Wall clock time and date at job start Tue Mar 31 2020 14:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39660 * 120.12663 * 277.11270 * 3 2 1 5 5 C 1.37956 * 119.95897 * 179.72624 * 4 3 2 6 6 C 1.38284 * 120.21184 * 0.51064 * 5 4 3 7 7 C 1.50709 * 119.87501 * 179.76347 * 6 5 4 8 8 N 1.46899 * 109.47165 * 259.72687 * 7 6 5 9 9 C 1.46898 * 111.00269 * 71.71622 * 8 7 6 10 10 C 1.50702 * 109.46921 * 63.37698 * 9 8 7 11 11 H 1.08004 * 120.00072 * 355.92690 * 10 9 8 12 12 C 1.37872 * 120.00275 * 175.93317 * 10 9 8 13 13 N 1.31516 * 119.99977 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00446 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47136 * 59.99675 * 14 12 10 16 16 H 1.48502 * 109.47197 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46827 * 299.99870 * 14 12 10 18 18 C 1.46899 * 110.99516 * 195.67144 * 8 7 6 19 19 C 1.50707 * 109.46661 * 169.99982 * 18 8 7 20 20 C 1.38670 * 120.41754 * 90.00097 * 19 18 8 21 21 C 1.38630 * 118.41979 * 179.97438 * 20 19 18 22 22 C 1.38231 * 119.16145 * 0.25528 * 21 20 19 23 23 N 1.31859 * 120.76031 * 359.49342 * 22 21 20 24 24 C 1.31883 * 121.72631 * 0.49724 * 23 22 21 25 25 C 1.38819 * 120.25285 * 359.49110 * 6 5 4 26 26 O 1.35902 * 119.98307 * 180.27646 * 25 6 5 27 27 C 1.38484 * 120.03417 * 0.25256 * 25 6 5 28 28 H 1.08001 * 120.02177 * 359.97438 * 4 3 2 29 29 H 1.08009 * 119.89324 * 180.27758 * 5 4 3 30 30 H 1.08993 * 109.46788 * 139.72424 * 7 6 5 31 31 H 1.09003 * 109.46740 * 19.72499 * 7 6 5 32 32 H 1.08995 * 109.47249 * 183.37466 * 9 8 7 33 33 H 1.08999 * 109.47353 * 303.38081 * 9 8 7 34 34 H 0.97000 * 120.00343 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47591 * 50.00283 * 18 8 7 36 36 H 1.08997 * 109.47431 * 289.99426 * 18 8 7 37 37 H 1.07999 * 120.79263 * 359.95276 * 20 19 18 38 38 H 1.07996 * 120.41918 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.61847 * 179.74364 * 22 21 20 40 40 H 1.08000 * 119.61682 * 179.74672 * 24 23 22 41 41 H 0.96706 * 114.00435 * 90.00125 * 26 25 6 42 42 H 1.08001 * 120.10526 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2690 -0.1486 1.1986 5 6 4.6485 -0.1532 1.1939 6 6 5.3408 0.0002 0.0067 7 6 6.8479 -0.0005 0.0111 8 7 7.3385 1.3824 -0.0577 9 6 7.1051 2.0875 1.2097 10 6 7.8944 1.4220 2.3075 11 1 8.4557 0.5228 2.1002 12 6 7.8998 1.9607 3.5766 13 7 7.2167 3.0558 3.8290 14 14 8.8787 1.1362 4.9372 15 1 10.3140 1.0947 4.5589 16 1 8.7214 1.9067 6.1969 17 1 8.3792 -0.2479 5.1373 18 6 8.7600 1.4189 -0.4264 19 6 9.1647 2.8392 -0.7265 20 6 9.6471 3.6597 0.2820 21 6 10.0078 4.9589 -0.0403 22 6 9.8706 5.3918 -1.3459 23 7 9.4127 4.5820 -2.2803 24 6 9.0604 3.3401 -2.0101 25 6 4.6530 0.1493 -1.1898 26 8 5.3389 0.2940 -2.3540 27 6 3.2681 0.1501 -1.1977 28 1 2.7315 -0.2644 2.1282 29 1 5.1896 -0.2732 2.1210 30 1 7.2134 -0.5590 -0.8506 31 1 7.2083 -0.4688 0.9271 32 1 7.4228 3.1255 1.1118 33 1 6.0434 2.0540 1.4540 34 1 7.2208 3.4351 4.7217 35 1 8.9224 0.8006 -1.3093 36 1 9.3596 1.0371 0.3998 37 1 9.7392 3.2955 1.2945 38 1 10.3869 5.6257 0.7199 39 1 10.1455 6.4037 -1.6044 40 1 8.6856 2.7075 -2.8011 41 1 5.5372 -0.5407 -2.8002 42 1 2.7318 0.2664 -2.1279 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233383765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:12 Heat of formation + Delta-G solvation = 55.118035 kcal Electronic energy + Delta-G solvation = -26548.930636 eV Core-core repulsion = 22880.402060 eV Total energy + Delta-G solvation = -3668.528577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.99015 -39.60173 -37.18535 -36.83264 -35.81843 -32.70863 -32.60974 -31.46172 -30.63175 -29.78634 -27.39647 -26.47252 -24.45184 -23.03262 -22.74692 -22.56903 -21.42533 -19.83184 -19.34908 -16.92865 -16.81946 -16.42798 -16.01726 -15.81347 -15.40659 -15.04143 -14.81067 -14.48012 -14.46336 -13.84847 -13.70770 -13.58912 -13.23080 -13.12038 -12.93450 -12.72157 -12.49550 -12.41964 -11.91306 -11.79425 -11.66851 -11.52469 -11.15507 -11.04838 -10.82279 -10.68402 -10.50646 -10.28089 -10.14027 -9.81883 -9.16218 -8.96724 -8.75739 -8.54895 -8.52978 -8.39247 -7.29274 -6.15233 -4.26356 0.85279 1.40214 1.62543 1.86306 2.67240 2.98602 3.16104 3.23676 3.25457 3.86188 3.88244 4.26819 4.30301 4.43884 4.89772 4.94973 5.02200 5.13366 5.13828 5.28464 5.31824 5.51046 5.55508 5.59549 5.68197 5.75083 5.86638 5.89873 6.04183 6.15676 6.24773 6.26472 6.31203 6.41794 6.48106 6.72507 6.74814 6.87909 6.95639 7.11351 7.25171 7.42135 7.49309 7.79021 7.81398 7.88647 8.10859 8.14532 8.43813 8.84814 9.40690 10.88497 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.004798 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.864424 B = 5834.523580 C = 7880.453779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.265 3.735 3 C -0.030 4.030 4 C -0.080 4.080 5 C -0.084 4.084 6 C -0.051 4.051 7 C 0.096 3.904 8 N -0.523 5.523 9 C 0.182 3.818 10 C -0.553 4.553 11 H 0.056 0.944 12 C 0.071 3.929 13 N -0.883 5.883 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.103 3.897 19 C -0.108 4.108 20 C -0.048 4.048 21 C -0.180 4.180 22 C 0.082 3.918 23 N -0.497 5.497 24 C 0.106 3.894 25 C 0.121 3.879 26 O -0.480 6.480 27 C -0.106 4.106 28 H 0.131 0.869 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.382 0.618 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -6.015 -8.218 10.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.050 4.050 3 C -0.034 4.034 4 C -0.101 4.101 5 C -0.103 4.103 6 C -0.052 4.052 7 C -0.031 4.031 8 N -0.247 5.247 9 C 0.056 3.944 10 C -0.592 4.592 11 H 0.074 0.926 12 C -0.133 4.133 13 N -0.520 5.520 14 Si 0.709 3.291 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.025 4.025 19 C -0.111 4.111 20 C -0.074 4.074 21 C -0.199 4.199 22 C -0.075 4.075 23 N -0.206 5.206 24 C -0.051 4.051 25 C 0.076 3.924 26 O -0.288 6.288 27 C -0.127 4.127 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.237 0.763 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.541 -4.719 -9.174 10.331 hybrid contribution 1.410 -1.348 2.491 3.165 sum 0.869 -6.067 -6.683 9.068 Atomic orbital electron populations 1.81212 1.12155 1.09667 1.07782 1.25758 0.92689 0.93181 0.93329 1.15735 0.83967 1.08799 0.94891 1.21151 0.94423 0.98189 0.96307 1.21145 0.93031 0.97500 0.98584 1.20520 0.97134 0.95313 0.92276 1.20834 0.89181 0.92089 1.01036 1.62559 1.14341 1.12198 1.35557 1.19867 0.97063 0.94620 0.82839 1.21619 1.31073 1.11316 0.95179 0.92552 1.24903 0.95235 0.94714 0.98406 1.69935 1.40498 1.19936 1.21662 0.86841 0.80770 0.79703 0.81823 1.20279 1.21268 1.20227 1.20801 0.90724 0.91408 0.99607 1.20764 0.98456 0.97736 0.94100 1.21811 0.92448 0.92856 1.00291 1.22095 1.02844 0.97198 0.97809 1.22557 0.96601 0.98864 0.89472 1.67616 1.11452 1.04758 1.36797 1.22540 0.95451 0.91604 0.95465 1.17984 0.88598 0.99729 0.86103 1.84959 1.75718 1.33933 1.34205 1.21297 0.93710 1.00495 0.97209 0.85142 0.83773 0.91657 0.92195 0.94406 0.95063 0.92640 0.91795 0.92614 0.83764 0.85562 0.83769 0.83369 0.76300 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.70 18.54 41.84 0.78 -5.92 16 2 C 0.27 3.64 15.33 -22.48 -0.34 3.30 16 3 C -0.03 -0.39 5.73 -106.96 -0.61 -1.00 16 4 C -0.08 -1.04 9.75 -39.15 -0.38 -1.42 16 5 C -0.08 -1.22 8.73 -39.67 -0.35 -1.56 16 6 C -0.05 -0.74 4.80 -104.39 -0.50 -1.24 16 7 C 0.10 1.48 4.60 -4.97 -0.02 1.46 16 8 N -0.52 -9.48 4.65 -238.96 -1.11 -10.59 16 9 C 0.18 4.04 4.58 -4.98 -0.02 4.02 16 10 C -0.55 -12.76 6.97 -34.44 -0.24 -13.00 16 11 H 0.06 1.28 5.95 -52.48 -0.31 0.96 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.88 -23.41 13.29 55.43 0.74 -22.67 16 14 Si 0.88 19.17 29.54 -169.99 -5.02 14.14 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 16 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.10 1.71 4.93 -4.97 -0.02 1.69 16 19 C -0.11 -1.87 4.89 -104.48 -0.51 -2.38 16 20 C -0.05 -0.86 8.14 -39.28 -0.32 -1.18 16 21 C -0.18 -2.88 10.11 -39.44 -0.40 -3.28 16 22 C 0.08 1.28 11.18 -17.54 -0.20 1.08 16 23 N -0.50 -8.48 10.36 -13.25 -0.14 -8.62 16 24 C 0.11 1.77 10.86 -17.55 -0.19 1.57 16 25 C 0.12 1.59 6.67 -39.28 -0.26 1.33 16 26 O -0.48 -5.71 12.72 -19.43 -0.25 -5.96 16 27 C -0.11 -1.30 9.69 -39.01 -0.38 -1.68 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.14 2.22 8.03 -52.48 -0.42 1.80 16 30 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 31 H 0.06 1.00 6.19 -51.93 -0.32 0.68 16 32 H 0.04 0.95 6.14 -51.93 -0.32 0.64 16 33 H 0.03 0.77 6.68 -51.93 -0.35 0.42 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.06 0.90 7.82 -51.93 -0.41 0.49 16 36 H 0.06 1.00 6.36 -51.93 -0.33 0.67 16 37 H 0.14 2.86 7.69 -52.49 -0.40 2.45 16 38 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.38 2.53 9.06 45.56 0.41 2.95 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -29.05 362.88 -8.47 -37.53 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.09 Total: 7.25 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.85 Total: -10.63 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.26 Total: -47.80 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.25 Total: -5.96 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.05 -8.47 -37.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233383765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.646 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds