Wall clock time and date at job start Tue Mar 31 2020 14:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00293 * 2 1 4 4 H 1.48500 * 109.46820 * 269.99748 * 3 2 1 5 5 H 1.48498 * 109.47102 * 29.99275 * 3 2 1 6 6 H 1.48492 * 109.47218 * 149.99904 * 3 2 1 7 7 C 1.37880 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47445 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47551 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47551 * 180.02562 * 12 11 10 14 14 O 1.42893 * 109.47276 * 180.02562 * 13 12 11 15 15 C 1.42903 * 114.00112 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.25306 * 329.47991 * 15 14 13 17 17 C 1.52719 * 109.25850 * 210.00239 * 15 14 13 18 18 C 1.53322 * 108.44374 * 188.41728 * 17 15 14 19 19 C 1.52771 * 108.36690 * 69.78905 * 18 17 15 20 20 C 1.50490 * 110.56599 * 309.16437 * 19 18 17 21 21 C 1.39333 * 117.97618 * 197.50825 * 20 19 18 22 22 Cl 1.73604 * 120.58123 * 0.35768 * 21 20 19 23 23 C 1.38562 * 118.83957 * 180.34315 * 21 20 19 24 24 C 1.38180 * 118.82138 * 0.08506 * 23 21 20 25 25 N 1.31534 * 120.63052 * 359.85507 * 24 23 21 26 26 C 1.32729 * 122.43446 * 359.94274 * 25 24 23 27 27 H 0.97000 * 119.99981 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47237 * 59.99891 * 9 7 2 29 29 H 1.09005 * 109.47447 * 299.99874 * 9 7 2 30 30 H 1.08999 * 109.47140 * 59.99803 * 10 9 7 31 31 H 1.09005 * 109.46797 * 300.00244 * 10 9 7 32 32 H 1.09008 * 109.47097 * 60.00018 * 11 10 9 33 33 H 1.09005 * 109.46941 * 300.00306 * 11 10 9 34 34 H 1.09008 * 109.46595 * 60.00091 * 12 11 10 35 35 H 1.09005 * 109.47055 * 300.00467 * 12 11 10 36 36 H 1.09001 * 109.46688 * 59.99862 * 13 12 11 37 37 H 1.09005 * 109.46941 * 300.00687 * 13 12 11 38 38 H 1.09002 * 109.64141 * 68.73025 * 17 15 14 39 39 H 1.09001 * 109.64033 * 308.09822 * 17 15 14 40 40 H 1.09003 * 109.68409 * 310.07639 * 18 17 15 41 41 H 1.08995 * 109.69005 * 189.51067 * 18 17 15 42 42 H 1.09005 * 109.25391 * 188.88886 * 19 18 17 43 43 H 1.08996 * 109.22913 * 69.43003 * 19 18 17 44 44 H 1.08000 * 120.58632 * 180.02562 * 23 21 20 45 45 H 1.08004 * 119.68650 * 179.83732 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4743 -6.1501 0.0031 13 6 1.7093 -7.4751 0.0031 14 8 2.6378 -8.5612 0.0043 15 6 2.0233 -9.8513 0.0050 16 1 1.0681 -9.7942 0.5272 17 6 2.9335 -10.8425 0.7270 18 6 2.3638 -12.2529 0.5351 19 6 2.5484 -12.6517 -0.9280 20 6 2.0199 -11.5773 -1.8395 21 6 1.7636 -11.9141 -3.1670 22 17 2.0406 -13.5301 -3.7375 23 6 1.2834 -10.9367 -4.0238 24 6 1.0774 -9.6621 -3.5316 25 7 1.3297 -9.3813 -2.2716 26 6 1.7865 -10.2890 -1.4177 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6239 -2.5568 0.8903 30 1 2.8711 -3.6040 0.8922 31 1 2.8725 -3.6047 -0.8877 32 1 0.8538 -5.0455 -0.8878 33 1 0.8530 -5.0442 0.8922 34 1 3.1009 -6.0919 0.8932 35 1 3.1011 -6.0928 -0.8869 36 1 1.0830 -7.5329 -0.8871 37 1 1.0822 -7.5326 0.8929 38 1 2.9669 -10.6023 1.7897 39 1 3.9374 -10.7924 0.3052 40 1 1.3030 -12.2576 0.7859 41 1 2.8964 -12.9546 1.1770 42 1 2.0108 -13.5808 -1.1179 43 1 3.6092 -12.8030 -1.1277 44 1 1.0747 -11.1669 -5.0581 45 1 0.7060 -8.8888 -4.1878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:18 Heat of formation + Delta-G solvation = -71.940114 kcal Electronic energy + Delta-G solvation = -24090.430939 eV Core-core repulsion = 20517.500202 eV Total energy + Delta-G solvation = -3572.930737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88700 -39.19188 -37.79675 -37.39780 -36.61130 -34.82141 -33.48477 -32.05982 -31.64999 -30.04462 -28.00627 -25.40049 -25.02287 -24.40554 -23.41125 -22.38323 -21.72216 -20.87317 -18.49786 -18.33773 -17.99529 -17.62350 -16.81627 -16.52777 -16.49879 -15.82747 -15.73610 -15.40595 -14.87080 -14.75079 -14.56786 -14.40882 -14.16013 -13.84851 -13.79378 -13.36006 -13.24153 -13.21971 -12.93388 -12.78165 -12.48390 -12.42680 -12.25964 -12.11707 -11.91886 -11.85096 -11.72093 -11.62436 -11.33647 -11.30079 -11.02121 -10.86615 -10.54790 -10.42899 -10.19070 -9.92396 -8.19439 -6.30704 -0.10551 -0.04323 0.84010 1.39527 1.41444 1.52727 2.40549 2.43587 2.81172 3.10282 3.12960 3.47139 3.58916 3.72666 3.98711 4.01989 4.06371 4.12342 4.19969 4.27405 4.31170 4.37373 4.42066 4.45969 4.62000 4.66569 4.72274 4.75311 4.80455 4.86266 4.94940 4.98545 5.08800 5.11373 5.13530 5.17590 5.31542 5.32125 5.34456 5.40651 5.50011 5.56246 5.79219 5.87593 6.25338 6.27753 6.86425 6.88216 7.38240 8.92414 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024575 B = 0.001932 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.090707 B =14489.514498 C =15272.006222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.098 4.098 11 C -0.104 4.104 12 C -0.103 4.103 13 C 0.067 3.933 14 O -0.384 6.384 15 C 0.138 3.862 16 H 0.083 0.917 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.082 4.082 20 C -0.116 4.116 21 C -0.009 4.009 22 Cl -0.040 7.040 23 C -0.159 4.159 24 C 0.102 3.898 25 N -0.498 5.498 26 C 0.103 3.897 27 H 0.264 0.736 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.170 0.830 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -33.732 -4.110 34.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.141 4.141 13 C -0.009 4.009 14 O -0.303 6.303 15 C 0.080 3.920 16 H 0.100 0.900 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.044 4.044 22 Cl -0.011 7.011 23 C -0.180 4.180 24 C -0.057 4.057 25 N -0.208 5.208 26 C -0.033 4.033 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.187 0.813 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.818 -32.900 -3.847 33.343 hybrid contribution -0.132 0.318 -0.784 0.857 sum 3.686 -32.582 -4.632 33.115 Atomic orbital electron populations 1.70102 1.07795 1.27756 1.51756 1.26031 0.95852 1.03481 0.94766 0.85420 0.78641 0.78296 0.78532 1.19716 1.20574 1.18768 1.21745 0.93540 0.92567 1.50430 0.92318 1.19042 0.94523 0.93240 0.94720 1.21441 0.98007 0.93776 1.00387 1.21405 0.97823 0.93379 1.01571 1.21384 0.98249 0.92051 1.02428 1.22625 0.91796 0.85587 1.00918 1.87890 1.34108 1.13587 1.94716 1.21012 0.98061 0.84271 0.88683 0.89974 1.21671 0.98830 0.93324 1.01228 1.21569 1.02483 0.95428 0.95294 1.20616 1.02130 0.95423 0.93716 1.20600 1.00769 0.96366 0.94100 1.21487 1.00826 0.88106 0.94002 1.98386 1.94474 1.19753 1.88447 1.22380 1.00295 0.93037 1.02257 1.23173 0.95084 0.95900 0.91520 1.67529 1.11463 1.36828 1.04986 1.21957 0.95178 0.88843 0.97293 0.92763 0.99164 0.98992 0.93094 0.93397 0.92678 0.92248 0.91460 0.92284 0.91888 0.93033 0.88866 0.91023 0.90809 0.87693 0.88814 0.89059 0.81290 0.79956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.33 13.29 21.45 0.28 -58.05 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -4.28 5.15 30.59 0.16 -4.13 16 11 C -0.10 -3.71 5.21 30.59 0.16 -3.55 16 12 C -0.10 -3.16 5.58 30.59 0.17 -2.99 16 13 C 0.07 1.84 5.56 71.98 0.40 2.24 16 14 O -0.38 -10.31 9.84 -148.98 -1.47 -11.78 16 15 C 0.14 2.86 2.79 29.76 0.08 2.94 16 16 H 0.08 1.58 7.78 -2.38 -0.02 1.56 16 17 C -0.11 -1.61 5.61 30.61 0.17 -1.44 16 18 C -0.11 -1.05 5.98 30.63 0.18 -0.86 16 19 C -0.08 -0.94 5.05 29.71 0.15 -0.79 16 20 C -0.12 -2.02 5.74 -19.83 -0.11 -2.14 16 21 C -0.01 -0.15 6.36 22.61 0.14 -0.01 16 22 Cl -0.04 -0.52 27.45 -2.72 -0.07 -0.59 16 23 C -0.16 -2.45 9.94 22.33 0.22 -2.23 16 24 C 0.10 1.93 11.19 84.72 0.95 2.88 16 25 N -0.50 -12.16 8.20 -184.06 -1.51 -13.67 16 26 C 0.10 2.26 6.38 42.27 0.27 2.53 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 1.82 6.58 -2.39 -0.02 1.81 16 37 H 0.05 1.29 8.08 -2.38 -0.02 1.28 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 40 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.89 7.32 -2.38 -0.02 0.88 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -70.59 377.41 4.01 -66.58 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.96 Total: 8.11 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.79 Total: -38.04 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.22 Total: -71.72 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.47 Total: -11.78 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.07 Total: -0.59 kcal Total: -70.59 4.01 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.363 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds