Wall clock time and date at job start Tue Mar 31 2020 14:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38170 * 120.01753 * 2 1 4 4 C 1.38349 * 120.04074 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.95582 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.08417 * 359.95466 * 4 3 2 7 7 C 1.38124 * 120.04912 * 0.02562 * 6 4 3 8 8 C 1.50694 * 120.02479 * 180.02562 * 7 6 4 9 9 N 1.46903 * 109.47182 * 269.39676 * 8 7 6 10 10 C 1.46892 * 111.00331 * 174.74785 * 9 8 7 11 11 C 1.50696 * 109.47516 * 183.62428 * 10 9 8 12 12 H 1.08004 * 120.00018 * 5.83390 * 11 10 9 13 13 C 1.37874 * 120.00312 * 185.82907 * 11 10 9 14 14 N 1.31516 * 120.00272 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46858 * 89.99501 * 15 13 11 17 17 H 1.48493 * 109.47420 * 209.99937 * 15 13 11 18 18 H 1.48501 * 109.47001 * 330.00213 * 15 13 11 19 19 C 1.46900 * 111.00264 * 298.70549 * 9 8 7 20 20 C 1.54261 * 110.03316 * 268.74790 * 19 9 8 21 21 C 1.54962 * 104.16125 * 217.13398 * 20 19 9 22 22 C 1.54897 * 102.77667 * 37.88658 * 21 20 19 23 23 C 1.53877 * 110.03632 * 151.52578 * 19 9 8 24 24 C 1.38697 * 120.02693 * 180.02562 * 2 1 3 25 25 O 1.35922 * 120.03989 * 0.25161 * 24 2 1 26 26 H 1.09007 * 109.46661 * 269.99213 * 1 2 3 27 27 H 1.08994 * 109.47488 * 29.99645 * 1 2 3 28 28 H 1.08997 * 109.46976 * 150.00230 * 1 2 3 29 29 H 1.07996 * 119.97964 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.97588 * 180.02562 * 6 4 3 31 31 H 1.08997 * 109.47632 * 29.39865 * 8 7 6 32 32 H 1.09001 * 109.46909 * 149.40180 * 8 7 6 33 33 H 1.09000 * 109.47333 * 303.62680 * 10 9 8 34 34 H 1.09004 * 109.47106 * 63.62445 * 10 9 8 35 35 H 0.96994 * 120.00335 * 180.02562 * 14 13 11 36 36 H 1.09003 * 110.01607 * 30.13947 * 19 9 8 37 37 H 1.08999 * 110.48755 * 335.77905 * 20 19 9 38 38 H 1.09000 * 110.48627 * 98.42232 * 20 19 9 39 39 H 1.09000 * 110.72164 * 279.57014 * 21 20 19 40 40 H 1.08998 * 110.92291 * 156.29058 * 21 20 19 41 41 H 1.08993 * 110.48606 * 203.40632 * 22 21 20 42 42 H 1.09000 * 110.59795 * 80.81883 * 22 21 20 43 43 H 1.08998 * 110.03359 * 238.57096 * 23 19 9 44 44 H 1.09008 * 110.02722 * 359.95208 * 23 19 9 45 45 H 0.96694 * 114.00315 * 269.72506 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1964 0.0000 4 6 3.5817 1.1969 -0.0005 5 17 4.4479 2.7013 -0.0012 6 6 4.2758 -0.0002 -0.0001 7 6 3.5885 -1.1982 0.0003 8 6 4.3449 -2.5016 0.0013 9 7 4.5787 -2.9332 -1.3833 10 6 5.4213 -4.1357 -1.4248 11 6 5.7123 -4.4960 -2.8588 12 1 5.3919 -3.8414 -3.6558 13 6 6.3877 -5.6613 -3.1534 14 7 6.6421 -5.9755 -4.4049 15 14 6.9415 -6.7940 -1.7750 16 1 5.8704 -7.7808 -1.4849 17 1 8.1753 -7.5096 -2.1879 18 1 7.2187 -5.9919 -0.5564 19 6 3.3085 -3.1558 -2.0869 20 6 2.8708 -4.6272 -1.9345 21 6 2.2403 -4.9792 -3.3055 22 6 3.1563 -4.2312 -4.3059 23 6 3.4895 -2.9038 -3.5941 24 6 2.2010 -1.2008 -0.0005 25 8 1.5228 -2.3787 -0.0062 26 1 -0.3633 -0.0001 1.0278 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6582 2.1316 0.0004 30 1 5.3558 0.0023 -0.0001 31 1 5.3015 -2.3662 0.5060 32 1 3.7620 -3.2595 0.5246 33 1 6.3577 -3.9415 -0.9017 34 1 4.8996 -4.9617 -0.9413 35 1 7.1169 -6.7955 -4.6122 36 1 2.5398 -2.4943 -1.6875 37 1 3.7336 -5.2634 -1.7370 38 1 2.1331 -4.7252 -1.1380 39 1 1.2173 -4.6078 -3.3663 40 1 2.2706 -6.0541 -3.4835 41 1 2.6266 -4.0409 -5.2393 42 1 4.0656 -4.8021 -4.4940 43 1 2.8081 -2.1206 -3.9262 44 1 4.5197 -2.6155 -3.8033 45 1 1.3268 -2.7240 0.8754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237687546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:03 Heat of formation + Delta-G solvation = -4.461662 kcal Electronic energy + Delta-G solvation = -26654.409804 eV Core-core repulsion = 23084.405151 eV Total energy + Delta-G solvation = -3570.004652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43235 -38.42942 -37.13882 -36.03593 -34.63005 -32.93575 -32.20721 -30.26965 -27.93670 -27.80619 -27.13386 -26.74784 -24.17153 -22.04233 -21.41409 -20.84307 -19.63897 -18.54920 -17.97302 -17.13801 -16.42058 -16.17077 -15.57706 -15.05703 -14.65791 -14.19202 -14.00515 -13.74941 -13.56409 -13.26127 -13.18001 -12.87335 -12.75310 -12.57557 -12.40903 -12.10706 -11.84026 -11.65910 -11.40443 -11.06638 -11.02314 -10.91583 -10.73095 -10.41493 -10.34423 -10.19556 -10.03561 -9.99892 -9.83215 -9.37895 -9.29351 -8.78346 -8.69963 -8.48684 -8.40242 -7.24459 -5.99040 -3.94622 1.01957 1.19373 2.09782 3.28098 3.36985 3.38672 3.40210 4.11299 4.45344 4.63659 4.67707 4.96246 5.05843 5.24848 5.28415 5.32020 5.44559 5.52880 5.62543 5.64405 5.68069 5.76163 5.92224 5.97082 6.04808 6.16613 6.20829 6.36470 6.42878 6.51772 6.53897 6.60239 6.61834 6.66924 6.75582 6.84131 6.89857 6.95515 7.08005 7.32117 7.39069 7.60855 7.67498 7.72962 7.99236 8.19456 8.71754 9.14526 9.62466 11.11827 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004309 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.848821 B = 6496.308107 C = 7254.916027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C -0.106 4.106 4 C -0.039 4.039 5 Cl -0.076 7.076 6 C -0.081 4.081 7 C -0.073 4.073 8 C 0.092 3.908 9 N -0.515 5.515 10 C 0.155 3.845 11 C -0.511 4.511 12 H 0.108 0.892 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.862 3.138 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.270 1.270 19 C 0.092 3.908 20 C -0.154 4.154 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.105 4.105 24 C 0.115 3.885 25 O -0.480 6.480 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.022 0.978 34 H -0.005 1.005 35 H 0.262 0.738 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.107 0.893 43 H 0.031 0.969 44 H 0.087 0.913 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 11.568 11.253 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.125 4.125 4 C -0.066 4.066 5 Cl -0.047 7.047 6 C -0.100 4.100 7 C -0.074 4.074 8 C -0.036 4.036 9 N -0.239 5.239 10 C 0.029 3.971 11 C -0.548 4.548 12 H 0.126 0.874 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.690 3.310 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.016 4.016 20 C -0.192 4.192 21 C -0.148 4.148 22 C -0.164 4.164 23 C -0.142 4.142 24 C 0.070 3.930 25 O -0.291 6.291 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.050 0.950 44 H 0.105 0.895 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.814 11.993 10.292 19.149 hybrid contribution 0.016 -1.330 1.603 2.083 sum -10.798 10.662 11.895 19.281 Atomic orbital electron populations 1.20666 0.90217 1.03479 1.02210 1.20052 0.96755 0.91813 1.01782 1.20718 0.91809 0.98071 1.01854 1.20839 0.92262 0.87037 1.06419 1.98358 1.76984 1.32311 1.97040 1.20839 1.00781 0.89468 0.98956 1.20215 0.92637 0.95868 0.98668 1.20939 0.98139 0.91321 0.93219 1.62411 1.15551 1.36120 1.09780 1.20378 0.91368 0.86283 0.99050 1.21551 1.35183 1.06612 0.91497 0.87442 1.24839 0.95846 0.97471 0.94806 1.69852 1.41997 1.24976 1.17058 0.87073 0.78583 0.81716 0.83671 1.20544 1.21408 1.19440 1.22288 0.89850 0.94987 0.94458 1.23126 1.00783 0.99204 0.96135 1.22235 0.97222 0.99119 0.96216 1.22561 1.01115 0.97101 0.95589 1.22220 1.01834 0.96088 0.94088 1.18122 0.89305 0.85105 1.00478 1.84980 1.76040 1.35394 1.32645 0.91356 0.91464 0.90498 0.85044 0.84418 0.90556 0.94539 0.95990 0.98724 0.92834 0.90027 0.88385 0.94096 0.93822 0.93051 0.94575 0.87419 0.94977 0.89499 0.76201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 36.00 0.35 -0.61 16 2 C -0.10 -1.18 5.89 -104.48 -0.62 -1.80 16 3 C -0.11 -1.20 9.48 -39.57 -0.38 -1.57 16 4 C -0.04 -0.49 6.32 -39.49 -0.25 -0.74 16 5 Cl -0.08 -0.88 28.95 -51.86 -1.50 -2.38 16 6 C -0.08 -1.12 9.48 -39.57 -0.37 -1.49 16 7 C -0.07 -1.04 4.91 -104.48 -0.51 -1.55 16 8 C 0.09 1.49 4.97 -4.98 -0.02 1.47 16 9 N -0.52 -10.29 4.41 -228.19 -1.01 -11.30 16 10 C 0.16 3.55 3.27 -4.98 -0.02 3.53 16 11 C -0.51 -13.32 6.23 -34.44 -0.21 -13.53 16 12 H 0.11 2.98 3.51 -52.48 -0.18 2.79 16 13 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 14 N -0.90 -26.12 13.96 55.43 0.77 -25.34 16 15 Si 0.86 20.81 27.36 -169.99 -4.65 16.16 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.31 6.71 56.52 0.38 -5.93 16 19 C 0.09 1.79 2.43 -66.60 -0.16 1.63 16 20 C -0.15 -3.02 5.75 -25.04 -0.14 -3.17 16 21 C -0.11 -2.12 6.91 -24.69 -0.17 -2.29 16 22 C -0.13 -2.66 6.18 -25.07 -0.15 -2.81 16 23 C -0.10 -2.17 5.64 -25.61 -0.14 -2.32 16 24 C 0.12 1.48 5.37 -39.22 -0.21 1.27 16 25 O -0.48 -5.76 9.41 -19.49 -0.18 -5.95 16 26 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 32 H 0.04 0.57 7.55 -51.93 -0.39 0.18 16 33 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 34 H 0.00 -0.10 4.89 -51.93 -0.25 -0.36 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.08 1.50 3.57 -51.93 -0.19 1.32 16 37 H 0.10 2.20 4.15 -51.93 -0.22 1.98 16 38 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 2.69 5.97 -51.93 -0.31 2.38 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 2.03 5.78 -51.92 -0.30 1.73 16 45 H 0.38 2.93 9.06 45.56 0.41 3.34 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -28.92 351.90 -9.96 -38.88 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.58 Total: 6.76 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -3.11 Total: -22.14 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.23 Total: -36.64 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.18 Total: -5.95 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.65 Total: 16.16 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.92 -9.96 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237687546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.418 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds