Wall clock time and date at job start Tue Mar 31 2020 14:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38910 * 120.96588 * 2 1 4 4 C 1.43204 * 120.30464 * 359.97438 * 3 2 1 5 5 N 3.48201 * 81.41720 * 359.97438 * 2 1 3 6 6 C 1.41307 * 119.39505 * 180.25869 * 3 2 1 7 7 O 1.35440 * 119.32150 * 179.69903 * 6 3 2 8 8 C 1.42903 * 116.99835 * 179.73014 * 7 6 3 9 9 H 1.08994 * 110.64297 * 328.31392 * 8 7 6 10 10 C 1.55155 * 110.87109 * 205.06414 * 8 7 6 11 11 C 1.55124 * 101.48678 * 205.90119 * 10 8 7 12 12 N 1.47424 * 104.72207 * 37.30199 * 11 10 8 13 13 C 1.36932 * 125.65125 * 155.82185 * 12 11 10 14 14 H 1.07998 * 120.00011 * 199.40981 * 13 12 11 15 15 C 1.38812 * 119.99864 * 19.39910 * 13 12 11 16 16 N 1.31612 * 120.00174 * 28.45918 * 15 13 12 17 17 Si 1.86805 * 120.00061 * 208.45088 * 15 13 12 18 18 H 1.48497 * 109.47017 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47317 * 300.00639 * 17 15 13 20 20 H 1.48505 * 109.46985 * 60.00660 * 17 15 13 21 21 C 1.47023 * 108.70138 * 335.54847 * 12 11 10 22 22 N 1.31359 * 121.35721 * 359.43247 * 6 3 2 23 23 C 1.33830 * 121.66524 * 0.26943 * 22 6 3 24 24 C 1.40522 * 120.73313 * 180.02562 * 23 22 6 25 25 C 1.36149 * 119.82595 * 179.97438 * 24 23 22 26 26 C 1.39318 * 121.07224 * 0.02562 * 25 24 23 27 27 C 1.36157 * 120.83052 * 0.02562 * 26 25 24 28 28 C 1.40528 * 119.64054 * 359.96377 * 27 26 25 29 29 H 1.08995 * 109.47415 * 270.31910 * 1 2 3 30 30 H 1.09006 * 109.47076 * 30.32101 * 1 2 3 31 31 H 1.09000 * 109.47136 * 150.31962 * 1 2 3 32 32 H 1.08995 * 111.00634 * 324.14724 * 10 8 7 33 33 H 1.09003 * 111.00385 * 87.95530 * 10 8 7 34 34 H 1.09001 * 110.50102 * 278.45549 * 11 10 8 35 35 H 1.09010 * 110.34257 * 156.06372 * 11 10 8 36 36 H 0.96999 * 119.99939 * 5.64810 * 16 15 13 37 37 H 1.08998 * 109.87770 * 120.70458 * 21 12 11 38 38 H 1.08996 * 109.88326 * 241.71759 * 21 12 11 39 39 H 1.07995 * 120.09135 * 359.95919 * 24 23 22 40 40 H 1.08000 * 119.46582 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.58278 * 180.02562 * 26 25 24 42 42 H 1.07997 * 120.17903 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2217 1.1911 0.0000 4 6 1.5334 2.4469 -0.0006 5 7 0.9874 3.4430 -0.0015 6 6 3.6343 1.1524 -0.0056 7 8 4.3296 2.3146 -0.0118 8 6 5.7554 2.2176 -0.0112 9 1 6.0798 1.3285 0.5293 10 6 6.3960 3.4936 0.5962 11 6 7.7875 3.4969 -0.0894 12 7 7.5312 3.0170 -1.4596 13 6 8.3115 3.2753 -2.5548 14 1 7.9033 3.1601 -3.5480 15 6 9.6272 3.6854 -2.3884 16 7 10.3023 3.3141 -1.3213 17 14 10.4398 4.7639 -3.6791 18 1 11.8360 5.0601 -3.2691 19 1 10.4473 4.0545 -4.9836 20 1 9.6821 6.0343 -3.8109 21 6 6.3025 2.2096 -1.4542 22 7 4.2868 0.0124 0.0004 23 6 3.6473 -1.1632 0.0066 24 6 4.3652 -2.3712 0.0134 25 6 3.6957 -3.5567 0.0202 26 6 2.3031 -3.5961 0.0199 27 6 1.5725 -2.4471 0.0124 28 6 2.2303 -1.2053 0.0055 29 1 -0.3634 0.0057 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 5.8237 4.3824 0.3307 33 1 6.4950 3.4040 1.6780 34 1 8.4695 2.8219 0.4277 35 1 8.1966 4.5071 -0.1116 36 1 9.9098 2.6885 -0.6924 37 1 5.5688 2.6467 -2.1314 38 1 6.5285 1.1886 -1.7617 39 1 5.4450 -2.3594 0.0130 40 1 4.2532 -4.4817 0.0258 41 1 1.7966 -4.5500 0.0258 42 1 0.4934 -2.4899 0.0119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226445176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:47 Heat of formation + Delta-G solvation = 52.772665 kcal Electronic energy + Delta-G solvation = -26299.092520 eV Core-core repulsion = 22630.462240 eV Total energy + Delta-G solvation = -3668.630279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35821 -40.61989 -38.86747 -38.04497 -36.97932 -35.61517 -34.54188 -31.83261 -31.32956 -30.90332 -29.46702 -28.97571 -26.47369 -25.45367 -24.64810 -22.80406 -22.30064 -21.62751 -20.78344 -19.71491 -19.48147 -19.08171 -17.40040 -17.04465 -16.56419 -16.52280 -16.13194 -15.78734 -15.40852 -15.21488 -15.11160 -15.00361 -14.57502 -14.52988 -14.40650 -14.26236 -14.13399 -13.91444 -13.79283 -13.32192 -13.08246 -12.77349 -12.70516 -12.58118 -12.55558 -12.48543 -12.43397 -11.91016 -11.81579 -11.70121 -11.53839 -11.22298 -10.76672 -10.58938 -9.65330 -9.15737 -9.11582 -8.41018 -5.45020 -0.92885 -0.39342 0.80354 1.42643 1.49090 1.54991 1.62449 1.65979 1.83467 2.22743 2.57756 2.59702 3.00283 3.06385 3.10699 3.35383 3.41163 3.48134 3.56293 3.74332 3.81584 3.87138 4.00526 4.23104 4.24938 4.29010 4.38319 4.47690 4.48185 4.58397 4.63598 4.70496 4.75937 4.83836 4.88857 4.90807 5.05641 5.07054 5.12956 5.33553 5.40192 5.52258 5.58690 5.82171 6.01391 6.23406 6.29635 6.68653 6.79545 7.59861 8.17103 8.90180 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003277 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.297858 B = 8542.503834 C = 9686.494126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.091 3.909 3 C -0.125 4.125 4 C 0.286 3.714 5 N -0.445 5.445 6 C 0.376 3.624 7 O -0.303 6.303 8 C 0.099 3.901 9 H 0.102 0.898 10 C -0.115 4.115 11 C 0.149 3.851 12 N -0.621 5.621 13 C -0.358 4.358 14 H 0.054 0.946 15 C -0.070 4.070 16 N -0.934 5.934 17 Si 1.118 2.882 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.281 1.281 21 C 0.128 3.872 22 N -0.562 5.562 23 C 0.169 3.831 24 C -0.142 4.142 25 C -0.059 4.059 26 C -0.127 4.127 27 C -0.065 4.065 28 C -0.150 4.150 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.020 0.980 35 H 0.034 0.966 36 H 0.256 0.744 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.126 0.874 40 H 0.159 0.841 41 H 0.169 0.831 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 -17.847 6.425 29.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.081 3.919 3 C -0.132 4.132 4 C -0.029 4.029 5 N -0.121 5.121 6 C 0.181 3.819 7 O -0.207 6.207 8 C 0.043 3.957 9 H 0.120 0.880 10 C -0.153 4.153 11 C 0.024 3.976 12 N -0.349 5.349 13 C -0.486 4.486 14 H 0.072 0.928 15 C -0.266 4.266 16 N -0.576 5.576 17 Si 0.942 3.058 18 H -0.211 1.211 19 H -0.199 1.199 20 H -0.208 1.208 21 C 0.002 3.998 22 N -0.288 5.288 23 C 0.049 3.951 24 C -0.161 4.161 25 C -0.079 4.079 26 C -0.145 4.145 27 C -0.083 4.083 28 C -0.153 4.153 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.144 0.856 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.244 -15.234 5.961 26.813 hybrid contribution -0.949 -0.897 0.185 1.319 sum -22.193 -16.132 6.146 28.116 Atomic orbital electron populations 1.21256 0.85523 1.05894 1.05887 1.20818 0.98402 0.88463 0.84231 1.15825 0.88618 0.88764 1.20001 1.25088 0.92635 0.92311 0.92837 1.81222 1.10136 1.10271 1.10493 1.19943 0.87677 0.85501 0.88774 1.86251 1.21361 1.27037 1.86046 1.23206 0.75785 1.00508 0.96234 0.88004 1.22931 0.95027 0.96480 1.00889 1.21514 0.94122 0.97078 0.84880 1.44696 1.26628 1.57735 1.05836 1.19962 0.94801 1.47632 0.86164 0.92795 1.27280 0.92988 1.02399 1.03972 1.70899 1.37527 1.33493 1.15653 0.82831 0.74952 0.75141 0.72921 1.21075 1.19905 1.20761 1.21612 0.89098 0.93812 0.95276 1.67655 1.39875 0.97834 1.23451 1.19025 0.90919 0.90814 0.94386 1.20935 1.00761 0.90548 1.03854 1.21431 0.95630 0.97777 0.93074 1.21392 0.93437 1.00122 0.99556 1.21456 1.02050 0.89255 0.95560 1.18707 0.92725 0.95195 1.08640 0.86574 0.90946 0.85913 0.90451 0.87488 0.96189 0.94770 0.93368 0.96282 0.96159 0.85557 0.82314 0.81353 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.19 71.24 0.65 -0.44 16 2 C 0.09 1.59 5.98 -19.13 -0.11 1.48 16 3 C -0.13 -3.25 5.76 -21.12 -0.12 -3.37 16 4 C 0.29 8.14 13.43 88.33 1.19 9.33 16 5 N -0.44 -14.13 18.54 19.00 0.35 -13.78 16 6 C 0.38 12.09 7.50 85.52 0.64 12.73 16 7 O -0.30 -11.22 9.26 -87.36 -0.81 -12.03 16 8 C 0.10 3.94 3.12 31.78 0.10 4.04 16 9 H 0.10 3.94 7.11 -2.39 -0.02 3.93 16 10 C -0.12 -4.49 6.83 32.06 0.22 -4.27 16 11 C 0.15 7.39 5.39 86.93 0.47 7.86 16 12 N -0.62 -34.41 3.26 -691.55 -2.26 -36.67 16 13 C -0.36 -21.64 10.00 84.03 0.84 -20.80 16 14 H 0.05 3.28 7.97 -2.91 -0.02 3.26 16 15 C -0.07 -4.13 5.10 84.86 0.43 -3.70 16 16 N -0.93 -58.56 13.01 21.65 0.28 -58.28 16 17 Si 1.12 52.74 30.00 68.60 2.06 54.80 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.13 6.13 7.01 86.73 0.61 6.74 16 22 N -0.56 -17.80 8.60 -301.35 -2.59 -20.40 16 23 C 0.17 4.18 6.61 40.27 0.27 4.45 16 24 C -0.14 -2.89 9.97 22.34 0.22 -2.67 16 25 C -0.06 -0.70 9.94 22.04 0.22 -0.48 16 26 C -0.13 -0.96 9.96 22.05 0.22 -0.75 16 27 C -0.06 -0.58 9.31 22.34 0.21 -0.37 16 28 C -0.15 -2.65 5.74 -21.28 -0.12 -2.77 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.80 7.18 -2.38 -0.02 0.78 16 31 H 0.12 0.22 6.50 -2.39 -0.02 0.21 16 32 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.02 1.04 6.80 -2.39 -0.02 1.03 16 35 H 0.03 1.82 8.08 -2.38 -0.02 1.80 16 36 H 0.26 16.28 6.19 -92.71 -0.57 15.70 16 37 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.17 0.06 8.06 -2.91 -0.02 0.03 16 42 H 0.17 0.15 6.42 -2.91 -0.02 0.13 16 Total: -1.00 -79.98 355.87 4.22 -75.76 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.25 Total: 3.58 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.93 Total: 7.01 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -4.21 Total: -129.12 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.81 Total: -12.03 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.06 Total: 54.80 kcal Total: -79.98 4.22 -75.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226445176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.532 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds