Wall clock time and date at job start Tue Mar 31 2020 14:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86808 * 119.99630 * 2 1 4 4 H 1.48494 * 109.46866 * 239.99593 * 3 2 1 5 5 H 1.48502 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47182 * 119.99586 * 3 2 1 7 7 C 1.40043 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00278 * 185.06974 * 7 2 1 9 9 C 1.41335 * 119.99718 * 5.07254 * 7 2 1 10 10 C 1.40861 * 120.14697 * 174.93952 * 9 7 2 11 11 N 1.31862 * 119.96110 * 179.97438 * 10 9 7 12 12 C 1.32201 * 120.27970 * 359.97438 * 11 10 9 13 13 C 1.39984 * 120.30179 * 0.02562 * 12 11 10 14 14 C 1.48323 * 119.98412 * 179.97438 * 13 12 11 15 15 C 1.39513 * 120.05258 * 179.97438 * 14 13 12 16 16 C 1.38103 * 120.16222 * 180.02562 * 15 14 13 17 17 C 1.38076 * 120.28018 * 0.27769 * 16 15 14 18 18 C 1.39642 * 120.10554 * 359.44895 * 17 16 15 19 19 C 1.47858 * 120.08120 * 180.27817 * 18 17 16 20 20 O 1.21543 * 120.00420 * 7.61245 * 19 18 17 21 21 N 1.34784 * 119.99707 * 187.61229 * 19 18 17 22 22 C 1.47020 * 125.64767 * 354.03115 * 21 19 18 23 23 C 1.54312 * 107.27669 * 180.96780 * 22 21 19 24 24 C 1.55160 * 102.86236 * 22.52248 * 23 22 21 25 25 C 1.47425 * 125.64728 * 174.33401 * 21 19 18 26 26 C 1.39121 * 120.05265 * 0.02562 * 14 13 12 27 27 N 1.32536 * 120.03519 * 0.25123 * 13 12 11 28 28 H 0.96991 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.02187 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.85117 * 179.97438 * 12 11 10 31 31 H 1.07992 * 119.92014 * 0.04467 * 15 14 13 32 32 H 1.08000 * 119.85824 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.94980 * 179.70527 * 17 16 15 34 34 H 1.09003 * 109.88099 * 300.51077 * 22 21 19 35 35 H 1.09004 * 109.88584 * 61.67416 * 22 21 19 36 36 H 1.09001 * 110.92175 * 264.11000 * 23 22 21 37 37 H 1.08997 * 110.59330 * 140.78460 * 23 22 21 38 38 H 1.09000 * 111.00624 * 206.22863 * 24 23 22 39 39 H 1.09005 * 111.00477 * 82.37631 * 24 23 22 40 40 H 1.08998 * 110.36531 * 274.67739 * 25 21 19 41 41 H 1.09000 * 110.36545 * 36.89124 * 25 21 19 42 42 H 1.08001 * 120.13510 * 359.94900 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0951 1.6965 -1.2124 5 1 1.2762 2.7465 -0.0006 6 1 3.0949 1.6966 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0845 -1.2145 0.0832 9 6 1.3052 -2.4344 -0.1071 10 6 2.0105 -3.6490 -0.2142 11 7 1.3514 -4.7867 -0.3139 12 6 0.0294 -4.7935 -0.3135 13 6 -0.6830 -3.5931 -0.2077 14 6 -2.1661 -3.6088 -0.2086 15 6 -2.8776 -2.4134 -0.1027 16 6 -4.2585 -2.4255 -0.1027 17 6 -4.9444 -3.6198 -0.2017 18 6 -4.2438 -4.8225 -0.3139 19 6 -4.9788 -6.1006 -0.4260 20 8 -6.1869 -6.0973 -0.5599 21 7 -4.3091 -7.2694 -0.3798 22 6 -2.8469 -7.4183 -0.3464 23 6 -2.5407 -8.9305 -0.3227 24 6 -3.8287 -9.5532 -0.9233 25 6 -4.9215 -8.6103 -0.3608 26 6 -2.8500 -4.8157 -0.3139 27 7 -0.0329 -2.4421 -0.1124 28 1 -0.4850 0.8399 -0.0004 29 1 3.0906 -3.6485 -0.2137 30 1 -0.5034 -5.7293 -0.3960 31 1 -2.3471 -1.4763 -0.0208 32 1 -4.8043 -1.4971 -0.0209 33 1 -6.0243 -3.6234 -0.1964 34 1 -2.4075 -6.9631 -1.2340 35 1 -2.4466 -6.9469 0.5513 36 1 -2.3831 -9.2798 0.6977 37 1 -1.6759 -9.1564 -0.9466 38 1 -3.9721 -10.5735 -0.5675 39 1 -3.8073 -9.5204 -2.0126 40 1 -5.1799 -8.8949 0.6592 41 1 -5.8071 -8.6319 -0.9959 42 1 -2.3032 -5.7434 -0.3961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240053733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:42 Heat of formation + Delta-G solvation = 37.206456 kcal Electronic energy + Delta-G solvation = -26447.238631 eV Core-core repulsion = 22777.933351 eV Total energy + Delta-G solvation = -3669.305281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.72685 -40.84630 -39.33401 -38.40444 -35.95210 -34.42499 -33.50809 -33.04094 -31.77221 -30.62102 -29.85960 -27.94698 -25.98183 -25.13559 -24.23933 -23.05717 -22.82467 -21.81786 -20.66594 -19.43285 -18.53418 -17.71821 -17.53974 -17.34090 -17.05733 -16.85550 -16.47126 -15.81649 -15.48391 -15.31989 -15.06064 -14.82340 -14.60661 -14.50859 -14.08408 -13.91425 -13.55352 -13.41325 -13.32191 -13.26359 -12.97649 -12.69091 -12.59246 -12.40940 -12.13299 -12.00660 -11.71968 -11.64975 -11.52917 -11.47555 -11.23550 -11.05416 -10.28999 -10.02176 -9.76514 -9.38015 -9.17170 -8.40249 -6.66445 -0.29569 -0.00706 0.85929 1.15444 1.42514 1.53983 1.55545 1.79763 1.87167 2.19052 2.69434 2.95062 3.25112 3.50559 3.57948 3.78753 3.83632 3.90550 4.02089 4.03976 4.19029 4.22520 4.25833 4.37290 4.46645 4.49838 4.54105 4.58282 4.79404 4.81288 4.84515 4.93121 4.99008 5.03628 5.11575 5.13447 5.17077 5.21790 5.29123 5.39423 5.45250 5.63012 5.74208 5.89548 6.11287 6.30988 6.47761 6.70525 6.96787 7.27601 7.85862 8.29593 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.003484 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.507068 B = 8033.986321 C = 9512.311721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.436 4.436 8 H 0.103 0.897 9 C 0.178 3.822 10 C -0.081 4.081 11 N -0.432 5.432 12 C -0.114 4.114 13 C 0.125 3.875 14 C -0.054 4.054 15 C -0.066 4.066 16 C -0.129 4.129 17 C -0.059 4.059 18 C -0.154 4.154 19 C 0.576 3.424 20 O -0.576 6.576 21 N -0.614 5.614 22 C 0.074 3.926 23 C -0.128 4.128 24 C -0.122 4.122 25 C 0.096 3.904 26 C -0.099 4.099 27 N -0.469 5.469 28 H 0.285 0.715 29 H 0.150 0.850 30 H 0.159 0.841 31 H 0.131 0.869 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -10.438 -0.161 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.199 4.199 3 Si 0.811 3.189 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.121 0.879 9 C 0.052 3.948 10 C -0.250 4.250 11 N -0.144 5.144 12 C -0.273 4.273 13 C -0.022 4.022 14 C -0.055 4.055 15 C -0.085 4.085 16 C -0.146 4.146 17 C -0.079 4.079 18 C -0.157 4.157 19 C 0.367 3.633 20 O -0.458 6.458 21 N -0.346 5.346 22 C -0.048 4.048 23 C -0.166 4.166 24 C -0.160 4.160 25 C -0.026 4.026 26 C -0.117 4.117 27 N -0.187 5.187 28 H 0.096 0.904 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.179 -10.262 -0.229 12.526 hybrid contribution 0.429 1.034 0.022 1.120 sum -6.750 -9.228 -0.206 11.435 Atomic orbital electron populations 1.70100 1.08936 1.29940 1.27130 1.27025 0.95797 1.04624 0.92454 0.85105 0.78602 0.74983 0.80195 1.18328 1.19355 1.18089 1.20057 0.95764 0.89767 1.41184 0.87869 1.19806 0.89283 0.94645 0.91105 1.23443 1.00193 0.89117 1.12250 1.67698 1.09262 1.29939 1.07484 1.22922 0.90557 0.97791 1.16023 1.21114 0.93937 0.91706 0.95435 1.18714 0.90406 0.94159 1.02249 1.21865 0.94592 0.98888 0.93163 1.21318 0.93202 0.98952 1.01164 1.21449 1.00844 0.90805 0.94768 1.19752 0.93373 0.93686 1.08896 1.18006 0.86091 0.83285 0.75871 1.90706 1.15045 1.87619 1.52394 1.48448 1.08331 1.05910 1.71928 1.22806 0.79790 1.00029 1.02145 1.22754 0.99165 0.90965 1.03675 1.22801 0.92624 0.99378 1.01221 1.22498 0.97673 0.80414 1.01969 1.22876 0.93393 0.99625 0.95850 1.69487 1.08289 1.24580 1.16356 0.90391 0.83217 0.82444 0.85100 0.82692 0.83873 0.90209 0.90262 0.88943 0.88053 0.87014 0.90357 0.90409 0.91149 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.29 11.50 21.84 0.25 -36.04 16 2 C 0.02 1.16 5.49 85.29 0.47 1.63 16 3 Si 0.99 34.80 29.56 68.60 2.03 36.83 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 7 C -0.44 -21.77 9.15 23.47 0.21 -21.55 16 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 16 9 C 0.18 9.37 6.55 40.25 0.26 9.63 16 10 C -0.08 -3.94 10.98 85.33 0.94 -3.00 16 11 N -0.43 -20.25 10.47 -192.06 -2.01 -22.26 16 12 C -0.11 -5.01 10.61 85.06 0.90 -4.10 16 13 C 0.13 5.89 6.74 42.15 0.28 6.17 16 14 C -0.05 -2.17 5.87 -20.07 -0.12 -2.29 16 15 C -0.07 -2.57 9.58 22.55 0.22 -2.35 16 16 C -0.13 -4.05 10.02 22.20 0.22 -3.83 16 17 C -0.06 -1.85 9.59 22.57 0.22 -1.63 16 18 C -0.15 -5.01 5.87 -20.12 -0.12 -5.13 16 19 C 0.58 18.33 7.81 86.79 0.68 19.00 16 20 O -0.58 -21.19 16.59 -3.85 -0.06 -21.26 16 21 N -0.61 -15.32 3.33 -828.40 -2.76 -18.08 16 22 C 0.07 1.52 4.86 86.73 0.42 1.94 16 23 C -0.13 -1.70 6.95 31.78 0.22 -1.48 16 24 C -0.12 -1.49 7.08 31.99 0.23 -1.26 16 25 C 0.10 1.81 6.94 86.85 0.60 2.41 16 26 C -0.10 -3.31 7.99 22.76 0.18 -3.13 16 27 N -0.47 -24.75 7.14 -177.64 -1.27 -26.02 16 28 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 29 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 30 H 0.16 5.56 6.18 -2.91 -0.02 5.54 16 31 H 0.13 5.76 7.54 -2.91 -0.02 5.74 16 32 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.14 4.05 7.66 -2.91 -0.02 4.02 16 34 H 0.08 1.71 6.75 -2.39 -0.02 1.69 16 35 H 0.08 1.73 6.74 -2.38 -0.02 1.71 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.46 7.98 -2.39 -0.02 1.45 16 42 H 0.18 5.09 0.87 -7.99 -0.01 5.08 16 Total: -1.00 -66.12 348.67 3.06 -63.06 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 1.06 Total: 32.73 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 5.82 Total: -8.97 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -5.79 Total: -102.39 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.26 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -66.12 3.06 -63.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240053733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.267 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds