Wall clock time and date at job start Tue Mar 31 2020 13:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30652 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48503 * 109.47282 * 265.84968 * 3 2 1 5 5 H 1.48499 * 109.47280 * 25.84783 * 3 2 1 6 6 H 1.48503 * 109.47246 * 145.84879 * 3 2 1 7 7 C 1.40218 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00270 * 350.43847 * 7 2 1 9 9 C 1.40793 * 119.99900 * 170.43413 * 7 2 1 10 10 N 1.33989 * 120.28721 * 339.53335 * 9 7 2 11 11 C 1.31569 * 119.89645 * 179.97438 * 10 9 7 12 12 C 1.39263 * 120.50309 * 0.02562 * 11 10 9 13 13 N 1.31949 * 120.58926 * 359.73702 * 12 11 10 14 14 C 1.32884 * 120.08083 * 0.51581 * 13 12 11 15 15 C 1.47754 * 120.25047 * 179.76790 * 14 13 12 16 16 C 1.39793 * 120.00821 * 321.62859 * 15 14 13 17 17 C 1.37620 * 119.99431 * 179.97438 * 16 15 14 18 18 C 1.39729 * 120.00557 * 0.02562 * 17 16 15 19 19 C 1.47785 * 119.99423 * 180.02562 * 18 17 16 20 20 O 1.21568 * 119.99670 * 6.96428 * 19 18 17 21 21 N 1.34770 * 120.00386 * 186.96320 * 19 18 17 22 22 C 1.47022 * 125.65006 * 354.60394 * 21 19 18 23 23 C 1.54317 * 107.40602 * 178.97910 * 22 21 19 24 24 C 1.55154 * 102.94278 * 337.72915 * 23 22 21 25 25 C 1.47744 * 125.82264 * 174.50090 * 21 19 18 26 26 C 1.39743 * 120.01683 * 0.26718 * 18 17 16 27 27 C 1.37620 * 120.00343 * 359.45306 * 26 18 17 28 28 H 0.97002 * 120.00336 * 359.97438 * 1 2 3 29 29 H 1.08002 * 119.74730 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.70318 * 180.02562 * 12 11 10 31 31 H 1.07999 * 120.00212 * 359.97438 * 16 15 14 32 32 H 1.07995 * 119.99376 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.88168 * 59.48468 * 22 21 19 34 34 H 1.09007 * 109.88117 * 298.47668 * 22 21 19 35 35 H 1.09006 * 110.71928 * 96.09428 * 23 22 21 36 36 H 1.08996 * 110.72405 * 219.36697 * 23 22 21 37 37 H 1.09003 * 111.00629 * 153.57066 * 24 23 22 38 38 H 1.08994 * 111.00906 * 277.42513 * 24 23 22 39 39 H 1.08994 * 110.28926 * 85.25847 * 25 21 19 40 40 H 1.09004 * 110.46838 * 323.03160 * 25 21 19 41 41 H 1.07989 * 119.99466 * 179.70913 * 26 18 17 42 42 H 1.08002 * 120.00200 * 180.26486 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.5758 1.9958 -1.3964 5 1 1.3968 2.6764 0.6104 6 1 3.4914 1.4671 0.7860 7 6 2.0076 -1.2143 -0.0005 8 1 1.4789 -2.1432 0.1544 9 6 3.4008 -1.2227 -0.2032 10 7 4.0048 -0.1799 -0.7890 11 6 5.3073 -0.1957 -0.9741 12 6 6.0661 -1.2898 -0.5660 13 7 5.4922 -2.3250 0.0171 14 6 4.1776 -2.3359 0.2110 15 6 3.5304 -3.4955 0.8588 16 6 3.9720 -4.7912 0.5755 17 6 3.3693 -5.8709 1.1795 18 6 2.3156 -5.6722 2.0754 19 6 1.6690 -6.8319 2.7243 20 8 2.1323 -7.9463 2.5787 21 7 0.5656 -6.6540 3.4775 22 6 -0.0328 -5.3577 3.8280 23 6 -1.2891 -5.6437 4.6772 24 6 -1.6502 -7.1004 4.2839 25 6 -0.2470 -7.7265 4.0877 26 6 1.8698 -4.3775 2.3542 27 6 2.4759 -3.2970 1.7550 28 1 -0.4851 0.8400 0.0004 29 1 5.7917 0.6463 -1.4461 30 1 7.1345 -1.2889 -0.7239 31 1 4.7861 -4.9448 -0.1173 32 1 3.7108 -6.8719 0.9609 33 1 -0.3126 -4.8213 2.9212 34 1 0.6776 -4.7653 4.4047 35 1 -1.0591 -5.5771 5.7407 36 1 -2.0970 -4.9614 4.4129 37 1 -2.1917 -7.5994 5.0876 38 1 -2.2220 -7.1244 3.3562 39 1 0.1752 -8.0203 5.0487 40 1 -0.3052 -8.5869 3.4209 41 1 1.0524 -4.2247 3.0432 42 1 2.1342 -2.2961 1.9738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239893327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:43 Heat of formation + Delta-G solvation = 45.804294 kcal Electronic energy + Delta-G solvation = -26453.242750 eV Core-core repulsion = 22784.310299 eV Total energy + Delta-G solvation = -3668.932451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.35968 -39.59366 -37.93226 -37.14437 -34.36952 -33.16696 -32.28141 -31.64199 -30.60344 -29.46257 -28.74793 -26.49720 -24.97764 -23.34619 -22.58152 -21.87369 -21.07488 -20.96641 -19.71231 -18.05750 -17.13679 -16.62221 -16.43667 -16.31329 -15.60207 -15.44437 -14.44495 -14.39335 -14.12276 -13.96960 -13.72449 -13.55763 -13.33723 -13.15375 -12.99119 -12.80910 -12.60137 -12.33607 -12.03413 -11.80245 -11.64699 -11.44385 -11.37956 -11.14720 -11.00824 -10.95645 -10.55611 -10.19681 -10.00506 -9.71724 -9.62895 -9.43730 -8.76439 -8.66785 -8.38341 -7.92150 -7.63764 -7.24779 -5.01427 1.10583 1.96746 2.10279 2.46040 2.99469 3.16901 3.23618 3.26039 3.33682 4.05339 4.23823 4.30854 4.38753 4.40341 4.73220 4.90615 5.07972 5.09444 5.16856 5.20755 5.39451 5.45223 5.46872 5.54055 5.55650 5.64314 5.66366 5.76730 5.78792 5.94575 5.94989 6.02153 6.05066 6.18809 6.28031 6.40198 6.53137 6.60377 6.80354 6.83029 6.87894 7.22816 7.31967 7.44517 7.54315 7.76637 8.05210 8.15681 8.30989 8.71796 9.17107 9.63340 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.003924 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.248022 B = 7133.266954 C = 8772.592112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.082 3.918 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.317 1.317 6 H -0.266 1.266 7 C -0.385 4.385 8 H 0.116 0.884 9 C 0.206 3.794 10 N -0.532 5.532 11 C 0.110 3.890 12 C -0.107 4.107 13 N -0.401 5.401 14 C -0.012 4.012 15 C 0.047 3.953 16 C -0.118 4.118 17 C -0.064 4.064 18 C -0.159 4.159 19 C 0.581 3.419 20 O -0.548 6.548 21 N -0.619 5.619 22 C 0.087 3.913 23 C -0.136 4.136 24 C -0.134 4.134 25 C 0.107 3.893 26 C -0.127 4.127 27 C -0.108 4.108 28 H 0.295 0.705 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -5.624 7.644 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.144 4.144 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.248 1.248 6 H -0.192 1.192 7 C -0.415 4.415 8 H 0.133 0.867 9 C 0.083 3.917 10 N -0.253 5.253 11 C -0.058 4.058 12 C -0.268 4.268 13 N -0.113 5.113 14 C -0.159 4.159 15 C 0.045 3.955 16 C -0.137 4.137 17 C -0.083 4.083 18 C -0.162 4.162 19 C 0.373 3.627 20 O -0.427 6.427 21 N -0.353 5.353 22 C -0.035 4.035 23 C -0.174 4.174 24 C -0.172 4.172 25 C -0.016 4.016 26 C -0.144 4.144 27 C -0.127 4.127 28 H 0.106 0.894 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.170 0.830 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.034 -6.179 7.511 10.530 hybrid contribution 0.402 0.858 -0.260 0.983 sum -3.632 -5.321 7.251 9.700 Atomic orbital electron populations 1.69557 1.08573 1.31781 1.29638 1.26461 0.94987 1.03500 0.89421 0.84842 0.77494 0.75892 0.80202 1.19285 1.24788 1.19195 1.19781 0.89298 0.96411 1.36007 0.86681 1.19211 0.94533 0.87923 0.90071 1.67860 1.10171 1.28056 1.19212 1.23284 0.90982 0.97262 0.94270 1.22574 0.99831 0.93739 1.10640 1.67727 1.10744 1.25217 1.07574 1.20053 0.89619 0.97163 1.09093 1.18574 0.93080 0.91294 0.92568 1.21187 1.00386 0.91308 1.00861 1.20991 0.93797 0.99077 0.94418 1.19627 1.00773 0.92581 1.03232 1.18154 0.78478 0.88835 0.77198 1.90726 1.63375 1.25975 1.62646 1.48392 1.27313 1.07863 1.51762 1.22613 0.94954 0.86244 0.99710 1.22735 0.97279 0.97166 1.00177 1.22794 0.96135 0.95813 1.02476 1.22246 0.89922 0.91184 0.98207 1.22500 1.00327 0.91504 1.00117 1.21602 0.95559 1.00024 0.95519 0.89428 0.84336 0.84420 0.85670 0.85564 0.89543 0.90163 0.90476 0.89600 0.89839 0.90433 0.91575 0.90492 0.82955 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.21 13.92 55.56 0.77 -17.44 16 2 C 0.08 1.96 5.52 -17.31 -0.10 1.86 16 3 Si 0.98 21.63 25.49 -169.99 -4.33 17.30 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.32 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.14 6.75 56.52 0.38 -5.76 16 7 C -0.39 -9.35 7.42 -37.87 -0.28 -9.63 16 8 H 0.12 2.82 5.85 -52.49 -0.31 2.51 16 9 C 0.21 4.99 6.07 -84.55 -0.51 4.48 16 10 N -0.53 -12.62 5.65 -10.71 -0.06 -12.68 16 11 C 0.11 2.26 11.22 -17.28 -0.19 2.07 16 12 C -0.11 -2.18 11.22 -17.12 -0.19 -2.37 16 13 N -0.40 -8.99 10.20 -8.97 -0.09 -9.08 16 14 C -0.01 -0.29 6.48 -82.11 -0.53 -0.82 16 15 C 0.05 0.97 5.43 -104.84 -0.57 0.41 16 16 C -0.12 -2.27 9.60 -39.23 -0.38 -2.65 16 17 C -0.06 -1.15 9.57 -39.25 -0.38 -1.53 16 18 C -0.16 -2.78 5.88 -104.87 -0.62 -3.39 16 19 C 0.58 9.92 7.81 -12.36 -0.10 9.83 16 20 O -0.55 -10.82 16.68 5.31 0.09 -10.73 16 21 N -0.62 -8.35 3.34 -176.83 -0.59 -8.94 16 22 C 0.09 0.93 4.86 -3.07 -0.01 0.92 16 23 C -0.14 -1.05 6.95 -24.90 -0.17 -1.23 16 24 C -0.13 -1.04 7.09 -24.58 -0.17 -1.22 16 25 C 0.11 1.15 6.91 -2.35 -0.02 1.13 16 26 C -0.13 -2.11 8.58 -39.25 -0.34 -2.44 16 27 C -0.11 -2.08 7.58 -39.22 -0.30 -2.37 16 28 H 0.30 6.29 8.29 -40.82 -0.34 5.96 16 29 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.14 2.32 8.06 -52.48 -0.42 1.89 16 31 H 0.13 2.33 8.03 -52.49 -0.42 1.91 16 32 H 0.13 2.15 7.65 -52.49 -0.40 1.75 16 33 H 0.09 0.98 6.57 -51.93 -0.34 0.64 16 34 H 0.08 0.83 6.88 -51.93 -0.36 0.47 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.15 2.07 2.71 -59.51 -0.16 1.91 16 42 H 0.15 2.89 6.17 -52.49 -0.32 2.57 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -29.53 341.52 -8.77 -38.30 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.85 Total: 5.08 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.86 Total: -6.95 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.03 Total: -48.14 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.33 Total: 17.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.53 -8.77 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239893327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.103 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds