Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38170 * 120.01753 * 2 1 4 4 C 1.38349 * 120.04074 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 119.95582 * 179.97438 * 4 3 2 6 6 C 1.38380 * 120.08417 * 359.95466 * 4 3 2 7 7 C 1.38124 * 120.04912 * 0.02562 * 6 4 3 8 8 C 1.50694 * 120.02479 * 180.02562 * 7 6 4 9 9 N 1.46903 * 109.47182 * 269.39676 * 8 7 6 10 10 C 1.46892 * 111.00331 * 174.74785 * 9 8 7 11 11 C 1.50696 * 109.47516 * 183.62428 * 10 9 8 12 12 H 1.08004 * 120.00018 * 5.83390 * 11 10 9 13 13 C 1.37874 * 120.00312 * 185.82907 * 11 10 9 14 14 N 1.31516 * 120.00272 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00129 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46858 * 89.99501 * 15 13 11 17 17 H 1.48493 * 109.47420 * 209.99937 * 15 13 11 18 18 H 1.48501 * 109.47001 * 330.00213 * 15 13 11 19 19 C 1.46900 * 111.00264 * 298.70549 * 9 8 7 20 20 C 1.54261 * 110.03316 * 268.74790 * 19 9 8 21 21 C 1.54962 * 104.16125 * 217.13398 * 20 19 9 22 22 C 1.54897 * 102.77667 * 37.88658 * 21 20 19 23 23 C 1.53877 * 110.03632 * 151.52578 * 19 9 8 24 24 C 1.38697 * 120.02693 * 180.02562 * 2 1 3 25 25 O 1.35922 * 120.03989 * 0.25161 * 24 2 1 26 26 H 1.09007 * 109.46661 * 269.99213 * 1 2 3 27 27 H 1.08994 * 109.47488 * 29.99645 * 1 2 3 28 28 H 1.08997 * 109.46976 * 150.00230 * 1 2 3 29 29 H 1.07996 * 119.97964 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.97588 * 180.02562 * 6 4 3 31 31 H 1.08997 * 109.47632 * 29.39865 * 8 7 6 32 32 H 1.09001 * 109.46909 * 149.40180 * 8 7 6 33 33 H 1.09000 * 109.47333 * 303.62680 * 10 9 8 34 34 H 1.09004 * 109.47106 * 63.62445 * 10 9 8 35 35 H 0.96994 * 120.00335 * 180.02562 * 14 13 11 36 36 H 1.09003 * 110.01607 * 30.13947 * 19 9 8 37 37 H 1.08999 * 110.48755 * 335.77905 * 20 19 9 38 38 H 1.09000 * 110.48627 * 98.42232 * 20 19 9 39 39 H 1.09000 * 110.72164 * 279.57014 * 21 20 19 40 40 H 1.08998 * 110.92291 * 156.29058 * 21 20 19 41 41 H 1.08993 * 110.48606 * 203.40632 * 22 21 20 42 42 H 1.09000 * 110.59795 * 80.81883 * 22 21 20 43 43 H 1.08998 * 110.03359 * 238.57096 * 23 19 9 44 44 H 1.09008 * 110.02722 * 359.95208 * 23 19 9 45 45 H 0.96694 * 114.00315 * 269.72506 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1964 0.0000 4 6 3.5817 1.1969 -0.0005 5 17 4.4479 2.7013 -0.0012 6 6 4.2758 -0.0002 -0.0001 7 6 3.5885 -1.1982 0.0003 8 6 4.3449 -2.5016 0.0013 9 7 4.5787 -2.9332 -1.3833 10 6 5.4213 -4.1357 -1.4248 11 6 5.7123 -4.4960 -2.8588 12 1 5.3919 -3.8414 -3.6558 13 6 6.3877 -5.6613 -3.1534 14 7 6.6421 -5.9755 -4.4049 15 14 6.9415 -6.7940 -1.7750 16 1 5.8704 -7.7808 -1.4849 17 1 8.1753 -7.5096 -2.1879 18 1 7.2187 -5.9919 -0.5564 19 6 3.3085 -3.1558 -2.0869 20 6 2.8708 -4.6272 -1.9345 21 6 2.2403 -4.9792 -3.3055 22 6 3.1563 -4.2312 -4.3059 23 6 3.4895 -2.9038 -3.5941 24 6 2.2010 -1.2008 -0.0005 25 8 1.5228 -2.3787 -0.0062 26 1 -0.3633 -0.0001 1.0278 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6582 2.1316 0.0004 30 1 5.3558 0.0023 -0.0001 31 1 5.3015 -2.3662 0.5060 32 1 3.7620 -3.2595 0.5246 33 1 6.3577 -3.9415 -0.9017 34 1 4.8996 -4.9617 -0.9413 35 1 7.1169 -6.7955 -4.6122 36 1 2.5398 -2.4943 -1.6875 37 1 3.7336 -5.2634 -1.7370 38 1 2.1331 -4.7252 -1.1380 39 1 1.2173 -4.6078 -3.3663 40 1 2.2706 -6.0541 -3.4835 41 1 2.6266 -4.0409 -5.2393 42 1 4.0656 -4.8021 -4.4940 43 1 2.8081 -2.1206 -3.9262 44 1 4.5197 -2.6155 -3.8033 45 1 1.3268 -2.7240 0.8754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237687546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = -21.747062 kcal Electronic energy + Delta-G solvation = -26655.159355 eV Core-core repulsion = 23084.405151 eV Total energy + Delta-G solvation = -3570.754203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49569 -39.90899 -38.06362 -36.96161 -36.03158 -34.67507 -33.59293 -31.40636 -29.61763 -29.49831 -28.36204 -27.75189 -25.64994 -23.39404 -22.82598 -21.92882 -21.27999 -19.88631 -19.21355 -18.96925 -17.41914 -17.31678 -16.78824 -16.63962 -16.03732 -15.96779 -15.30816 -15.10941 -14.95301 -14.42624 -14.37529 -14.09249 -13.90787 -13.66171 -13.55377 -13.49689 -13.17383 -12.95748 -12.77073 -12.73689 -12.35320 -12.14627 -11.94828 -11.93703 -11.86777 -11.78162 -11.66141 -11.57296 -11.26172 -11.10016 -10.97477 -10.59562 -10.57157 -9.74358 -9.35217 -8.81100 -8.09497 -6.07695 0.07682 0.23802 1.16602 1.34622 1.38814 1.45803 2.43215 2.44177 3.21258 3.23586 3.43738 3.68866 3.78052 4.03242 4.08121 4.15152 4.28977 4.34601 4.36501 4.58396 4.64432 4.71990 4.76932 4.84659 4.85601 4.87297 4.92470 4.98443 5.03585 5.10866 5.17217 5.19676 5.22320 5.26328 5.29504 5.35898 5.41471 5.48427 5.60753 5.69974 5.73962 5.78940 5.93214 6.22918 6.56170 6.82651 6.85515 7.04508 7.52643 9.03694 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004309 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.848821 B = 6496.308107 C = 7254.916027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.100 4.100 4 C -0.047 4.047 5 Cl -0.072 7.072 6 C -0.094 4.094 7 C -0.091 4.091 8 C 0.095 3.905 9 N -0.529 5.529 10 C 0.164 3.836 11 C -0.499 4.499 12 H 0.085 0.915 13 C 0.019 3.981 14 N -0.943 5.943 15 Si 0.916 3.084 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.255 1.255 19 C 0.100 3.900 20 C -0.150 4.150 21 C -0.104 4.104 22 C -0.126 4.126 23 C -0.103 4.103 24 C 0.116 3.884 25 O -0.490 6.490 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.015 0.985 34 H 0.000 1.000 35 H 0.259 0.741 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 12.633 13.358 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.074 4.074 5 Cl -0.043 7.043 6 C -0.113 4.113 7 C -0.092 4.092 8 C -0.033 4.033 9 N -0.252 5.252 10 C 0.037 3.963 11 C -0.537 4.537 12 H 0.103 0.897 13 C -0.178 4.178 14 N -0.586 5.586 15 Si 0.743 3.257 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.179 1.179 19 C -0.008 4.008 20 C -0.189 4.189 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.141 4.141 24 C 0.071 3.929 25 O -0.303 6.303 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.172 0.828 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -13.352 13.069 12.436 22.443 hybrid contribution 0.740 -1.540 0.927 1.944 sum -12.611 11.529 13.363 21.691 Atomic orbital electron populations 1.20717 0.88050 1.03854 1.03615 1.20344 0.98237 0.91106 1.00548 1.21029 0.91323 0.99185 1.00386 1.20919 0.92915 0.86845 1.06684 1.98359 1.77066 1.31813 1.97032 1.20848 1.00663 0.90080 0.99711 1.20065 0.93383 0.94862 1.00920 1.20917 0.98872 0.92658 0.90839 1.62247 1.15863 1.34476 1.12655 1.20147 0.91821 0.87743 0.96589 1.21776 1.33435 1.05654 0.92843 0.89745 1.25500 0.96521 0.99201 0.96568 1.70001 1.43802 1.25637 1.19131 0.86178 0.77934 0.80065 0.81565 1.19976 1.21880 1.17946 1.22258 0.89993 0.95295 0.93285 1.23035 1.00241 0.98518 0.97060 1.22223 0.98111 0.98664 0.95240 1.22427 0.99810 0.97035 0.97040 1.22175 1.00058 0.96220 0.95607 1.18167 0.88718 0.85980 1.00052 1.84879 1.75702 1.35159 1.34588 0.89354 0.90236 0.90963 0.82766 0.85144 0.90546 0.93489 0.96697 0.98301 0.93197 0.88178 0.91390 0.91588 0.91025 0.93561 0.93246 0.91921 0.93381 0.92918 0.73812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.79 71.23 0.70 -0.73 16 2 C -0.10 -1.98 5.89 -19.77 -0.12 -2.09 16 3 C -0.10 -1.98 9.48 22.28 0.21 -1.77 16 4 C -0.05 -1.10 6.32 22.33 0.14 -0.96 16 5 Cl -0.07 -1.56 28.95 -2.72 -0.08 -1.64 16 6 C -0.09 -2.48 9.48 22.28 0.21 -2.27 16 7 C -0.09 -2.46 4.91 -19.77 -0.10 -2.56 16 8 C 0.09 2.95 4.97 85.55 0.43 3.37 16 9 N -0.53 -20.90 4.41 -875.85 -3.86 -24.76 16 10 C 0.16 7.49 3.27 85.56 0.28 7.77 16 11 C -0.50 -26.79 6.23 25.60 0.16 -26.63 16 12 H 0.08 4.91 3.51 -2.91 -0.01 4.90 16 13 C 0.02 1.05 5.46 84.65 0.46 1.51 16 14 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 15 Si 0.92 43.47 27.36 68.60 1.88 45.35 16 16 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.26 -11.41 6.71 99.48 0.67 -10.74 16 19 C 0.10 3.74 2.43 45.64 0.11 3.85 16 20 C -0.15 -5.65 5.75 31.69 0.18 -5.46 16 21 C -0.10 -3.88 6.91 31.91 0.22 -3.66 16 22 C -0.13 -5.33 6.18 31.67 0.20 -5.13 16 23 C -0.10 -4.27 5.64 31.32 0.18 -4.09 16 24 C 0.12 2.66 5.37 22.50 0.12 2.78 16 25 O -0.49 -10.02 9.41 -92.67 -0.87 -10.89 16 26 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.07 1.08 7.53 -2.39 -0.02 1.07 16 29 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 32 H 0.05 1.36 7.55 -2.39 -0.02 1.34 16 33 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 34 H 0.00 -0.01 4.89 -2.38 -0.01 -0.03 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.10 3.43 3.57 -2.39 -0.01 3.42 16 37 H 0.07 3.00 4.15 -2.39 -0.01 2.99 16 38 H 0.07 2.13 7.95 -2.39 -0.02 2.11 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 3.27 5.97 -2.39 -0.01 3.25 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 2.55 5.78 -2.38 -0.01 2.54 16 45 H 0.40 4.64 9.06 -74.06 -0.67 3.97 16 Total: -1.00 -63.91 351.90 1.06 -62.86 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.32 Total: 21.93 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 3.38 Total: -36.06 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.56 Total: -81.54 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.87 Total: -10.89 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.35 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -63.91 1.06 -62.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237687546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds