Wall clock time and date at job start Tue Mar 31 2020 14:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38160 * 119.97581 * 2 1 4 4 C 1.38710 * 119.95239 * 179.76897 * 3 2 1 5 5 O 1.35912 * 120.04189 * 180.27502 * 4 3 2 6 6 C 1.38745 * 119.91057 * 0.53257 * 4 3 2 7 7 C 1.50703 * 120.01388 * 179.74920 * 6 4 3 8 8 N 1.46894 * 109.47554 * 74.45305 * 7 6 4 9 9 C 1.46902 * 111.00449 * 72.50593 * 8 7 6 10 10 C 1.50697 * 109.47518 * 195.60469 * 9 8 7 11 11 H 1.08004 * 119.99748 * 5.08613 * 10 9 8 12 12 C 1.37874 * 120.00278 * 185.07513 * 10 9 8 13 13 N 1.31515 * 120.00171 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99802 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47360 * 89.99776 * 14 12 10 16 16 H 1.48502 * 109.47183 * 209.99631 * 14 12 10 17 17 H 1.48501 * 109.47218 * 329.99517 * 14 12 10 18 18 C 1.46896 * 111.00219 * 196.46668 * 8 7 6 19 19 C 1.54962 * 110.92201 * 312.89093 * 18 8 7 20 20 C 1.54269 * 104.16160 * 156.29733 * 19 18 8 21 21 C 1.53870 * 106.63946 * 336.44787 * 20 19 18 22 22 C 1.54275 * 106.59842 * 359.97416 * 21 20 19 23 23 C 1.38117 * 119.96151 * 359.46652 * 6 4 3 24 24 C 1.38350 * 119.97511 * 180.02562 * 2 1 3 25 25 Cl 1.73598 * 119.95980 * 359.97402 * 24 2 1 26 26 H 1.08999 * 109.47073 * 269.97949 * 1 2 3 27 27 H 1.08999 * 109.47345 * 29.97541 * 1 2 3 28 28 H 1.09005 * 109.47150 * 149.97736 * 1 2 3 29 29 H 1.07992 * 120.02416 * 0.04844 * 3 2 1 30 30 H 0.96708 * 114.00498 * 270.25316 * 5 4 3 31 31 H 1.09002 * 109.47163 * 314.44672 * 7 6 4 32 32 H 1.09008 * 109.46525 * 194.45141 * 7 6 4 33 33 H 1.09000 * 109.47014 * 315.60753 * 9 8 7 34 34 H 1.09000 * 109.46776 * 75.60484 * 9 8 7 35 35 H 0.97003 * 119.99923 * 180.02562 * 13 12 10 36 36 H 1.09006 * 110.67345 * 189.59484 * 18 8 7 37 37 H 1.09006 * 110.47529 * 37.64274 * 19 18 8 38 38 H 1.08999 * 110.53519 * 274.97656 * 19 18 8 39 39 H 1.08997 * 110.03259 * 217.14110 * 20 19 18 40 40 H 1.08993 * 110.03139 * 95.75936 * 20 19 18 41 41 H 1.09001 * 110.03156 * 119.25524 * 21 20 19 42 42 H 1.08997 * 110.03505 * 240.64217 * 21 20 19 43 43 H 1.09007 * 110.48242 * 142.28688 * 22 21 20 44 44 H 1.08996 * 110.48443 * 264.79739 * 22 21 20 45 45 H 1.07999 * 119.97937 * 180.23662 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1962 0.0048 5 8 4.2653 2.3725 0.0105 6 6 4.2758 -0.0067 -0.0015 7 6 5.7829 -0.0100 -0.0020 8 7 6.2738 0.3533 1.3340 9 6 6.0586 -0.7413 2.2897 10 6 6.2086 -0.2181 3.6950 11 1 6.3589 0.8379 3.8648 12 6 6.1537 -1.0873 4.7638 13 7 6.2850 -0.6307 5.9901 14 14 5.8941 -2.9137 4.4699 15 1 7.2110 -3.5820 4.3133 16 1 5.1741 -3.5038 5.6269 17 1 5.0909 -3.1073 3.2360 18 6 7.6901 0.7405 1.2871 19 6 8.5168 -0.2831 0.4685 20 6 9.7493 0.5169 -0.0016 21 6 9.3414 2.0005 0.0079 22 6 7.8745 2.0513 0.4829 23 6 3.5821 -1.2010 -0.0015 24 6 2.1983 -1.1984 -0.0005 25 17 1.3286 -2.7009 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6574 2.1320 0.0008 30 1 4.4621 2.7174 -0.8713 31 1 6.1476 0.7126 -0.7321 32 1 6.1439 -1.0047 -0.2636 33 1 5.0554 -1.1466 2.1580 34 1 6.7937 -1.5267 2.1141 35 1 6.2468 -1.2424 6.7421 36 1 8.0940 0.8450 2.2942 37 1 7.9434 -0.6386 -0.3877 38 1 8.8219 -1.1189 1.0980 39 1 10.0291 0.2130 -1.0102 40 1 10.5827 0.3543 0.6818 41 1 9.9763 2.5579 0.6967 42 1 9.4242 2.4169 -0.9959 43 1 7.7107 2.9181 1.1233 44 1 7.1977 2.0757 -0.3711 45 1 4.1200 -2.1375 -0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231869339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:38 Heat of formation + Delta-G solvation = -50.985821 kcal Electronic energy + Delta-G solvation = -26103.207705 eV Core-core repulsion = 22531.185613 eV Total energy + Delta-G solvation = -3572.022091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21233 -39.82065 -38.15880 -37.00674 -36.39939 -34.75406 -33.57864 -30.72982 -30.35725 -29.53110 -29.27905 -27.07482 -25.24177 -23.85144 -23.15395 -22.13992 -21.00283 -20.18362 -18.92780 -18.79185 -17.61943 -17.40397 -16.79887 -16.51051 -16.29464 -15.98070 -15.48979 -15.10617 -14.78322 -14.56182 -14.50215 -14.41352 -14.21470 -13.74689 -13.60751 -13.53412 -13.27150 -12.95827 -12.80296 -12.63881 -12.60349 -12.26306 -12.12963 -12.04550 -11.90976 -11.86477 -11.79277 -11.74340 -11.50851 -11.31252 -11.20620 -11.07878 -10.78517 -9.77524 -9.29701 -8.83745 -8.29226 -6.29767 0.11405 0.22753 1.14634 1.26746 1.29844 1.39954 2.30522 2.45896 3.04671 3.29262 3.31360 3.70489 3.76800 3.85562 3.91592 4.00415 4.13649 4.29991 4.42399 4.45480 4.57771 4.61129 4.62364 4.71437 4.73360 4.78541 4.79731 4.83861 4.89074 4.95620 5.01113 5.07604 5.12205 5.17546 5.19816 5.26404 5.35256 5.41187 5.44239 5.49419 5.56978 5.63096 5.74447 6.06115 6.49320 6.70598 6.76936 6.99945 7.33055 8.88030 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009208 B = 0.005616 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.169895 B = 4984.291933 C = 6766.175620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.144 4.144 4 C 0.141 3.859 5 O -0.489 6.489 6 C -0.107 4.107 7 C 0.101 3.899 8 N -0.517 5.517 9 C 0.178 3.822 10 C -0.503 4.503 11 H 0.033 0.967 12 C 0.010 3.990 13 N -0.948 5.948 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.253 1.253 18 C 0.084 3.916 19 C -0.158 4.158 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.062 4.062 25 Cl -0.070 7.070 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.404 0.596 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.020 0.980 34 H -0.016 1.016 35 H 0.265 0.735 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 2.151 -20.805 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.163 4.163 4 C 0.095 3.905 5 O -0.301 6.301 6 C -0.109 4.109 7 C -0.026 4.026 8 N -0.238 5.238 9 C 0.051 3.949 10 C -0.542 4.542 11 H 0.052 0.948 12 C -0.187 4.187 13 N -0.589 5.589 14 Si 0.759 3.241 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.177 1.177 18 C -0.025 4.025 19 C -0.197 4.197 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.141 4.141 23 C -0.117 4.117 24 C -0.089 4.089 25 Cl -0.041 7.041 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.175 0.825 30 H 0.262 0.738 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.001 0.999 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.579 2.322 -19.860 20.759 hybrid contribution 0.501 -1.732 0.311 1.829 sum -5.078 0.590 -19.549 20.206 Atomic orbital electron populations 1.20912 0.88230 1.04536 1.03439 1.19886 0.98081 0.90403 0.98363 1.21465 0.93100 0.98657 1.03042 1.18357 0.89833 0.85219 0.97057 1.84932 1.76166 1.34726 1.34273 1.20228 0.96638 0.92384 1.01628 1.20942 0.89575 0.99968 0.92158 1.61865 1.17476 1.38686 1.05808 1.19832 0.94707 0.89248 0.91082 1.21226 1.47734 0.94566 0.90636 0.94824 1.25747 0.94902 1.03345 0.94682 1.70048 1.52772 1.36870 0.99258 0.85885 0.79214 0.80345 0.78634 1.19141 1.20705 1.17667 1.22640 0.86348 0.95382 0.98104 1.23038 0.98342 0.98536 0.99784 1.22006 0.96483 0.95088 1.01582 1.22105 0.95280 0.96123 1.02007 1.22313 0.96937 0.95717 0.99182 1.20914 0.92431 0.98467 0.99905 1.20825 0.92036 0.87306 1.08729 1.98328 1.76492 1.32238 1.97059 0.90509 0.88852 0.90518 0.82501 0.73756 0.87768 0.94442 0.96218 0.99851 0.92609 0.92965 0.90408 0.94067 0.90045 0.92509 0.92165 0.89530 0.92985 0.89963 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.61 71.24 0.68 -1.47 16 2 C -0.07 -1.68 5.88 -19.85 -0.12 -1.80 16 3 C -0.14 -3.65 9.64 22.36 0.22 -3.43 16 4 C 0.14 4.07 6.68 22.50 0.15 4.22 16 5 O -0.49 -12.87 12.85 -92.56 -1.19 -14.06 16 6 C -0.11 -3.39 4.73 -19.77 -0.09 -3.48 16 7 C 0.10 3.17 3.30 85.56 0.28 3.45 16 8 N -0.52 -21.02 4.39 -872.38 -3.83 -24.85 16 9 C 0.18 8.79 3.57 85.56 0.31 9.10 16 10 C -0.50 -30.22 8.92 25.60 0.23 -29.99 16 11 H 0.03 2.28 8.01 -2.91 -0.02 2.25 16 12 C 0.01 0.61 5.47 84.65 0.46 1.08 16 13 N -0.95 -61.28 13.96 21.45 0.30 -60.98 16 14 Si 0.94 46.13 27.37 68.60 1.88 48.00 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.25 -11.80 6.69 99.48 0.67 -11.13 16 18 C 0.08 3.12 2.80 46.23 0.13 3.25 16 19 C -0.16 -4.86 5.56 31.70 0.18 -4.68 16 20 C -0.11 -2.73 6.80 31.32 0.21 -2.51 16 21 C -0.12 -2.66 6.80 31.32 0.21 -2.45 16 22 C -0.10 -2.95 6.33 31.67 0.20 -2.75 16 23 C -0.10 -3.08 8.58 22.28 0.19 -2.88 16 24 C -0.06 -1.80 6.31 22.33 0.14 -1.66 16 25 Cl -0.07 -1.84 27.29 -2.72 -0.07 -1.91 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 28 H 0.08 1.37 6.90 -2.38 -0.02 1.35 16 29 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.40 5.83 9.06 -74.05 -0.67 5.16 16 31 H 0.10 2.67 5.83 -2.39 -0.01 2.66 16 32 H 0.04 1.16 6.66 -2.38 -0.02 1.14 16 33 H 0.02 1.00 5.92 -2.39 -0.01 0.99 16 34 H -0.02 -0.79 6.52 -2.39 -0.02 -0.81 16 35 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 36 H 0.05 2.42 7.25 -2.38 -0.02 2.41 16 37 H 0.08 2.15 5.79 -2.38 -0.01 2.13 16 38 H 0.04 1.43 7.93 -2.39 -0.02 1.41 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 2.01 6.10 -2.39 -0.01 2.00 16 45 H 0.13 3.94 8.00 -2.91 -0.02 3.92 16 Total: -1.00 -73.41 365.00 0.76 -72.65 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.29 Total: 17.16 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 3.38 Total: -36.02 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.53 Total: -85.83 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.19 Total: -14.06 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.00 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -73.41 0.76 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231869339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds