Wall clock time and date at job start Tue Mar 31 2020 14:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38909 * 120.96818 * 2 1 4 4 C 1.43201 * 120.30450 * 359.97438 * 3 2 1 5 5 N 3.48196 * 81.41912 * 359.97438 * 2 1 3 6 6 C 1.41307 * 119.39518 * 180.26430 * 3 2 1 7 7 O 1.35441 * 119.32242 * 179.70063 * 6 3 2 8 8 C 1.42895 * 117.00317 * 179.72892 * 7 6 3 9 9 C 1.53514 * 114.17121 * 210.00137 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.32774 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 N 1.31352 * 121.35722 * 359.42356 * 6 3 2 22 22 C 1.33827 * 121.67123 * 0.28171 * 21 6 3 23 23 C 1.40523 * 120.74212 * 180.02562 * 22 21 6 24 24 C 1.36143 * 119.83020 * 179.97438 * 23 22 21 25 25 C 1.39326 * 121.07480 * 0.02562 * 24 23 22 26 26 C 1.36161 * 120.82684 * 0.02562 * 25 24 23 27 27 C 1.40530 * 119.64047 * 359.95782 * 26 25 24 28 28 H 1.08998 * 109.46929 * 270.32550 * 1 2 3 29 29 H 1.08997 * 109.46835 * 30.31908 * 1 2 3 30 30 H 1.08996 * 109.47203 * 150.31741 * 1 2 3 31 31 H 1.09011 * 113.25486 * 342.95220 * 8 7 6 32 32 H 1.09000 * 113.47331 * 105.56452 * 9 8 7 33 33 H 1.08997 * 113.47627 * 335.09577 * 9 8 7 34 34 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 35 35 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 38 38 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 39 39 H 1.07997 * 120.08605 * 359.96141 * 23 22 21 40 40 H 1.07999 * 119.46387 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.58747 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.18039 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2218 1.1911 0.0000 4 6 1.5336 2.4468 -0.0006 5 7 0.9875 3.4430 -0.0015 6 6 3.6344 1.1523 -0.0057 7 8 4.3298 2.3145 -0.0118 8 6 5.7555 2.2176 -0.0114 9 6 6.4649 3.3887 0.6827 10 7 7.4683 3.3512 -0.3975 11 6 7.8326 4.7086 -0.8249 12 6 9.0245 4.6427 -1.7447 13 1 9.4674 3.6881 -1.9873 14 6 9.5503 5.8015 -2.2759 15 7 9.0113 6.9641 -1.9802 16 14 11.0281 5.7198 -3.4155 17 1 11.3964 7.0920 -3.8476 18 1 12.1725 5.1023 -2.6986 19 1 10.6899 4.9003 -4.6068 20 6 6.4244 2.7842 -1.2715 21 7 4.2869 0.0123 0.0003 22 6 3.6474 -1.1633 0.0065 23 6 4.3652 -2.3714 0.0134 24 6 3.6957 -3.5568 0.0201 25 6 2.3030 -3.5962 0.0197 26 6 1.5725 -2.4472 0.0121 27 6 2.2303 -1.2054 0.0054 28 1 -0.3633 0.0058 1.0276 29 1 -0.3633 0.8871 -0.5188 30 1 -0.3633 -0.8928 -0.5089 31 1 6.1199 1.2346 0.2874 32 1 6.8707 3.1320 1.6613 33 1 5.8763 4.3059 0.6970 34 1 8.0811 5.3104 0.0494 35 1 6.9923 5.1617 -1.3509 36 1 9.3814 7.7792 -2.3536 37 1 5.8250 3.5403 -1.7787 38 1 6.7958 2.0154 -1.9491 39 1 5.4451 -2.3595 0.0131 40 1 4.2533 -4.4817 0.0249 41 1 1.7965 -4.5501 0.0247 42 1 0.4934 -2.4899 0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226445811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:43 Heat of formation + Delta-G solvation = 67.772795 kcal Electronic energy + Delta-G solvation = -25669.775748 eV Core-core repulsion = 22001.795923 eV Total energy + Delta-G solvation = -3667.979825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36669 -41.26096 -39.38476 -38.11496 -36.93031 -35.57672 -35.06069 -31.91225 -31.33874 -30.79376 -29.20428 -27.37741 -26.97548 -25.42758 -24.82790 -23.58944 -22.12533 -21.16524 -20.72732 -19.55619 -19.10173 -18.51282 -17.29345 -17.12050 -16.87611 -16.56189 -16.25566 -15.88393 -15.73289 -15.23228 -15.01157 -14.80869 -14.52052 -14.38314 -14.27663 -14.21957 -14.06643 -13.84316 -13.80428 -13.77205 -13.19843 -13.03981 -12.90996 -12.57880 -12.47226 -12.42697 -12.34031 -12.20149 -11.78713 -11.36967 -11.26534 -11.16793 -10.76417 -10.65379 -9.88099 -9.61315 -9.10196 -8.27011 -6.38472 -0.89948 -0.35993 0.84512 1.37959 1.42294 1.45179 1.50439 1.51452 1.68816 2.24973 2.36981 2.60871 3.02136 3.04639 3.07479 3.21885 3.29524 3.39589 3.50933 3.84883 3.88217 3.95242 4.20103 4.27806 4.33372 4.34837 4.47591 4.51167 4.52069 4.55808 4.64284 4.66706 4.77537 4.82861 4.90180 4.99074 5.07799 5.12100 5.36685 5.44406 5.47677 5.57025 5.66143 5.85734 5.96563 6.05231 6.29382 6.32004 6.70233 6.74882 7.31158 8.84500 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.002735 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.066232 B =10234.330789 C =11423.689799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 C -0.127 4.127 4 C 0.285 3.715 5 N -0.450 5.450 6 C 0.378 3.622 7 O -0.306 6.306 8 C 0.081 3.919 9 C -0.004 4.004 10 N -0.469 5.469 11 C 0.176 3.824 12 C -0.529 4.529 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.281 1.281 18 H -0.265 1.265 19 H -0.267 1.267 20 C -0.002 4.002 21 N -0.555 5.555 22 C 0.171 3.829 23 C -0.137 4.137 24 C -0.060 4.060 25 C -0.128 4.128 26 C -0.068 4.068 27 C -0.151 4.151 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.006 0.994 35 H -0.022 1.022 36 H 0.266 0.734 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 -27.881 5.501 34.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 C -0.134 4.134 4 C -0.030 4.030 5 N -0.126 5.126 6 C 0.184 3.816 7 O -0.210 6.210 8 C 0.025 3.975 9 C -0.133 4.133 10 N -0.193 5.193 11 C 0.049 3.951 12 C -0.568 4.568 13 H 0.081 0.919 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.206 1.206 18 H -0.190 1.190 19 H -0.192 1.192 20 C -0.132 4.132 21 N -0.282 5.282 22 C 0.050 3.950 23 C -0.156 4.156 24 C -0.080 4.080 25 C -0.146 4.146 26 C -0.086 4.086 27 C -0.153 4.153 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.024 0.976 35 H -0.004 1.004 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.162 -26.228 5.555 32.954 hybrid contribution 0.062 1.342 -0.720 1.524 sum -19.100 -24.886 4.835 31.741 Atomic orbital electron populations 1.21249 0.85878 1.05802 1.05764 1.20794 0.98259 0.88603 0.84289 1.15859 0.88938 0.88502 1.20098 1.25197 0.92628 0.92389 0.92770 1.81245 1.10277 1.10502 1.10611 1.19865 0.87483 0.85585 0.88685 1.86319 1.21806 1.27213 1.85695 1.24197 0.75255 1.01204 0.96856 1.24172 0.92946 0.97238 0.98916 1.68922 1.24208 1.21016 1.05121 1.19949 0.95255 0.85209 0.94646 1.21375 1.13931 0.93472 1.27978 0.91867 1.26009 1.00738 0.94670 0.98417 1.70085 1.42971 0.98509 1.45991 0.85343 0.78681 0.77335 0.78723 1.20572 1.18970 1.19160 1.24219 0.92624 0.99511 0.96818 1.67563 1.39553 0.97557 1.23505 1.19023 0.90699 0.90940 0.94299 1.20961 1.01069 0.90129 1.03404 1.21443 0.95424 0.98033 0.93113 1.21389 0.93702 0.99947 0.99522 1.21428 1.01956 0.89414 0.95826 1.18702 0.92998 0.94930 1.08650 0.86774 0.91116 0.85935 0.83941 0.87401 0.92247 0.97568 1.00448 0.92488 0.92798 0.89006 0.84669 0.82204 0.81640 0.81202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.19 71.24 0.65 -0.36 16 2 C 0.09 1.44 5.98 -19.13 -0.11 1.33 16 3 C -0.13 -3.09 5.76 -21.12 -0.12 -3.21 16 4 C 0.28 8.00 13.43 88.33 1.19 9.19 16 5 N -0.45 -14.51 18.54 19.00 0.35 -14.15 16 6 C 0.38 11.01 7.51 85.52 0.64 11.66 16 7 O -0.31 -10.56 9.57 -87.38 -0.84 -11.39 16 8 C 0.08 2.86 4.52 30.94 0.14 3.00 16 9 C 0.00 -0.14 7.52 83.58 0.63 0.48 16 10 N -0.47 -21.87 6.32 -932.85 -5.89 -27.77 16 11 C 0.18 9.99 4.57 85.55 0.39 10.38 16 12 C -0.53 -31.67 9.39 25.60 0.24 -31.43 16 13 H 0.06 3.71 7.81 -2.91 -0.02 3.68 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 15 N -0.94 -58.38 13.29 21.45 0.28 -58.10 16 16 Si 0.98 45.69 29.54 68.60 2.03 47.72 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.00 -0.10 7.55 83.58 0.63 0.53 16 21 N -0.56 -15.06 8.48 -301.35 -2.56 -17.61 16 22 C 0.17 3.56 6.61 40.27 0.27 3.83 16 23 C -0.14 -2.17 9.97 22.34 0.22 -1.94 16 24 C -0.06 -0.51 9.94 22.04 0.22 -0.29 16 25 C -0.13 -0.68 9.96 22.05 0.22 -0.46 16 26 C -0.07 -0.48 9.31 22.34 0.21 -0.27 16 27 C -0.15 -2.29 5.74 -21.28 -0.12 -2.41 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.76 7.18 -2.39 -0.02 0.74 16 30 H 0.12 0.13 6.50 -2.39 -0.02 0.12 16 31 H 0.14 4.63 6.84 -2.38 -0.02 4.62 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.06 2.45 7.91 -2.39 -0.02 2.43 16 34 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 35 H -0.02 -1.36 7.30 -2.39 -0.02 -1.37 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.05 2.42 7.42 -2.39 -0.02 2.40 16 38 H 0.09 3.59 8.14 -2.39 -0.02 3.58 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 41 H 0.17 -0.23 8.06 -2.91 -0.02 -0.25 16 42 H 0.17 -0.05 6.42 -2.91 -0.02 -0.07 16 Total: -1.00 -77.78 361.84 0.19 -77.59 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.06 Total: 3.24 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.75 Total: 0.47 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.81 Total: -117.63 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.84 Total: -11.39 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.78 0.19 -77.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226445811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.364 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds