Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38909 * 120.96818 * 2 1 4 4 C 1.43201 * 120.30450 * 359.97438 * 3 2 1 5 5 N 3.48196 * 81.41912 * 359.97438 * 2 1 3 6 6 C 1.41307 * 119.39518 * 180.26430 * 3 2 1 7 7 O 1.35441 * 119.32242 * 179.70063 * 6 3 2 8 8 C 1.42895 * 117.00317 * 179.72892 * 7 6 3 9 9 C 1.53514 * 114.17121 * 210.00137 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.32774 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 N 1.31352 * 121.35722 * 359.42356 * 6 3 2 22 22 C 1.33827 * 121.67123 * 0.28171 * 21 6 3 23 23 C 1.40523 * 120.74212 * 180.02562 * 22 21 6 24 24 C 1.36143 * 119.83020 * 179.97438 * 23 22 21 25 25 C 1.39326 * 121.07480 * 0.02562 * 24 23 22 26 26 C 1.36161 * 120.82684 * 0.02562 * 25 24 23 27 27 C 1.40530 * 119.64047 * 359.95782 * 26 25 24 28 28 H 1.08998 * 109.46929 * 270.32550 * 1 2 3 29 29 H 1.08997 * 109.46835 * 30.31908 * 1 2 3 30 30 H 1.08996 * 109.47203 * 150.31741 * 1 2 3 31 31 H 1.09011 * 113.25486 * 342.95220 * 8 7 6 32 32 H 1.09000 * 113.47331 * 105.56452 * 9 8 7 33 33 H 1.08997 * 113.47627 * 335.09577 * 9 8 7 34 34 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 35 35 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 38 38 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 39 39 H 1.07997 * 120.08605 * 359.96141 * 23 22 21 40 40 H 1.07999 * 119.46387 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.58747 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.18039 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2218 1.1911 0.0000 4 6 1.5336 2.4468 -0.0006 5 7 0.9875 3.4430 -0.0015 6 6 3.6344 1.1523 -0.0057 7 8 4.3298 2.3145 -0.0118 8 6 5.7555 2.2176 -0.0114 9 6 6.4649 3.3887 0.6827 10 7 7.4683 3.3512 -0.3975 11 6 7.8326 4.7086 -0.8249 12 6 9.0245 4.6427 -1.7447 13 1 9.4674 3.6881 -1.9873 14 6 9.5503 5.8015 -2.2759 15 7 9.0113 6.9641 -1.9802 16 14 11.0281 5.7198 -3.4155 17 1 11.3964 7.0920 -3.8476 18 1 12.1725 5.1023 -2.6986 19 1 10.6899 4.9003 -4.6068 20 6 6.4244 2.7842 -1.2715 21 7 4.2869 0.0123 0.0003 22 6 3.6474 -1.1633 0.0065 23 6 4.3652 -2.3714 0.0134 24 6 3.6957 -3.5568 0.0201 25 6 2.3030 -3.5962 0.0197 26 6 1.5725 -2.4472 0.0121 27 6 2.2303 -1.2054 0.0054 28 1 -0.3633 0.0058 1.0276 29 1 -0.3633 0.8871 -0.5188 30 1 -0.3633 -0.8928 -0.5089 31 1 6.1199 1.2346 0.2874 32 1 6.8707 3.1320 1.6613 33 1 5.8763 4.3059 0.6970 34 1 8.0811 5.3104 0.0494 35 1 6.9923 5.1617 -1.3509 36 1 9.3814 7.7792 -2.3536 37 1 5.8250 3.5403 -1.7787 38 1 6.7958 2.0154 -1.9491 39 1 5.4451 -2.3595 0.0131 40 1 4.2533 -4.4817 0.0249 41 1 1.7965 -4.5501 0.0247 42 1 0.4934 -2.4899 0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226445811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = 91.367336 kcal Electronic energy + Delta-G solvation = -25668.752612 eV Core-core repulsion = 22001.795923 eV Total energy + Delta-G solvation = -3666.956689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50928 -39.92708 -38.29077 -37.05345 -36.02993 -34.79496 -32.88259 -31.01703 -30.52853 -29.19267 -28.56633 -25.58409 -25.33748 -24.71969 -23.79108 -22.13244 -21.07872 -20.05025 -19.63626 -18.49413 -18.12904 -16.57621 -16.25461 -15.99207 -15.84901 -15.33277 -14.81351 -14.58994 -14.54705 -14.44629 -13.99945 -13.66839 -13.62204 -13.50411 -13.36211 -13.02882 -12.82093 -12.67144 -12.44648 -12.20366 -12.06662 -11.90414 -11.88079 -11.54294 -11.38159 -10.93690 -10.62034 -10.53644 -10.30931 -9.95586 -9.89810 -9.80456 -9.25814 -8.84491 -8.44630 -8.39220 -8.00416 -6.03927 -4.05663 -0.21113 0.41129 1.46974 2.31198 2.48675 2.77625 3.13671 3.34367 3.37763 3.41240 3.50473 3.75226 3.92352 4.01762 4.31968 4.42713 4.46472 4.51027 4.72111 4.73019 4.82715 4.86084 4.99255 5.03064 5.15961 5.19710 5.31269 5.40308 5.46922 5.51660 5.59290 5.76591 5.93948 5.96783 6.01129 6.08235 6.11603 6.23335 6.28898 6.42037 6.51701 7.12923 7.18238 7.31552 7.57284 7.60406 7.81303 8.06151 8.40930 9.01170 9.58310 11.07192 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002735 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.066232 B =10234.330789 C =11423.689799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 C -0.098 4.098 4 C 0.264 3.736 5 N -0.404 5.404 6 C 0.401 3.599 7 O -0.287 6.287 8 C 0.048 3.952 9 C -0.002 4.002 10 N -0.457 5.457 11 C 0.161 3.839 12 C -0.507 4.507 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.901 3.099 17 H -0.288 1.288 18 H -0.275 1.275 19 H -0.277 1.277 20 C 0.002 3.998 21 N -0.536 5.536 22 C 0.198 3.802 23 C -0.110 4.110 24 C -0.078 4.078 25 C -0.136 4.136 26 C -0.074 4.074 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.006 0.994 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.479 -23.464 5.662 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.104 4.104 4 C -0.051 4.051 5 N -0.079 5.079 6 C 0.207 3.793 7 O -0.189 6.189 8 C -0.008 4.008 9 C -0.131 4.131 10 N -0.181 5.181 11 C 0.035 3.965 12 C -0.545 4.545 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.729 3.271 17 H -0.213 1.213 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.128 4.128 21 N -0.263 5.263 22 C 0.076 3.924 23 C -0.129 4.129 24 C -0.098 4.098 25 C -0.154 4.154 26 C -0.093 4.093 27 C -0.146 4.146 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.782 -21.761 5.705 28.676 hybrid contribution -0.231 0.296 -0.812 0.895 sum -18.013 -21.465 4.893 28.446 Atomic orbital electron populations 1.21050 0.88718 1.04589 1.04238 1.20376 0.96588 0.89847 0.87704 1.15796 0.89777 0.88090 1.16754 1.24940 0.93576 0.92455 0.94165 1.81249 1.08709 1.09489 1.08466 1.19742 0.86924 0.86027 0.86628 1.86376 1.22700 1.25256 1.84611 1.24712 0.74224 1.01842 0.99979 1.24139 0.93534 0.96647 0.98765 1.69045 1.21975 1.23955 1.03170 1.20293 0.96643 0.83222 0.96312 1.21041 1.13087 0.93231 1.27185 0.91772 1.25016 0.97541 0.95280 0.96878 1.69950 1.41348 0.97712 1.44891 0.86505 0.82751 0.76914 0.80928 1.21330 1.20086 1.20215 1.24233 0.93030 0.99870 0.95642 1.67672 1.38627 0.96946 1.23008 1.18597 0.89203 0.91279 0.93276 1.20833 1.00930 0.89772 1.01325 1.21010 0.94486 0.98063 0.96262 1.20890 0.94134 0.98518 1.01826 1.20989 1.00039 0.90804 0.97470 1.18457 0.93767 0.93637 1.08772 0.88798 0.90182 0.89307 0.85173 0.89559 0.91066 0.95028 0.97621 0.92789 0.90962 0.89723 0.84164 0.85052 0.85367 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 9.19 36.01 0.33 -0.38 16 2 C 0.06 0.58 5.98 -103.49 -0.62 -0.04 16 3 C -0.10 -1.17 5.76 -106.56 -0.61 -1.78 16 4 C 0.26 3.56 13.43 -22.47 -0.30 3.26 16 5 N -0.40 -6.19 18.54 41.84 0.78 -5.41 16 6 C 0.40 5.62 7.51 -16.59 -0.12 5.49 16 7 O -0.29 -4.65 9.57 -18.02 -0.17 -4.83 16 8 C 0.05 0.81 4.52 -26.20 -0.12 0.69 16 9 C 0.00 -0.03 7.52 -7.53 -0.06 -0.09 16 10 N -0.46 -10.16 6.32 -246.08 -1.55 -11.71 16 11 C 0.16 4.30 4.57 -4.98 -0.02 4.28 16 12 C -0.51 -14.66 9.39 -34.44 -0.32 -14.99 16 13 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.00 0.03 7.55 -7.54 -0.06 -0.03 16 21 N -0.54 -7.13 8.48 -10.74 -0.09 -7.22 16 22 C 0.20 2.16 6.61 -84.79 -0.56 1.60 16 23 C -0.11 -0.96 9.97 -39.47 -0.39 -1.35 16 24 C -0.08 -0.49 9.94 -39.93 -0.40 -0.88 16 25 C -0.14 -0.73 9.96 -39.92 -0.40 -1.13 16 26 C -0.07 -0.45 9.31 -39.47 -0.37 -0.82 16 27 C -0.14 -1.28 5.74 -106.80 -0.61 -1.89 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.50 7.18 -51.93 -0.37 0.13 16 30 H 0.09 0.28 6.50 -51.93 -0.34 -0.05 16 31 H 0.13 2.06 6.84 -51.92 -0.36 1.71 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 34 H 0.03 0.89 8.08 -51.92 -0.42 0.47 16 35 H 0.01 0.17 7.30 -51.93 -0.38 -0.21 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.49 7.42 -51.93 -0.39 1.11 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 42 H 0.13 0.43 6.42 -52.49 -0.34 0.10 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -33.38 361.84 -9.69 -43.06 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.08 Total: -3.28 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -4.73 Total: -6.58 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.13 Total: -50.85 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.17 Total: -4.83 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.38 -9.69 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226445811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.429 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds