Wall clock time and date at job start Tue Mar 31 2020 13:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86805 * 120.00040 * 2 1 4 4 H 1.48497 * 109.46690 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47279 * 119.99833 * 3 2 1 6 6 H 1.48503 * 109.47189 * 240.00025 * 3 2 1 7 7 C 1.40059 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99948 * 0.09024 * 7 2 1 9 9 C 1.41342 * 119.99994 * 180.02562 * 7 2 1 10 10 C 1.40894 * 120.14965 * 180.85611 * 9 7 2 11 11 N 1.31845 * 119.96429 * 179.70764 * 10 9 7 12 12 C 1.32222 * 120.28064 * 0.57260 * 11 10 9 13 13 C 1.39985 * 120.29596 * 359.70572 * 12 11 10 14 14 C 1.48264 * 119.98462 * 179.97438 * 13 12 11 15 15 C 1.39508 * 119.97739 * 184.74641 * 14 13 12 16 16 C 1.37711 * 120.01404 * 179.71809 * 15 14 13 17 17 C 1.39674 * 119.97645 * 0.57769 * 16 15 14 18 18 C 1.47799 * 120.01662 * 179.67668 * 17 16 15 19 19 O 1.21563 * 119.99789 * 352.48232 * 18 17 16 20 20 N 1.34775 * 120.00364 * 172.48351 * 18 17 16 21 21 C 1.47023 * 125.64309 * 5.16691 * 20 18 17 22 22 C 1.54320 * 107.27553 * 180.96653 * 21 20 18 23 23 C 1.55156 * 102.86113 * 22.52830 * 22 21 20 24 24 C 1.47417 * 125.65259 * 185.47281 * 20 18 17 25 25 C 1.39674 * 119.96427 * 359.69849 * 17 16 15 26 26 C 1.37697 * 119.97994 * 0.02562 * 25 17 16 27 27 N 1.32575 * 120.03111 * 0.02562 * 13 12 11 28 28 H 0.96996 * 119.99925 * 174.99410 * 1 2 3 29 29 H 1.08002 * 120.01645 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.85249 * 179.72808 * 12 11 10 31 31 H 1.07998 * 119.99260 * 359.97438 * 15 14 13 32 32 H 1.08000 * 120.00580 * 180.27134 * 16 15 14 33 33 H 1.08997 * 109.88483 * 300.51089 * 21 20 18 34 34 H 1.09002 * 109.88660 * 61.67748 * 21 20 18 35 35 H 1.08993 * 110.92316 * 264.11438 * 22 21 20 36 36 H 1.08994 * 110.58968 * 140.78595 * 22 21 20 37 37 H 1.09004 * 111.00536 * 206.23276 * 23 22 21 38 38 H 1.08995 * 111.00889 * 82.37277 * 23 22 21 39 39 H 1.09002 * 110.37025 * 274.67630 * 24 20 18 40 40 H 1.08997 * 110.36565 * 36.88969 * 24 20 18 41 41 H 1.08003 * 120.00887 * 180.02562 * 25 17 16 42 42 H 1.08002 * 119.99095 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7464 -0.0006 5 1 3.0950 1.6965 1.2125 6 1 3.0950 1.6964 -1.2125 7 6 2.0076 -1.2129 0.0005 8 1 1.4676 -2.1482 -0.0005 9 6 3.4210 -1.2129 0.0011 10 6 4.1287 -2.4311 -0.0166 11 7 5.4471 -2.4267 -0.0218 12 6 6.1101 -1.2829 0.0008 13 6 5.4185 -0.0661 0.0244 14 6 6.1689 1.2123 0.0503 15 6 5.4830 2.4209 0.1737 16 6 6.1796 3.6084 0.2036 17 6 7.5724 3.6033 0.0983 18 6 8.3204 4.8778 0.1232 19 8 7.7209 5.9350 0.0974 20 7 9.6671 4.8679 0.1744 21 6 10.5185 3.6714 0.1025 22 6 11.9828 4.1428 0.2254 23 6 11.8452 5.5156 0.9352 24 6 10.5302 6.0543 0.3183 25 6 8.2578 2.3932 -0.0310 26 6 7.5600 1.2063 -0.0551 27 7 4.0928 -0.0563 0.0246 28 1 -0.4850 -0.8368 -0.0733 29 1 3.5914 -3.3679 -0.0301 30 1 7.1901 -1.2875 0.0008 31 1 4.4057 2.4248 0.2499 32 1 5.6488 4.5436 0.3036 33 1 10.2754 2.9937 0.9207 34 1 10.3719 3.1690 -0.8537 35 1 12.4375 4.2610 -0.7580 36 1 12.5589 3.4485 0.8370 37 1 12.6855 6.1665 0.6933 38 1 11.7480 5.3900 2.0135 39 1 10.7242 6.5028 -0.6561 40 1 10.0669 6.7819 0.9845 41 1 9.3347 2.3884 -0.1121 42 1 8.0898 0.2705 -0.1547 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239897357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:46 Heat of formation + Delta-G solvation = 44.970028 kcal Electronic energy + Delta-G solvation = -26118.314439 eV Core-core repulsion = 22449.345812 eV Total energy + Delta-G solvation = -3668.968627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.67050 -39.69164 -38.27595 -37.42752 -34.39090 -33.41536 -32.34926 -31.79291 -30.94992 -29.74955 -28.89233 -26.19074 -25.21386 -23.56665 -23.13071 -21.93696 -21.29626 -20.84567 -20.01194 -18.64978 -17.60647 -16.89329 -16.69702 -16.04055 -15.89005 -15.72253 -14.72802 -14.56957 -14.34554 -14.01311 -13.81427 -13.75702 -13.69861 -13.45424 -13.08682 -13.03004 -12.81410 -12.54023 -12.30517 -11.98182 -11.64401 -11.49263 -11.46157 -11.22117 -11.19202 -11.10588 -10.50865 -10.08825 -9.99183 -9.85018 -9.56324 -9.23581 -9.04854 -8.91360 -8.79495 -7.90947 -7.81942 -7.37019 -5.09159 0.65637 1.53639 2.13041 2.42998 2.73057 2.99546 3.38445 3.48508 3.79857 3.97799 4.06868 4.12673 4.16579 4.47045 4.50101 4.57928 4.71672 4.83447 4.93983 5.02183 5.05759 5.15515 5.28890 5.32021 5.40679 5.42479 5.46176 5.51633 5.55113 5.60412 5.73106 5.80810 5.90619 5.93662 6.03716 6.20251 6.33100 6.43920 6.51573 6.62435 6.83996 6.99533 7.11666 7.17487 7.26867 7.72431 7.88362 8.03836 8.25590 8.66116 9.13623 9.72377 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.003305 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.108570 B = 8471.183923 C = 9784.833939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.040 3.960 3 Si 1.144 2.856 4 H -0.323 1.323 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.446 4.446 8 H 0.091 0.909 9 C 0.200 3.800 10 C -0.034 4.034 11 N -0.419 5.419 12 C -0.101 4.101 13 C 0.160 3.840 14 C 0.003 3.997 15 C -0.108 4.108 16 C -0.062 4.062 17 C -0.141 4.141 18 C 0.579 3.421 19 O -0.538 6.538 20 N -0.618 5.618 21 C 0.087 3.913 22 C -0.136 4.136 23 C -0.134 4.134 24 C 0.106 3.894 25 C -0.128 4.128 26 C -0.111 4.111 27 N -0.537 5.537 28 H 0.288 0.712 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.159 0.841 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.809 7.805 0.703 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.184 4.184 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.478 4.478 8 H 0.109 0.891 9 C 0.075 3.925 10 C -0.207 4.207 11 N -0.130 5.130 12 C -0.257 4.257 13 C 0.017 3.983 14 C 0.001 3.999 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.144 4.144 18 C 0.370 3.630 19 O -0.415 6.415 20 N -0.353 5.353 21 C -0.035 4.035 22 C -0.174 4.174 23 C -0.172 4.172 24 C -0.016 4.016 25 C -0.145 4.145 26 C -0.130 4.130 27 N -0.260 5.260 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.175 0.825 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 20.090 9.877 0.738 22.399 hybrid contribution -0.068 -2.070 -0.086 2.073 sum 20.022 7.807 0.652 21.500 Atomic orbital electron populations 1.70634 1.08126 1.33230 1.28584 1.27893 0.95361 1.06332 0.88789 0.82269 0.70437 0.69902 0.79454 1.25599 1.20790 1.20953 1.20862 0.89859 0.96773 1.40346 0.89072 1.19409 0.94895 0.88020 0.90187 1.23208 0.89905 0.97979 1.09568 1.67723 1.09441 1.29409 1.06422 1.22460 0.99116 0.87761 1.16387 1.20274 0.90622 0.92369 0.95039 1.18960 0.92728 0.91977 0.96229 1.21828 1.01749 0.91095 0.97996 1.21215 0.92396 0.98724 0.95796 1.19757 0.94226 0.92418 1.08040 1.18075 0.79977 0.89208 0.75759 1.90768 1.67703 1.32707 1.50353 1.48325 1.04905 1.08470 1.73608 1.22601 0.90132 0.88606 1.02170 1.22735 0.95363 0.97437 1.01830 1.22804 0.97038 0.96773 1.00623 1.22228 0.89876 0.88571 1.00971 1.22497 1.02041 0.91416 0.98591 1.21202 0.92904 0.98398 1.00526 1.67149 1.06650 1.28346 1.23866 0.90059 0.84049 0.84368 0.84283 0.84604 0.89859 0.90075 0.90279 0.89662 0.89679 0.90428 0.91364 0.90299 0.82462 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 13.65 55.55 0.76 -19.57 16 2 C 0.04 1.03 5.52 -17.34 -0.10 0.93 16 3 Si 1.14 27.38 22.30 -169.99 -3.79 23.59 16 4 H -0.32 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.28 -6.58 6.19 56.52 0.35 -6.23 16 6 H -0.28 -6.74 6.90 56.52 0.39 -6.35 16 7 C -0.45 -11.43 9.60 -37.72 -0.36 -11.79 16 8 H 0.09 2.27 8.05 -52.49 -0.42 1.84 16 9 C 0.20 5.02 6.42 -84.84 -0.55 4.48 16 10 C -0.03 -0.79 10.98 -16.54 -0.18 -0.97 16 11 N -0.42 -9.43 10.47 -12.05 -0.13 -9.56 16 12 C -0.10 -2.11 10.61 -16.73 -0.18 -2.28 16 13 C 0.16 3.52 6.73 -82.77 -0.56 2.96 16 14 C 0.00 0.05 5.88 -104.83 -0.62 -0.56 16 15 C -0.11 -2.08 9.53 -39.30 -0.37 -2.46 16 16 C -0.06 -1.06 9.58 -39.24 -0.38 -1.43 16 17 C -0.14 -2.12 5.88 -104.92 -0.62 -2.73 16 18 C 0.58 8.52 7.81 -12.35 -0.10 8.43 16 19 O -0.54 -9.63 16.66 5.31 0.09 -9.54 16 20 N -0.62 -6.71 3.33 -176.28 -0.59 -7.30 16 21 C 0.09 0.64 4.86 -3.07 -0.01 0.62 16 22 C -0.14 -0.66 6.95 -24.90 -0.17 -0.83 16 23 C -0.13 -0.72 7.08 -24.58 -0.17 -0.90 16 24 C 0.11 0.91 6.89 -2.53 -0.02 0.89 16 25 C -0.13 -1.62 8.58 -39.24 -0.34 -1.96 16 26 C -0.11 -1.62 9.40 -39.31 -0.37 -1.99 16 27 N -0.54 -13.29 4.31 -7.51 -0.03 -13.32 16 28 H 0.29 7.03 8.72 -40.82 -0.36 6.67 16 29 H 0.14 2.96 8.06 -52.49 -0.42 2.54 16 30 H 0.14 2.36 6.20 -52.49 -0.33 2.03 16 31 H 0.14 2.92 2.52 -52.49 -0.13 2.79 16 32 H 0.14 2.20 7.66 -52.49 -0.40 1.79 16 33 H 0.08 0.58 6.64 -51.93 -0.34 0.23 16 34 H 0.08 0.54 6.82 -51.93 -0.35 0.19 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 41 H 0.16 1.41 2.74 -58.48 -0.16 1.25 16 42 H 0.13 1.64 6.20 -52.49 -0.33 1.31 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -30.92 335.61 -8.35 -39.27 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.64 Total: 0.98 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -5.08 Total: -9.61 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.01 Total: -49.75 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -3.79 Total: 23.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.92 -8.35 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239897357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.243 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds