Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38910 * 120.96588 * 2 1 4 4 C 1.43204 * 120.30464 * 359.97438 * 3 2 1 5 5 N 3.48201 * 81.41720 * 359.97438 * 2 1 3 6 6 C 1.41307 * 119.39505 * 180.25869 * 3 2 1 7 7 O 1.35440 * 119.32150 * 179.69903 * 6 3 2 8 8 C 1.42903 * 116.99835 * 179.73014 * 7 6 3 9 9 H 1.08994 * 110.64297 * 328.31392 * 8 7 6 10 10 C 1.55155 * 110.87109 * 205.06414 * 8 7 6 11 11 C 1.55124 * 101.48678 * 205.90119 * 10 8 7 12 12 N 1.47424 * 104.72207 * 37.30199 * 11 10 8 13 13 C 1.36932 * 125.65125 * 155.82185 * 12 11 10 14 14 H 1.07998 * 120.00011 * 199.40981 * 13 12 11 15 15 C 1.38812 * 119.99864 * 19.39910 * 13 12 11 16 16 N 1.31612 * 120.00174 * 28.45918 * 15 13 12 17 17 Si 1.86805 * 120.00061 * 208.45088 * 15 13 12 18 18 H 1.48497 * 109.47017 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47317 * 300.00639 * 17 15 13 20 20 H 1.48505 * 109.46985 * 60.00660 * 17 15 13 21 21 C 1.47023 * 108.70138 * 335.54847 * 12 11 10 22 22 N 1.31359 * 121.35721 * 359.43247 * 6 3 2 23 23 C 1.33830 * 121.66524 * 0.26943 * 22 6 3 24 24 C 1.40522 * 120.73313 * 180.02562 * 23 22 6 25 25 C 1.36149 * 119.82595 * 179.97438 * 24 23 22 26 26 C 1.39318 * 121.07224 * 0.02562 * 25 24 23 27 27 C 1.36157 * 120.83052 * 0.02562 * 26 25 24 28 28 C 1.40528 * 119.64054 * 359.96377 * 27 26 25 29 29 H 1.08995 * 109.47415 * 270.31910 * 1 2 3 30 30 H 1.09006 * 109.47076 * 30.32101 * 1 2 3 31 31 H 1.09000 * 109.47136 * 150.31962 * 1 2 3 32 32 H 1.08995 * 111.00634 * 324.14724 * 10 8 7 33 33 H 1.09003 * 111.00385 * 87.95530 * 10 8 7 34 34 H 1.09001 * 110.50102 * 278.45549 * 11 10 8 35 35 H 1.09010 * 110.34257 * 156.06372 * 11 10 8 36 36 H 0.96999 * 119.99939 * 5.64810 * 16 15 13 37 37 H 1.08998 * 109.87770 * 120.70458 * 21 12 11 38 38 H 1.08996 * 109.88326 * 241.71759 * 21 12 11 39 39 H 1.07995 * 120.09135 * 359.95919 * 24 23 22 40 40 H 1.08000 * 119.46582 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.58278 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.17903 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2217 1.1911 0.0000 4 6 1.5334 2.4469 -0.0006 5 7 0.9874 3.4430 -0.0015 6 6 3.6343 1.1524 -0.0056 7 8 4.3296 2.3146 -0.0118 8 6 5.7554 2.2176 -0.0112 9 1 6.0798 1.3285 0.5293 10 6 6.3960 3.4936 0.5962 11 6 7.7875 3.4969 -0.0894 12 7 7.5312 3.0170 -1.4596 13 6 8.3115 3.2753 -2.5548 14 1 7.9033 3.1601 -3.5480 15 6 9.6272 3.6854 -2.3884 16 7 10.3023 3.3141 -1.3213 17 14 10.4398 4.7639 -3.6791 18 1 11.8360 5.0601 -3.2691 19 1 10.4473 4.0545 -4.9836 20 1 9.6821 6.0343 -3.8109 21 6 6.3025 2.2096 -1.4542 22 7 4.2868 0.0124 0.0004 23 6 3.6473 -1.1632 0.0066 24 6 4.3652 -2.3712 0.0134 25 6 3.6957 -3.5567 0.0202 26 6 2.3031 -3.5961 0.0199 27 6 1.5725 -2.4471 0.0124 28 6 2.2303 -1.2053 0.0055 29 1 -0.3634 0.0057 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 5.8237 4.3824 0.3307 33 1 6.4950 3.4040 1.6780 34 1 8.4695 2.8219 0.4277 35 1 8.1966 4.5071 -0.1116 36 1 9.9098 2.6885 -0.6924 37 1 5.5688 2.6467 -2.1314 38 1 6.5285 1.1886 -1.7617 39 1 5.4450 -2.3594 0.0130 40 1 4.2532 -4.4817 0.0258 41 1 1.7966 -4.5500 0.0258 42 1 0.4934 -2.4899 0.0119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226445176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = 74.176078 kcal Electronic energy + Delta-G solvation = -26298.164398 eV Core-core repulsion = 22630.462240 eV Total energy + Delta-G solvation = -3667.702158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43408 -39.38601 -37.62142 -36.67344 -35.91678 -34.74332 -32.52631 -30.90835 -30.40369 -29.17084 -28.57755 -27.42470 -24.67850 -24.51673 -23.58334 -21.70898 -20.48742 -20.34206 -19.84033 -18.40372 -18.13323 -17.47776 -16.41224 -15.91775 -15.72719 -15.05920 -14.76750 -14.50371 -14.37187 -13.90940 -13.74437 -13.61046 -13.54750 -13.34202 -13.24113 -13.11164 -12.96705 -12.77400 -12.53879 -12.31028 -11.86800 -11.83585 -11.67966 -11.42900 -10.89923 -10.69727 -10.55857 -10.47913 -10.23584 -10.16481 -9.98891 -9.76403 -9.52494 -8.79301 -8.42083 -8.31680 -6.94287 -6.10914 -3.16911 -0.15173 0.48002 1.53208 2.37874 2.51344 2.84345 3.17396 3.51280 3.54946 3.55914 3.73398 3.82290 3.99830 4.07950 4.38141 4.51565 4.56029 4.61466 4.77792 4.88493 5.03541 5.07928 5.10761 5.15765 5.22958 5.29683 5.36133 5.49853 5.55923 5.59353 5.64567 5.68808 5.93227 6.01243 6.08893 6.15282 6.15943 6.27562 6.41953 6.57109 6.62427 6.88143 6.98658 7.27568 7.35500 7.65380 7.80965 8.48422 9.00607 9.80147 10.34821 11.21346 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003277 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.297858 B = 8542.503834 C = 9686.494126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.064 3.936 3 C -0.099 4.099 4 C 0.268 3.732 5 N -0.407 5.407 6 C 0.400 3.600 7 O -0.289 6.289 8 C 0.077 3.923 9 H 0.099 0.901 10 C -0.131 4.131 11 C 0.146 3.854 12 N -0.598 5.598 13 C -0.338 4.338 14 H 0.064 0.936 15 C -0.023 4.023 16 N -0.913 5.913 17 Si 1.065 2.935 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.293 1.293 21 C 0.125 3.875 22 N -0.532 5.532 23 C 0.199 3.801 24 C -0.109 4.109 25 C -0.079 4.079 26 C -0.135 4.135 27 C -0.075 4.075 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.268 0.732 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 -15.097 6.163 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 C -0.105 4.105 4 C -0.048 4.048 5 N -0.083 5.083 6 C 0.206 3.794 7 O -0.192 6.192 8 C 0.021 3.979 9 H 0.117 0.883 10 C -0.169 4.169 11 C 0.021 3.979 12 N -0.327 5.327 13 C -0.465 4.465 14 H 0.082 0.918 15 C -0.225 4.225 16 N -0.553 5.553 17 Si 0.895 3.105 18 H -0.210 1.210 19 H -0.219 1.219 20 H -0.220 1.220 21 C -0.001 4.001 22 N -0.259 5.259 23 C 0.077 3.923 24 C -0.127 4.127 25 C -0.099 4.099 26 C -0.153 4.153 27 C -0.094 4.094 28 C -0.147 4.147 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.271 -12.437 5.691 22.823 hybrid contribution -1.746 -1.405 0.265 2.257 sum -20.017 -13.841 5.956 25.055 Atomic orbital electron populations 1.21040 0.88739 1.04554 1.04175 1.20357 0.96545 0.89846 0.87870 1.15789 0.89738 0.88089 1.16893 1.24937 0.93434 0.92432 0.94014 1.81224 1.08838 1.09542 1.08682 1.19757 0.86911 0.85999 0.86764 1.86304 1.22760 1.25216 1.84884 1.23682 0.74343 1.00596 0.99241 0.88320 1.23064 0.98159 0.96359 0.99338 1.21589 0.91650 0.99022 0.85649 1.44433 1.26140 1.56742 1.05360 1.19716 0.94104 1.47224 0.85478 0.91830 1.25802 0.92259 1.01857 1.02615 1.70788 1.37122 1.32627 1.14810 0.83523 0.76007 0.76421 0.74585 1.21022 1.21945 1.22037 1.21629 0.90531 0.95388 0.92589 1.67775 1.38566 0.96948 1.22621 1.18616 0.89196 0.91329 0.93198 1.20857 1.00995 0.89804 1.01087 1.21006 0.94480 0.98046 0.96345 1.20880 0.94118 0.98494 1.01842 1.20974 0.99983 0.90803 0.97627 1.18452 0.93753 0.93645 1.08809 0.88852 0.90231 0.89316 0.90494 0.90971 0.95006 0.92427 0.92042 0.95140 0.94824 0.84174 0.85051 0.85380 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 9.19 36.01 0.33 -0.46 16 2 C 0.06 0.63 5.98 -103.49 -0.62 0.01 16 3 C -0.10 -1.28 5.76 -106.55 -0.61 -1.89 16 4 C 0.27 3.77 13.43 -22.47 -0.30 3.46 16 5 N -0.41 -6.37 18.54 41.84 0.78 -5.59 16 6 C 0.40 6.20 7.50 -16.59 -0.12 6.07 16 7 O -0.29 -5.12 9.26 -18.01 -0.17 -5.28 16 8 C 0.08 1.47 3.12 -24.90 -0.08 1.39 16 9 H 0.10 1.82 7.11 -51.93 -0.37 1.45 16 10 C -0.13 -2.49 6.83 -24.47 -0.17 -2.66 16 11 C 0.15 3.46 5.39 -2.41 -0.01 3.45 16 12 N -0.60 -15.80 3.26 -169.93 -0.55 -16.35 16 13 C -0.34 -9.82 10.00 -15.06 -0.15 -9.97 16 14 H 0.06 1.86 7.97 -52.49 -0.42 1.44 16 15 C -0.02 -0.67 5.10 -17.43 -0.09 -0.76 16 16 N -0.91 -27.74 13.01 55.49 0.72 -27.02 16 17 Si 1.07 25.73 30.00 -169.99 -5.10 20.63 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.12 2.82 7.01 -3.06 -0.02 2.80 16 22 N -0.53 -8.08 8.60 -10.74 -0.09 -8.17 16 23 C 0.20 2.48 6.61 -84.79 -0.56 1.92 16 24 C -0.11 -1.13 9.97 -39.47 -0.39 -1.53 16 25 C -0.08 -0.60 9.94 -39.93 -0.40 -0.99 16 26 C -0.14 -0.88 9.96 -39.93 -0.40 -1.27 16 27 C -0.08 -0.53 9.31 -39.47 -0.37 -0.90 16 28 C -0.14 -1.45 5.74 -106.81 -0.61 -2.06 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.55 7.18 -51.93 -0.37 0.17 16 31 H 0.09 0.34 6.50 -51.93 -0.34 0.01 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.78 6.80 -51.93 -0.35 0.43 16 35 H 0.06 1.46 8.08 -51.92 -0.42 1.04 16 36 H 0.27 8.15 6.19 -40.82 -0.25 7.90 16 37 H 0.03 0.71 8.06 -51.93 -0.42 0.30 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.54 6.42 -52.49 -0.34 0.21 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -34.03 355.87 -8.66 -42.69 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.03 Total: -2.88 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.58 Total: -3.40 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.85 Total: -57.13 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.17 Total: -5.28 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.10 Total: 20.63 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.03 -8.66 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226445176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.867 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds