Wall clock time and date at job start Tue Mar 31 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86798 * 120.00387 * 2 1 4 4 H 1.48505 * 109.46972 * 269.99956 * 3 2 1 5 5 H 1.48497 * 109.47296 * 29.99584 * 3 2 1 6 6 H 1.48501 * 109.47553 * 149.99992 * 3 2 1 7 7 C 1.40148 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.41097 * 120.00189 * 0.02562 * 7 2 1 10 10 N 1.33639 * 119.13578 * 179.97438 * 9 7 2 11 11 C 1.31593 * 120.82944 * 179.97438 * 10 9 7 12 12 C 1.40429 * 119.09240 * 0.02562 * 11 10 9 13 13 C 1.47952 * 120.78626 * 179.97438 * 12 11 10 14 14 C 1.39757 * 120.08271 * 0.02697 * 13 12 11 15 15 C 1.38016 * 120.14799 * 179.97438 * 14 13 12 16 16 C 1.38150 * 120.30050 * 359.78850 * 15 14 13 17 17 C 1.39686 * 120.15335 * 0.46343 * 16 15 14 18 18 C 1.47870 * 120.07355 * 179.78668 * 17 16 15 19 19 O 1.21547 * 119.99874 * 140.07050 * 18 17 16 20 20 N 1.34776 * 120.00026 * 319.79814 * 18 17 16 21 21 C 1.47024 * 125.64742 * 354.52736 * 20 18 17 22 22 C 1.54311 * 107.27543 * 180.96579 * 21 20 18 23 23 C 1.55164 * 102.86337 * 22.52561 * 22 21 20 24 24 C 1.47422 * 125.64965 * 174.83291 * 20 18 17 25 25 C 1.39313 * 119.85491 * 359.52005 * 17 16 15 26 26 C 1.40412 * 118.41784 * 0.25384 * 12 11 10 27 27 N 1.31597 * 119.09961 * 359.50869 * 26 12 11 28 28 H 0.97003 * 119.99465 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.45632 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.92697 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.85128 * 180.02562 * 15 14 13 32 32 H 1.08003 * 119.92274 * 180.25972 * 16 15 14 33 33 H 1.09002 * 109.88192 * 300.51267 * 21 20 18 34 34 H 1.09000 * 109.88099 * 61.67760 * 21 20 18 35 35 H 1.09005 * 110.92636 * 264.11348 * 22 21 20 36 36 H 1.09006 * 110.59066 * 140.78563 * 22 21 20 37 37 H 1.08998 * 111.00098 * 206.22648 * 23 22 21 38 38 H 1.08997 * 111.00069 * 82.37777 * 23 22 21 39 39 H 1.09002 * 110.36708 * 274.67692 * 24 20 18 40 40 H 1.09005 * 110.36749 * 36.88843 * 24 20 18 41 41 H 1.08000 * 120.14812 * 180.27554 * 25 17 16 42 42 H 1.08008 * 120.45128 * 179.71898 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4401 0.7000 7 6 2.0072 -1.2137 0.0005 8 1 3.0873 -1.2138 0.0001 9 6 1.3017 -2.4357 0.0005 10 7 1.9873 -3.5828 0.0005 11 6 1.3633 -4.7414 0.0010 12 6 -0.0408 -4.7607 0.0010 13 6 -0.7806 -6.0420 0.0010 14 6 -0.0836 -7.2533 0.0016 15 6 -0.7723 -8.4493 0.0021 16 6 -2.1538 -8.4582 0.0065 17 6 -2.8631 -7.2548 0.0007 18 6 -4.3418 -7.2664 0.0006 19 8 -4.9558 -6.4607 0.6723 20 7 -5.0087 -8.1667 -0.7486 21 6 -4.3997 -9.1139 -1.6938 22 6 -5.5468 -9.9227 -2.3350 23 6 -6.7747 -8.9943 -2.1408 24 6 -6.4700 -8.3605 -0.7606 25 6 -2.1745 -6.0438 0.0005 26 6 -0.7259 -3.5350 -0.0050 27 7 -0.0345 -2.4153 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 1.9233 -5.6648 0.0006 30 1 0.9964 -7.2535 0.0016 31 1 -0.2288 -9.3826 0.0030 32 1 -2.6865 -9.3976 0.0111 33 1 -3.8522 -8.5695 -2.4632 34 1 -3.7263 -9.7866 -1.1625 35 1 -5.6933 -10.8697 -1.8154 36 1 -5.3528 -10.0891 -3.3947 37 1 -7.6993 -9.5707 -2.1106 38 1 -6.8160 -8.2331 -2.9198 39 1 -6.7699 -9.0352 0.0413 40 1 -6.9806 -7.4026 -0.6602 41 1 -2.7182 -5.1107 0.0005 42 1 -1.8058 -3.5115 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240059022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:50 Heat of formation + Delta-G solvation = 39.130926 kcal Electronic energy + Delta-G solvation = -25616.020274 eV Core-core repulsion = 21946.798445 eV Total energy + Delta-G solvation = -3669.221830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.34538 -39.21444 -38.07362 -37.20278 -34.13109 -32.60894 -32.07903 -31.57248 -30.64731 -29.42864 -28.78794 -26.14690 -24.88110 -23.29629 -22.83975 -21.82971 -21.33454 -20.86311 -19.42016 -18.08301 -17.31889 -16.77840 -16.23750 -16.08484 -15.66468 -15.19267 -14.72602 -14.57099 -14.01929 -13.91600 -13.76097 -13.38710 -13.27652 -13.22658 -12.94570 -12.77330 -12.56135 -12.29482 -12.18275 -11.74983 -11.52457 -11.49026 -11.38691 -11.22576 -11.01044 -10.95868 -10.79283 -10.41009 -9.87031 -9.79468 -9.33762 -9.26930 -9.04562 -8.80174 -8.61170 -7.46668 -7.46323 -6.73372 -4.87284 1.17910 1.52414 2.53179 2.82415 2.88259 2.95011 2.95507 3.00507 3.12132 3.73474 4.15521 4.18930 4.29810 4.56242 4.56836 4.74636 4.95777 5.06206 5.12747 5.18164 5.39417 5.40127 5.43573 5.54707 5.57340 5.61833 5.68769 5.72921 5.75088 5.78627 5.83668 5.89742 6.05029 6.17220 6.20664 6.35181 6.58799 6.64166 6.70759 6.80738 6.96356 7.22711 7.31864 7.41605 7.50717 7.95878 8.16667 8.29029 8.36896 8.93667 9.90751 10.09682 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002595 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.269134 B =10788.266331 C =11690.624576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.058 3.942 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.371 4.371 8 H 0.098 0.902 9 C 0.377 3.623 10 N -0.592 5.592 11 C 0.191 3.809 12 C -0.335 4.335 13 C 0.038 3.962 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.135 4.135 17 C -0.117 4.117 18 C 0.579 3.421 19 O -0.534 6.534 20 N -0.620 5.620 21 C 0.096 3.904 22 C -0.133 4.133 23 C -0.134 4.134 24 C 0.104 3.896 25 C -0.092 4.092 26 C 0.184 3.816 27 N -0.507 5.507 28 H 0.281 0.719 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -16.630 -4.664 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.171 4.171 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.403 4.403 8 H 0.116 0.884 9 C 0.146 3.854 10 N -0.311 5.311 11 C 0.015 3.985 12 C -0.345 4.345 13 C 0.035 3.965 14 C -0.146 4.146 15 C -0.129 4.129 16 C -0.154 4.154 17 C -0.120 4.120 18 C 0.369 3.631 19 O -0.411 6.411 20 N -0.355 5.355 21 C -0.027 4.027 22 C -0.171 4.171 23 C -0.172 4.172 24 C -0.018 4.018 25 C -0.111 4.111 26 C 0.007 3.993 27 N -0.223 5.223 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.842 -14.891 -4.240 17.830 hybrid contribution -0.250 -0.348 -0.008 0.429 sum -9.092 -15.240 -4.248 18.247 Atomic orbital electron populations 1.70117 1.07512 1.28899 1.24655 1.26265 0.95167 1.01880 0.93805 0.86048 0.80385 0.79321 0.79617 1.18974 1.19716 1.18059 1.19557 0.95171 0.87828 1.37794 0.88420 1.19977 0.86010 0.90889 0.88561 1.68654 1.40733 0.98447 1.23225 1.22671 0.90383 0.95877 0.89564 1.19685 0.95256 0.92929 1.26636 1.18642 0.91747 0.92634 0.93429 1.21320 0.99958 0.91652 1.01627 1.20855 0.93686 0.97752 1.00636 1.21113 0.94319 0.96258 1.03690 1.19543 0.91340 0.94779 1.06355 1.18228 0.87454 0.78952 0.78433 1.90785 1.69666 1.38082 1.42517 1.48377 1.07516 1.36982 1.42611 1.22261 0.96276 0.91779 0.92403 1.22667 0.94461 0.98385 1.01581 1.22791 0.98381 0.99156 0.96895 1.22216 0.81088 1.01325 0.97217 1.21184 0.93556 0.96647 0.99690 1.23098 0.99172 0.87923 0.89117 1.69371 1.08048 1.26730 1.18157 0.90783 0.84977 0.85935 0.86208 0.86245 0.90996 0.90629 0.90492 0.89918 0.89820 0.90481 0.91522 0.90249 0.85492 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.64 11.40 55.56 0.63 -17.01 16 2 C 0.06 1.41 5.50 -17.34 -0.10 1.32 16 3 Si 0.92 17.71 29.56 -169.99 -5.02 12.68 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.37 -9.79 9.35 -37.78 -0.35 -10.15 16 8 H 0.10 2.45 7.85 -52.48 -0.41 2.04 16 9 C 0.38 10.42 7.35 -158.17 -1.16 9.25 16 10 N -0.59 -15.29 10.34 -12.41 -0.13 -15.42 16 11 C 0.19 4.25 10.70 -16.83 -0.18 4.07 16 12 C -0.34 -7.33 5.94 -104.28 -0.62 -7.95 16 13 C 0.04 0.69 5.88 -104.92 -0.62 0.08 16 14 C -0.13 -1.96 9.45 -39.10 -0.37 -2.33 16 15 C -0.11 -1.44 10.02 -39.69 -0.40 -1.84 16 16 C -0.14 -1.78 8.46 -39.07 -0.33 -2.11 16 17 C -0.12 -1.87 5.47 -105.01 -0.57 -2.45 16 18 C 0.58 9.38 7.46 -12.32 -0.09 9.28 16 19 O -0.53 -10.58 17.15 5.32 0.09 -10.48 16 20 N -0.62 -7.58 3.33 -171.63 -0.57 -8.15 16 21 C 0.10 0.85 5.80 -3.07 -0.02 0.83 16 22 C -0.13 -0.81 6.95 -24.90 -0.17 -0.98 16 23 C -0.13 -0.89 7.08 -24.58 -0.17 -1.07 16 24 C 0.10 1.02 6.94 -2.53 -0.02 1.01 16 25 C -0.09 -1.66 9.04 -38.75 -0.35 -2.01 16 26 C 0.18 4.44 10.70 -16.83 -0.18 4.26 16 27 N -0.51 -13.87 7.83 -12.41 -0.10 -13.96 16 28 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 29 H 0.13 2.43 6.32 -52.49 -0.33 2.10 16 30 H 0.12 1.71 6.27 -52.49 -0.33 1.39 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.26 5.65 -52.48 -0.30 0.96 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.60 5.47 -51.93 -0.28 0.32 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.88 7.98 -51.93 -0.41 0.47 16 41 H 0.13 2.41 6.28 -52.49 -0.33 2.08 16 42 H 0.13 2.89 6.33 -52.48 -0.33 2.55 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -32.04 350.36 -10.34 -42.39 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.82 Total: 5.46 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -5.70 Total: -0.79 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.16 Total: -54.54 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.02 Total: 12.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.04 -10.34 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240059022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.519 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds