 1.08003 * 120.58744 * 179.71632 * 23 21 20 45 45 H 1.08005 * 119.68109 * 180.38100 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4744 -6.1501 -0.0024 13 6 1.7093 -7.4750 -0.0023 14 8 2.6379 -8.5612 -0.0033 15 6 2.0233 -9.8513 -0.0038 16 1 1.0683 -9.7943 -0.5261 17 6 2.9337 -10.8426 -0.7256 18 6 2.3641 -12.2529 -0.5327 19 6 2.5512 -12.6512 0.9303 20 6 2.0248 -11.5758 1.8422 21 6 1.7786 -11.9098 3.1724 22 17 2.0697 -13.5220 3.7466 23 6 1.2916 -10.9342 4.0272 24 6 1.0788 -9.6614 3.5331 25 7 1.3263 -9.3821 2.2718 26 6 1.7852 -10.2894 1.4186 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5574 0.8880 30 1 2.8713 -3.6048 0.8889 31 1 2.8724 -3.6040 -0.8911 32 1 0.8538 -5.0447 -0.8922 33 1 0.8532 -5.0449 0.8878 34 1 3.1010 -6.0926 0.8876 35 1 3.1010 -6.0919 -0.8924 36 1 1.0824 -7.5327 -0.8921 37 1 1.0830 -7.5329 0.8879 38 1 3.9380 -10.7917 -0.3052 39 1 2.9678 -10.6028 -1.7884 40 1 2.8958 -12.9548 -1.1751 41 1 1.3029 -12.2578 -0.7817 42 1 3.6121 -12.8032 1.1286 43 1 2.0132 -13.5797 1.1213 44 1 1.0866 -11.1632 5.0626 45 1 0.7054 -8.8886 4.1887 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:15 Heat of formation + Delta-G solvation = -72.012589 kcal Electronic energy + Delta-G solvation = -24090.807843 eV Core-core repulsion = 20517.873962 eV Total energy + Delta-G solvation = -3572.933880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88701 -39.19116 -37.79678 -37.39806 -36.61187 -34.82268 -33.48490 -32.06067 -31.64887 -30.04438 -28.00823 -25.40026 -25.02427 -24.40681 -23.41256 -22.38416 -21.72310 -20.87168 -18.50064 -18.33963 -17.99460 -17.62554 -16.81646 -16.52586 -16.49992 -15.82518 -15.73603 -15.40682 -14.86963 -14.75122 -14.57580 -14.41047 -14.15976 -13.84615 -13.79250 -13.36190 -13.24065 -13.21954 -12.93105 -12.80628 -12.47085 -12.42661 -12.25236 -12.12201 -11.92285 -11.84547 -11.72038 -11.62510 -11.33767 -11.29642 -11.01815 -10.86583 -10.55460 -10.42828 -10.19102 -9.92491 -8.19758 -6.30931 -0.10546 -0.04298 0.84060 1.39491 1.40030 1.53772 2.40400 2.43487 2.81240 3.10363 3.12724 3.47099 3.58940 3.72618 3.98758 4.02027 4.06403 4.12314 4.19977 4.27414 4.31134 4.37362 4.42111 4.45955 4.62006 4.66592 4.72209 4.75330 4.80461 4.86258 4.94929 4.98546 5.08804 5.11399 5.13498 5.17587 5.31493 5.32175 5.34459 5.40705 5.50048 5.56353 5.79164 5.87579 6.25233 6.27650 6.86451 6.88207 7.38106 8.92315 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.001932 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.518035 B =14486.278465 C =15267.217727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.104 4.104 12 C -0.104 4.104 13 C 0.067 3.933 14 O -0.384 6.384 15 C 0.139 3.861 16 H 0.082 0.918 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.115 4.115 21 C -0.009 4.009 22 Cl -0.040 7.040 23 C -0.159 4.159 24 C 0.102 3.898 25 N -0.498 5.498 26 C 0.103 3.897 27 H 0.264 0.736 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.170 0.830 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -33.735 4.117 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.141 4.141 13 C -0.009 4.009 14 O -0.303 6.303 15 C 0.080 3.920 16 H 0.100 0.900 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.044 4.044 22 Cl -0.011 7.011 23 C -0.180 4.180 24 C -0.057 4.057 25 N -0.208 5.208 26 C -0.033 4.033 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.187 0.813 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.839 -32.906 3.857 33.353 hybrid contribution -0.136 0.324 0.776 0.852 sum 3.703 -32.582 4.633 33.117 Atomic orbital electron populations 1.70112 1.07791 1.27691 1.51842 1.26032 0.95853 1.03487 0.94781 0.85369 0.79015 0.78617 0.77862 1.18655 1.20218 1.20252 1.21773 0.93543 0.92565 1.50299 0.92324 1.19045 0.94528 0.93246 0.94734 1.21441 0.98004 0.93777 1.00388 1.21405 0.97822 0.93375 1.01575 1.21383 0.98250 0.92053 1.02429 1.22628 0.91795 0.85582 1.00927 1.87893 1.34108 1.13589 1.94713 1.21007 0.98053 0.84268 0.88691 0.89990 1.21669 0.98825 0.93325 1.01236 1.21568 1.02477 0.95426 0.95298 1.20616 1.02146 0.95405 0.93710 1.20601 1.00784 0.96400 0.94042 1.21488 1.00784 0.88178 0.93979 1.98386 1.94231 1.20116 1.88323 1.22381 1.00230 0.93066 1.02293 1.23172 0.95113 0.95895 0.91496 1.67527 1.11523 1.36757 1.05001 1.21956 0.95154 0.88860 0.97311 0.92765 0.98974 0.99153 0.93412 0.93081 0.92250 0.92669 0.92289 0.91455 0.93026 0.91878 0.91029 0.88873 0.87691 0.90804 0.89058 0.88815 0.81290 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.54 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -4.28 5.15 30.59 0.16 -4.13 16 11 C -0.10 -3.71 5.21 30.60 0.16 -3.55 16 12 C -0.10 -3.16 5.58 30.59 0.17 -2.99 16 13 C 0.07 1.84 5.56 71.98 0.40 2.24 16 14 O -0.38 -10.31 9.84 -148.98 -1.47 -11.78 16 15 C 0.14 2.86 2.79 29.77 0.08 2.94 16 16 H 0.08 1.58 7.78 -2.39 -0.02 1.56 16 17 C -0.11 -1.62 5.61 30.61 0.17 -1.44 16 18 C -0.11 -1.05 5.98 30.63 0.18 -0.86 16 19 C -0.08 -0.94 5.04 29.71 0.15 -0.79 16 20 C -0.12 -2.02 5.74 -19.83 -0.11 -2.14 16 21 C -0.01 -0.15 6.36 22.61 0.14 -0.01 16 22 Cl -0.04 -0.52 27.46 -2.72 -0.07 -0.59 16 23 C -0.16 -2.46 9.94 22.33 0.22 -2.23 16 24 C 0.10 1.93 11.19 84.73 0.95 2.88 16 25 N -0.50 -12.15 8.20 -184.06 -1.51 -13.66 16 26 C 0.10 2.25 6.38 42.27 0.27 2.52 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.30 8.08 -2.39 -0.02 1.28 16 37 H 0.06 1.83 6.58 -2.39 -0.02 1.81 16 38 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.89 7.34 -2.39 -0.02 0.88 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -70.63 377.43 4.01 -66.62 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.96 Total: 8.01 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.79 Total: -38.02 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.23 Total: -71.71 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.47 Total: -11.78 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.07 Total: -0.59 kcal Total: -70.63 4.01 -66.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.389 kcal (2) G-P(sol) polarization free energy of solvation -70.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds