Wall clock time and date at job start Tue Mar 31 2020 14:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46507 * 299.99570 * 3 2 1 6 6 H 1.48499 * 109.47110 * 59.99503 * 3 2 1 7 7 C 1.37878 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00228 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00198 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47039 * 300.00345 * 9 7 2 11 11 C 1.53000 * 109.46801 * 59.99758 * 9 7 2 12 12 Cl 1.80305 * 109.47234 * 185.00080 * 11 9 7 13 13 O 1.42898 * 109.47544 * 179.97438 * 9 7 2 14 14 C 1.35896 * 116.99962 * 146.94629 * 13 9 7 15 15 C 1.38759 * 120.05895 * 356.50713 * 14 13 9 16 16 C 1.38122 * 119.94096 * 180.25391 * 15 14 13 17 17 C 1.38284 * 120.05953 * 359.46614 * 16 15 14 18 18 C 1.38249 * 120.11133 * 0.51189 * 17 16 15 19 19 C 1.50691 * 119.97242 * 179.74383 * 18 17 16 20 20 N 1.46905 * 109.47142 * 270.02277 * 19 18 17 21 21 C 1.46845 * 110.99869 * 294.20700 * 20 19 18 22 22 C 1.53036 * 109.52284 * 174.16050 * 21 20 19 23 23 C 1.53118 * 109.27905 * 59.17960 * 22 21 20 24 24 C 1.53113 * 109.16359 * 302.35028 * 23 22 21 25 25 C 1.46845 * 110.99684 * 170.00033 * 20 19 18 26 26 C 1.38170 * 120.05234 * 359.76670 * 18 17 16 27 27 H 0.97003 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47787 * 305.00030 * 11 9 7 29 29 H 1.08993 * 109.47167 * 65.00383 * 11 9 7 30 30 H 1.07997 * 120.02340 * 359.97438 * 15 14 13 31 31 H 1.08004 * 119.96598 * 179.72506 * 16 15 14 32 32 H 1.07998 * 119.94585 * 180.27695 * 17 16 15 33 33 H 1.09005 * 109.47405 * 30.02129 * 19 18 17 34 34 H 1.08999 * 109.47455 * 150.02350 * 19 18 17 35 35 H 1.08998 * 109.46707 * 294.18189 * 21 20 19 36 36 H 1.09009 * 109.46014 * 54.14569 * 21 20 19 37 37 H 1.09004 * 109.50293 * 299.24383 * 22 21 20 38 38 H 1.08995 * 109.50194 * 179.12495 * 22 21 20 39 39 H 1.08999 * 109.52236 * 182.43761 * 23 22 21 40 40 H 1.09003 * 109.51765 * 62.25236 * 23 22 21 41 41 H 1.09010 * 109.50184 * 297.71229 * 24 23 22 42 42 H 1.08997 * 109.50421 * 177.59420 * 24 23 22 43 43 H 1.08997 * 109.46727 * 305.85416 * 25 20 19 44 44 H 1.09002 * 109.46559 * 65.82715 * 25 20 19 45 45 H 1.08001 * 120.02142 * 179.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1770 13 8 2.1796 -3.5853 0.0005 14 6 1.8090 -4.7137 0.6610 15 6 0.6091 -4.7495 1.3569 16 6 0.2374 -5.8959 2.0316 17 6 1.0546 -7.0111 2.0049 18 6 2.2504 -6.9783 1.3119 19 6 3.1412 -8.1935 1.2897 20 7 4.0772 -8.1352 2.4204 21 6 5.0091 -7.0097 2.2747 22 6 5.8700 -6.8922 3.5345 23 6 6.6445 -8.1969 3.7411 24 6 5.6531 -9.3594 3.8412 25 6 4.7983 -9.4054 2.5726 26 6 2.6295 -5.8320 0.6401 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2756 -1.7048 -1.2954 29 1 1.0039 -2.6123 -2.1365 30 1 -0.0314 -3.8801 1.3746 31 1 -0.6944 -5.9226 2.5771 32 1 0.7600 -7.9080 2.5295 33 1 2.5308 -9.0931 1.3693 34 1 3.7016 -8.2162 0.3550 35 1 5.6512 -7.1793 1.4105 36 1 4.4454 -6.0876 2.1327 37 1 5.2295 -6.7088 4.3972 38 1 6.5721 -6.0665 3.4197 39 1 7.2259 -8.1336 4.6608 40 1 7.3138 -8.3607 2.8965 41 1 5.0091 -9.2148 4.7088 42 1 6.2002 -10.2963 3.9456 43 1 4.0817 -10.2233 2.6469 44 1 5.4415 -9.5638 1.7069 45 1 3.5640 -5.8068 0.0992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229448913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:46 Heat of formation + Delta-G solvation = -33.935766 kcal Electronic energy + Delta-G solvation = -25338.516278 eV Core-core repulsion = 21767.233533 eV Total energy + Delta-G solvation = -3571.282745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.73069 -38.79028 -36.92950 -34.82769 -33.88079 -33.39313 -31.08119 -30.43594 -30.05417 -28.59816 -26.16917 -25.33612 -23.26291 -23.08606 -21.93910 -21.82178 -19.77102 -19.65713 -17.34494 -16.72530 -16.13024 -15.47895 -15.41325 -14.84110 -14.72307 -14.52554 -14.33248 -14.29324 -13.63998 -13.44046 -13.32039 -13.20446 -12.85074 -12.46446 -12.30342 -12.08045 -11.89400 -11.66136 -11.48333 -11.28045 -11.21300 -11.02972 -10.94043 -10.82352 -10.71549 -10.56713 -10.46540 -10.34621 -10.11387 -9.62534 -9.39875 -9.12482 -8.67630 -8.42703 -8.15182 -7.28613 -6.44397 -4.51643 1.84702 2.11398 3.10779 3.20191 3.25529 3.40945 3.88192 4.04729 4.39588 4.50415 4.71920 4.76665 4.83849 4.92200 5.01800 5.20899 5.28204 5.36654 5.45176 5.47324 5.53752 5.60467 5.67606 5.70588 5.80333 5.84889 5.87794 5.93103 6.01832 6.04114 6.14979 6.17598 6.28001 6.29583 6.31458 6.56978 6.72321 6.95841 7.02652 7.05953 7.11520 7.14328 7.20070 7.42371 7.55825 7.76862 8.36590 8.69375 9.16353 10.62813 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.003443 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.794779 B = 8131.457305 C = 9511.500119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.076 0.924 9 C 0.205 3.795 10 H 0.052 0.948 11 C -0.035 4.035 12 Cl -0.240 7.240 13 O -0.313 6.313 14 C 0.157 3.843 15 C -0.188 4.188 16 C -0.087 4.087 17 C -0.153 4.153 18 C -0.052 4.052 19 C 0.100 3.900 20 N -0.531 5.531 21 C 0.049 3.951 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.116 4.116 25 C 0.055 3.945 26 C -0.164 4.164 27 H 0.271 0.729 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.029 0.971 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -14.646 4.509 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.094 0.906 9 C 0.150 3.850 10 H 0.069 0.931 11 C -0.098 4.098 12 Cl -0.214 7.214 13 O -0.226 6.226 14 C 0.110 3.890 15 C -0.207 4.207 16 C -0.105 4.105 17 C -0.172 4.172 18 C -0.052 4.052 19 C -0.027 4.027 20 N -0.256 5.256 21 C -0.079 4.079 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.073 4.073 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.269 -14.496 4.817 16.512 hybrid contribution 0.470 0.807 -0.797 1.227 sum 6.739 -13.689 4.020 15.779 Atomic orbital electron populations 1.69807 1.05990 1.27948 1.48868 1.24982 0.95181 0.99834 0.93986 0.86137 0.80027 0.81692 0.77959 1.19276 1.20529 1.20486 1.21069 0.94373 0.87960 1.52432 0.90557 1.20514 0.87502 0.82997 0.93961 0.93067 1.25750 0.95435 0.86655 1.01969 1.98644 1.75763 1.48001 1.98998 1.86119 1.46362 1.21591 1.68556 1.19036 0.92276 0.87300 0.90376 1.21499 0.97877 1.00174 1.01161 1.20818 0.98827 0.92768 0.98079 1.20627 0.95363 0.98646 1.02571 1.19206 0.94856 0.93834 0.97327 1.20955 0.93561 0.96394 0.91756 1.61922 1.18306 1.03188 1.42144 1.22221 0.93867 0.95337 0.96430 1.21579 0.98206 0.97045 0.98628 1.21586 0.97635 0.95319 1.01359 1.21574 0.97466 0.98028 0.98280 1.22079 0.96254 0.91860 0.97063 1.20146 1.00825 0.91738 1.05606 0.91875 0.84944 0.90841 0.84712 0.86769 0.87006 0.90173 0.94255 0.95238 0.89369 0.91071 0.91604 0.92041 0.92502 0.91084 0.91874 0.90941 0.95219 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.02 11.29 55.43 0.63 -22.40 16 2 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 3 Si 0.92 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.52 -13.54 8.89 -34.44 -0.31 -13.85 16 8 H 0.08 2.01 7.81 -52.48 -0.41 1.60 16 9 C 0.21 4.98 2.19 -27.88 -0.06 4.92 16 10 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16 11 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 12 Cl -0.24 -4.99 25.62 -51.86 -1.33 -6.31 16 13 O -0.31 -7.28 9.73 -19.41 -0.19 -7.47 16 14 C 0.16 3.23 5.96 -39.21 -0.23 3.00 16 15 C -0.19 -3.71 7.05 -39.43 -0.28 -3.99 16 16 C -0.09 -1.46 10.04 -39.61 -0.40 -1.86 16 17 C -0.15 -2.38 9.70 -39.56 -0.38 -2.76 16 18 C -0.05 -0.80 4.89 -104.65 -0.51 -1.31 16 19 C 0.10 1.27 5.12 -4.98 -0.03 1.25 16 20 N -0.53 -6.52 4.65 -236.11 -1.10 -7.61 16 21 C 0.05 0.62 5.16 -3.84 -0.02 0.60 16 22 C -0.12 -1.28 6.09 -26.65 -0.16 -1.45 16 23 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 24 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 25 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 26 C -0.16 -2.92 7.81 -39.43 -0.31 -3.23 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.13 3.24 5.95 -51.93 -0.31 2.93 16 29 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.14 2.86 5.12 -52.49 -0.27 2.59 16 31 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 34 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 1.31 5.75 -51.92 -0.30 1.01 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.65 8.02 -51.93 -0.42 0.24 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.12 1.99 7.95 -52.49 -0.42 1.57 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -26.02 363.75 -11.44 -37.46 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.02 Total: 5.74 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.90 Total: -19.69 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: -0.47 Total: -30.01 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.19 Total: -7.47 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -4.99 SS G_CDS: -1.33 Total: -6.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.02 -11.44 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229448913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.521 kcal (2) G-P(sol) polarization free energy of solvation -26.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds