Wall clock time and date at job start Tue Mar 31 2020 14:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47327 * 244.99604 * 3 2 1 5 5 H 1.48494 * 109.47267 * 4.99911 * 3 2 1 6 6 H 1.48504 * 109.47133 * 124.99604 * 3 2 1 7 7 C 1.37873 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00422 * 174.74675 * 7 2 1 9 9 C 1.50708 * 120.00171 * 354.74300 * 7 2 1 10 10 N 1.46897 * 109.47442 * 184.65702 * 9 7 2 11 11 C 1.46898 * 110.99637 * 63.97943 * 10 9 7 12 12 C 1.50699 * 109.47312 * 66.04555 * 11 10 9 13 13 C 1.38670 * 120.41765 * 89.99691 * 12 11 10 14 14 C 1.38628 * 118.42023 * 179.74790 * 13 12 11 15 15 C 1.38224 * 119.16215 * 0.25641 * 14 13 12 16 16 N 1.31860 * 120.76035 * 0.02562 * 15 14 13 17 17 C 1.31875 * 121.72829 * 359.97438 * 16 15 14 18 18 C 1.46898 * 110.99959 * 300.02897 * 10 9 7 19 19 C 1.50699 * 109.46948 * 290.14048 * 18 10 9 20 20 C 1.36799 * 119.40180 * 95.53024 * 19 18 10 21 21 C 1.39563 * 118.66133 * 179.74288 * 20 19 18 22 22 C 1.46320 * 135.57291 * 180.13789 * 21 20 19 23 23 C 1.34194 * 106.16412 * 180.35110 * 22 21 20 24 24 O 1.34424 * 110.17533 * 359.97438 * 23 22 21 25 25 C 1.34629 * 110.90624 * 359.97438 * 24 23 22 26 26 C 1.38682 * 134.44858 * 179.97438 * 25 24 23 27 27 N 1.31809 * 120.32702 * 180.02562 * 26 25 24 28 28 H 0.97006 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.46540 * 64.66054 * 9 7 2 30 30 H 1.08996 * 109.47220 * 304.66740 * 9 7 2 31 31 H 1.09000 * 109.47319 * 306.04269 * 11 10 9 32 32 H 1.09002 * 109.47292 * 186.04473 * 11 10 9 33 33 H 1.07998 * 120.79203 * 0.03317 * 13 12 11 34 34 H 1.08005 * 120.42138 * 180.27500 * 14 13 12 35 35 H 1.07998 * 119.62152 * 179.97438 * 15 14 13 36 36 H 1.08002 * 119.62068 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.47624 * 50.14527 * 18 10 9 38 38 H 1.08997 * 109.47249 * 170.14740 * 18 10 9 39 39 H 1.08003 * 120.66801 * 359.97438 * 20 19 18 40 40 H 1.07992 * 126.91750 * 0.37070 * 22 21 20 41 41 H 1.07999 * 124.91399 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.83470 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0092 1.7505 -1.2688 5 1 1.2888 2.7438 0.1220 6 1 3.1921 1.6449 1.1470 7 6 2.0045 -1.1940 0.0005 8 1 3.0810 -1.1961 -0.0851 9 6 1.2557 -2.4964 0.1207 10 7 2.2142 -3.6061 0.2088 11 6 3.0245 -3.5060 1.4300 12 6 2.1416 -3.6983 2.6359 13 6 1.9339 -4.9656 3.1591 14 6 1.1182 -5.0942 4.2726 15 6 0.5388 -3.9636 4.8172 16 7 0.7541 -2.7745 4.2896 17 6 1.5240 -2.6147 3.2309 18 6 3.0672 -3.6610 -0.9859 19 6 2.2449 -4.0990 -2.1704 20 6 1.7109 -3.1544 -3.0035 21 6 0.9565 -3.5774 -4.0988 22 6 0.2407 -2.9184 -5.1917 23 6 -0.3006 -3.9002 -5.9293 24 8 0.0080 -5.0985 -5.4042 25 6 0.7653 -4.9586 -4.2999 26 6 1.3417 -5.8417 -3.3993 27 7 2.0505 -5.3891 -2.3844 28 1 -0.4850 0.8401 -0.0004 29 1 0.6214 -2.6329 -0.7553 30 1 0.6371 -2.4784 1.0179 31 1 3.4929 -2.5228 1.4756 32 1 3.7962 -4.2758 1.4182 33 1 2.4003 -5.8313 2.7126 34 1 0.9379 -6.0655 4.7092 35 1 -0.0983 -4.0553 5.6845 36 1 1.6773 -1.6249 2.8269 37 1 3.4857 -2.6734 -1.1794 38 1 3.8763 -4.3728 -0.8223 39 1 1.8730 -2.1026 -2.8194 40 1 0.1638 -1.8560 -5.3692 41 1 -0.8971 -3.7494 -6.8168 42 1 1.2085 -6.9054 -3.5298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232549786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:58 Heat of formation + Delta-G solvation = 68.488496 kcal Electronic energy + Delta-G solvation = -26658.085987 eV Core-core repulsion = 22990.137197 eV Total energy + Delta-G solvation = -3667.948790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.54365 -41.09411 -40.31634 -38.22463 -34.66084 -34.23998 -33.77104 -32.73510 -31.59293 -31.20179 -29.21719 -27.64384 -26.08013 -24.95819 -24.37765 -23.95723 -22.61567 -22.35917 -21.40280 -18.93169 -18.72740 -17.95367 -17.77654 -17.28663 -17.18649 -16.84299 -16.73126 -16.45751 -16.03509 -15.51571 -15.42115 -14.98566 -14.58370 -14.45054 -14.14200 -14.00838 -13.95825 -13.80514 -13.52091 -13.17868 -12.97624 -12.74199 -12.66499 -12.50086 -12.40564 -12.02825 -11.91137 -11.68975 -11.56016 -10.71628 -10.62826 -10.53566 -10.24827 -9.92468 -9.79561 -9.40991 -8.97416 -8.11027 -6.28789 -0.14177 0.13853 0.33606 0.51014 1.36177 1.39062 1.40337 1.44937 1.73769 2.37903 2.66069 2.98551 3.14859 3.35195 3.41483 3.59151 3.65679 3.71523 3.99067 4.03375 4.09946 4.13872 4.25886 4.29640 4.34309 4.55607 4.63001 4.66592 4.72329 4.75055 4.84282 5.00398 5.01885 5.02909 5.12819 5.25810 5.31753 5.34648 5.40558 5.45409 5.54379 5.79159 5.94614 6.01331 6.06092 6.25280 6.47216 6.90658 6.99842 7.17851 7.41689 8.90710 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004687 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.982504 B = 5972.627785 C = 7843.199647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.023 3.977 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.529 5.529 11 C 0.105 3.895 12 C -0.123 4.123 13 C -0.064 4.064 14 C -0.170 4.170 15 C 0.075 3.925 16 N -0.524 5.524 17 C 0.098 3.902 18 C 0.115 3.885 19 C 0.113 3.887 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.241 4.241 23 C 0.043 3.957 24 O -0.189 6.189 25 C -0.027 4.027 26 C 0.131 3.869 27 N -0.455 5.455 28 H 0.261 0.739 29 H -0.005 1.005 30 H 0.007 0.993 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.170 0.830 41 H 0.265 0.735 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -11.929 -5.409 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.252 5.252 11 C -0.023 4.023 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.189 4.189 15 C -0.082 4.082 16 N -0.233 5.233 17 C -0.058 4.058 18 C -0.013 4.013 19 C -0.018 4.018 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.260 4.260 23 C -0.023 4.023 24 O -0.088 6.088 25 C -0.077 4.077 26 C -0.033 4.033 27 N -0.166 5.166 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.195 0.805 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.188 0.812 41 H 0.280 0.720 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.634 -12.308 -4.491 13.364 hybrid contribution 0.380 2.626 -0.951 2.818 sum 3.014 -9.682 -5.442 11.508 Atomic orbital electron populations 1.70086 1.07568 1.27445 1.50837 1.25626 0.95200 1.02100 0.94803 0.85871 0.78621 0.79854 0.78992 1.19437 1.21586 1.19440 1.21799 0.93637 0.92358 1.50510 0.91878 1.19359 0.91139 0.86474 0.95024 1.62418 1.17038 1.45104 1.00627 1.20862 0.93629 1.01106 0.86682 1.20817 0.99785 0.94474 0.97427 1.21787 0.95999 0.96652 0.94555 1.22457 0.98177 1.01207 0.97073 1.23279 0.97739 0.87640 0.99588 1.67631 1.15638 1.28463 1.11579 1.22575 0.92555 0.99329 0.91357 1.20767 0.93494 1.00022 0.87029 1.20640 0.97412 0.88007 0.95707 1.21216 0.97568 1.01298 0.93818 1.20619 1.00112 0.94514 0.97488 1.22797 1.04804 1.02003 0.96348 1.25067 0.98279 0.79678 0.99314 1.83966 1.56980 1.33147 1.34723 1.21059 0.99420 0.95670 0.91514 1.22351 0.93124 1.00382 0.87490 1.67561 1.14862 1.16722 1.17434 0.93030 0.98721 0.97486 0.94168 0.88282 0.82535 0.81166 0.80481 0.85594 0.92995 0.88529 0.86032 0.81211 0.71961 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.26 13.29 21.45 0.29 -53.97 16 2 C 0.02 1.25 5.45 84.65 0.46 1.71 16 3 Si 0.94 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -28.27 7.27 25.60 0.19 -28.08 16 8 H 0.06 3.16 5.93 -2.91 -0.02 3.14 16 9 C 0.21 10.53 4.51 85.56 0.39 10.92 16 10 N -0.53 -21.86 4.66 -909.95 -4.24 -26.11 16 11 C 0.11 3.80 4.97 85.56 0.43 4.23 16 12 C -0.12 -4.48 4.91 -19.77 -0.10 -4.58 16 13 C -0.06 -1.86 9.86 22.47 0.22 -1.64 16 14 C -0.17 -4.36 10.11 22.36 0.23 -4.14 16 15 C 0.07 2.26 11.18 84.69 0.95 3.21 16 16 N -0.52 -20.92 10.36 -195.85 -2.03 -22.94 16 17 C 0.10 4.15 9.08 84.67 0.77 4.92 16 18 C 0.12 4.33 5.09 85.56 0.44 4.77 16 19 C 0.11 4.37 5.73 42.16 0.24 4.62 16 20 C -0.12 -4.76 8.43 22.25 0.19 -4.57 16 21 C -0.12 -4.25 6.47 -20.21 -0.13 -4.38 16 22 C -0.24 -6.65 11.13 23.45 0.26 -6.39 16 23 C 0.04 0.87 11.96 66.90 0.80 1.67 16 24 O -0.19 -4.89 10.57 -6.87 -0.07 -4.96 16 25 C -0.03 -0.84 7.47 23.02 0.17 -0.66 16 26 C 0.13 3.95 11.24 84.80 0.95 4.90 16 27 N -0.46 -16.07 10.22 -184.38 -1.89 -17.95 16 28 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 29 H -0.01 -0.31 6.54 -2.38 -0.02 -0.32 16 30 H 0.01 0.40 5.87 -2.39 -0.01 0.39 16 31 H 0.04 1.58 6.61 -2.39 -0.02 1.57 16 32 H 0.10 2.89 7.84 -2.39 -0.02 2.87 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 34 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.13 6.11 7.86 -2.91 -0.02 6.09 16 37 H 0.05 2.08 6.00 -2.39 -0.01 2.06 16 38 H 0.10 3.11 7.85 -2.39 -0.02 3.09 16 39 H 0.12 5.38 8.05 -2.91 -0.02 5.35 16 40 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.26 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -71.91 354.07 1.58 -70.34 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.05 Total: 24.06 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.45 Total: -13.51 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -7.87 Total: -120.98 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.07 Total: -4.96 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -71.91 1.58 -70.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232549786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.827 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds