Wall clock time and date at job start Tue Mar 31 2020 14:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47327 * 244.99604 * 3 2 1 5 5 H 1.48494 * 109.47267 * 4.99911 * 3 2 1 6 6 H 1.48504 * 109.47133 * 124.99604 * 3 2 1 7 7 C 1.37873 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00422 * 174.74675 * 7 2 1 9 9 C 1.50708 * 120.00171 * 354.74300 * 7 2 1 10 10 N 1.46897 * 109.47442 * 184.65702 * 9 7 2 11 11 C 1.46898 * 110.99637 * 63.97943 * 10 9 7 12 12 C 1.50699 * 109.47312 * 66.04555 * 11 10 9 13 13 C 1.38670 * 120.41765 * 89.99691 * 12 11 10 14 14 C 1.38628 * 118.42023 * 179.74790 * 13 12 11 15 15 C 1.38224 * 119.16215 * 0.25641 * 14 13 12 16 16 N 1.31860 * 120.76035 * 0.02562 * 15 14 13 17 17 C 1.31875 * 121.72829 * 359.97438 * 16 15 14 18 18 C 1.46898 * 110.99959 * 300.02897 * 10 9 7 19 19 C 1.50699 * 109.46948 * 290.14048 * 18 10 9 20 20 C 1.36799 * 119.40180 * 95.53024 * 19 18 10 21 21 C 1.39563 * 118.66133 * 179.74288 * 20 19 18 22 22 C 1.46320 * 135.57291 * 180.13789 * 21 20 19 23 23 C 1.34194 * 106.16412 * 180.35110 * 22 21 20 24 24 O 1.34424 * 110.17533 * 359.97438 * 23 22 21 25 25 C 1.34629 * 110.90624 * 359.97438 * 24 23 22 26 26 C 1.38682 * 134.44858 * 179.97438 * 25 24 23 27 27 N 1.31809 * 120.32702 * 180.02562 * 26 25 24 28 28 H 0.97006 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.46540 * 64.66054 * 9 7 2 30 30 H 1.08996 * 109.47220 * 304.66740 * 9 7 2 31 31 H 1.09000 * 109.47319 * 306.04269 * 11 10 9 32 32 H 1.09002 * 109.47292 * 186.04473 * 11 10 9 33 33 H 1.07998 * 120.79203 * 0.03317 * 13 12 11 34 34 H 1.08005 * 120.42138 * 180.27500 * 14 13 12 35 35 H 1.07998 * 119.62152 * 179.97438 * 15 14 13 36 36 H 1.08002 * 119.62068 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.47624 * 50.14527 * 18 10 9 38 38 H 1.08997 * 109.47249 * 170.14740 * 18 10 9 39 39 H 1.08003 * 120.66801 * 359.97438 * 20 19 18 40 40 H 1.07992 * 126.91750 * 0.37070 * 22 21 20 41 41 H 1.07999 * 124.91399 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.83470 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0092 1.7505 -1.2688 5 1 1.2888 2.7438 0.1220 6 1 3.1921 1.6449 1.1470 7 6 2.0045 -1.1940 0.0005 8 1 3.0810 -1.1961 -0.0851 9 6 1.2557 -2.4964 0.1207 10 7 2.2142 -3.6061 0.2088 11 6 3.0245 -3.5060 1.4300 12 6 2.1416 -3.6983 2.6359 13 6 1.9339 -4.9656 3.1591 14 6 1.1182 -5.0942 4.2726 15 6 0.5388 -3.9636 4.8172 16 7 0.7541 -2.7745 4.2896 17 6 1.5240 -2.6147 3.2309 18 6 3.0672 -3.6610 -0.9859 19 6 2.2449 -4.0990 -2.1704 20 6 1.7109 -3.1544 -3.0035 21 6 0.9565 -3.5774 -4.0988 22 6 0.2407 -2.9184 -5.1917 23 6 -0.3006 -3.9002 -5.9293 24 8 0.0080 -5.0985 -5.4042 25 6 0.7653 -4.9586 -4.2999 26 6 1.3417 -5.8417 -3.3993 27 7 2.0505 -5.3891 -2.3844 28 1 -0.4850 0.8401 -0.0004 29 1 0.6214 -2.6329 -0.7553 30 1 0.6371 -2.4784 1.0179 31 1 3.4929 -2.5228 1.4756 32 1 3.7962 -4.2758 1.4182 33 1 2.4003 -5.8313 2.7126 34 1 0.9379 -6.0655 4.7092 35 1 -0.0983 -4.0553 5.6845 36 1 1.6773 -1.6249 2.8269 37 1 3.4857 -2.6734 -1.1794 38 1 3.8763 -4.3728 -0.8223 39 1 1.8730 -2.1026 -2.8194 40 1 0.1638 -1.8560 -5.3692 41 1 -0.8971 -3.7494 -6.8168 42 1 1.2085 -6.9054 -3.5298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232549786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:59 Heat of formation + Delta-G solvation = 88.240617 kcal Electronic energy + Delta-G solvation = -26657.229471 eV Core-core repulsion = 22990.137197 eV Total energy + Delta-G solvation = -3667.092274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37315 -39.72652 -38.99653 -36.65815 -33.05017 -32.73676 -32.33187 -31.42131 -30.19679 -30.01288 -27.35695 -26.25923 -24.32581 -23.71045 -23.02414 -22.46373 -21.37203 -21.13616 -19.78438 -17.68788 -17.11129 -16.60461 -16.35601 -16.07698 -15.80196 -15.51924 -15.05060 -14.89417 -14.56701 -14.25928 -13.82300 -13.57840 -13.15394 -12.99189 -12.89951 -12.65144 -12.54506 -12.41110 -12.18239 -11.59046 -11.39256 -11.15553 -10.96459 -10.88398 -10.81076 -10.39742 -10.22568 -10.09755 -9.74146 -9.36327 -9.28352 -8.89575 -8.70516 -8.51362 -8.43535 -8.11570 -7.26163 -6.09821 -4.20614 1.08518 1.46750 1.65542 1.81126 2.52317 2.84669 3.22043 3.29630 3.31092 4.01838 4.32882 4.33720 4.55035 4.63580 4.79502 4.96446 5.14153 5.18832 5.21584 5.23725 5.33261 5.46547 5.48349 5.60551 5.64411 5.71615 5.90657 5.94731 6.00906 6.05930 6.25645 6.31471 6.35180 6.48222 6.50257 6.51859 6.57079 6.73336 6.88752 7.12503 7.22353 7.28796 7.46988 7.83357 7.91686 8.13009 8.19218 8.33800 8.52750 8.89842 9.46420 10.94210 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004687 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.982504 B = 5972.627785 C = 7843.199647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.181 3.819 10 N -0.529 5.529 11 C 0.102 3.898 12 C -0.110 4.110 13 C -0.064 4.064 14 C -0.187 4.187 15 C 0.083 3.917 16 N -0.491 5.491 17 C 0.125 3.875 18 C 0.112 3.888 19 C 0.124 3.876 20 C -0.091 4.091 21 C -0.100 4.100 22 C -0.204 4.204 23 C 0.007 3.993 24 O -0.193 6.193 25 C -0.015 4.015 26 C 0.122 3.878 27 N -0.439 5.439 28 H 0.264 0.736 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.208 0.792 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 -9.190 -4.704 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.076 0.924 9 C 0.055 3.945 10 N -0.253 5.253 11 C -0.026 4.026 12 C -0.112 4.112 13 C -0.091 4.091 14 C -0.207 4.207 15 C -0.074 4.074 16 N -0.199 5.199 17 C -0.032 4.032 18 C -0.017 4.017 19 C -0.007 4.007 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.223 4.223 23 C -0.060 4.060 24 O -0.093 6.093 25 C -0.065 4.065 26 C -0.043 4.043 27 N -0.149 5.149 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.178 0.822 41 H 0.224 0.776 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.362 -9.570 -3.782 10.558 hybrid contribution 0.538 1.910 -1.122 2.279 sum 2.900 -7.660 -4.904 9.547 Atomic orbital electron populations 1.69948 1.05987 1.27034 1.48730 1.24909 0.94616 0.98861 0.94798 0.86826 0.79870 0.83730 0.78671 1.20399 1.21227 1.20000 1.21607 0.93485 0.91975 1.52524 0.92368 1.19882 0.91006 0.85261 0.98312 1.62514 1.16472 1.47258 0.99026 1.20804 0.93305 1.00862 0.87633 1.20814 0.99390 0.93743 0.97296 1.21420 0.96141 0.97139 0.94372 1.21994 1.00447 0.99840 0.98388 1.22636 0.97616 0.88258 0.98914 1.67731 1.14992 1.25986 1.11192 1.23014 0.90307 1.00044 0.89823 1.20766 0.93216 1.00050 0.87663 1.20659 0.97009 0.87363 0.95717 1.21385 0.95242 1.02524 0.91928 1.20211 1.00340 0.92909 0.97266 1.22510 1.03150 1.00598 0.96090 1.24040 1.00859 0.81524 0.99544 1.83935 1.57719 1.31995 1.35614 1.20955 0.98703 0.96278 0.90569 1.21730 0.95038 0.98730 0.88776 1.67538 1.13548 1.17619 1.16204 0.92641 0.95235 0.94427 0.92400 0.91659 0.85357 0.85689 0.83754 0.81840 0.91597 0.91013 0.83338 0.82242 0.77557 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.49 13.29 55.43 0.74 -23.76 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 3 Si 0.88 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.56 -13.67 7.27 -34.44 -0.25 -13.92 16 8 H 0.06 1.39 5.93 -52.49 -0.31 1.08 16 9 C 0.18 4.33 4.51 -4.97 -0.02 4.31 16 10 N -0.53 -10.64 4.66 -238.96 -1.11 -11.76 16 11 C 0.10 1.83 4.97 -4.98 -0.02 1.81 16 12 C -0.11 -2.00 4.91 -104.48 -0.51 -2.51 16 13 C -0.06 -1.01 9.86 -39.28 -0.39 -1.40 16 14 C -0.19 -2.70 10.11 -39.44 -0.40 -3.10 16 15 C 0.08 1.32 11.18 -17.54 -0.20 1.13 16 16 N -0.49 -9.55 10.36 -13.25 -0.14 -9.69 16 17 C 0.13 2.51 9.08 -17.55 -0.16 2.35 16 18 C 0.11 2.05 5.09 -4.98 -0.03 2.03 16 19 C 0.12 2.33 5.73 -82.95 -0.48 1.86 16 20 C -0.09 -1.71 8.43 -39.61 -0.33 -2.05 16 21 C -0.10 -1.73 6.47 -105.16 -0.68 -2.41 16 22 C -0.20 -2.89 11.13 -37.76 -0.42 -3.31 16 23 C 0.01 0.08 11.96 29.31 0.35 0.43 16 24 O -0.19 -2.76 10.57 4.48 0.05 -2.71 16 25 C -0.02 -0.25 7.47 -38.42 -0.29 -0.53 16 26 C 0.12 1.92 11.24 -17.40 -0.20 1.73 16 27 N -0.44 -7.86 10.22 -9.63 -0.10 -7.96 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.79 6.54 -51.92 -0.34 0.45 16 30 H 0.04 1.00 5.87 -51.93 -0.31 0.70 16 31 H 0.06 1.10 6.61 -51.93 -0.34 0.75 16 32 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.16 3.59 7.86 -52.49 -0.41 3.18 16 37 H 0.07 1.25 6.00 -51.93 -0.31 0.94 16 38 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 39 H 0.15 2.97 8.05 -52.48 -0.42 2.55 16 40 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 41 H 0.21 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -30.39 354.07 -9.30 -39.69 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.93 Total: 7.58 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.12 Total: -11.82 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.61 Total: -53.16 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: 0.05 Total: -2.71 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.39 -9.30 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232549786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.933 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds