Wall clock time and date at job start Tue Mar 31 2020 14:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86798 * 120.00387 * 2 1 4 4 H 1.48505 * 109.46972 * 269.99956 * 3 2 1 5 5 H 1.48497 * 109.47296 * 29.99584 * 3 2 1 6 6 H 1.48501 * 109.47553 * 149.99992 * 3 2 1 7 7 C 1.40148 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.41097 * 120.00189 * 0.02562 * 7 2 1 10 10 N 1.33639 * 119.13578 * 179.97438 * 9 7 2 11 11 C 1.31593 * 120.82944 * 179.97438 * 10 9 7 12 12 C 1.40429 * 119.09240 * 0.02562 * 11 10 9 13 13 C 1.47952 * 120.78626 * 179.97438 * 12 11 10 14 14 C 1.39757 * 120.08271 * 0.02697 * 13 12 11 15 15 C 1.38016 * 120.14799 * 179.97438 * 14 13 12 16 16 C 1.38150 * 120.30050 * 359.78850 * 15 14 13 17 17 C 1.39686 * 120.15335 * 0.46343 * 16 15 14 18 18 C 1.47870 * 120.07355 * 179.78668 * 17 16 15 19 19 O 1.21547 * 119.99874 * 140.07050 * 18 17 16 20 20 N 1.34776 * 120.00026 * 319.79814 * 18 17 16 21 21 C 1.47024 * 125.64742 * 354.52736 * 20 18 17 22 22 C 1.54311 * 107.27543 * 180.96579 * 21 20 18 23 23 C 1.55164 * 102.86337 * 22.52561 * 22 21 20 24 24 C 1.47422 * 125.64965 * 174.83291 * 20 18 17 25 25 C 1.39313 * 119.85491 * 359.52005 * 17 16 15 26 26 C 1.40412 * 118.41784 * 0.25384 * 12 11 10 27 27 N 1.31597 * 119.09961 * 359.50869 * 26 12 11 28 28 H 0.97003 * 119.99465 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.45632 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.92697 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.85128 * 180.02562 * 15 14 13 32 32 H 1.08003 * 119.92274 * 180.25972 * 16 15 14 33 33 H 1.09002 * 109.88192 * 300.51267 * 21 20 18 34 34 H 1.09000 * 109.88099 * 61.67760 * 21 20 18 35 35 H 1.09005 * 110.92636 * 264.11348 * 22 21 20 36 36 H 1.09006 * 110.59066 * 140.78563 * 22 21 20 37 37 H 1.08998 * 111.00098 * 206.22648 * 23 22 21 38 38 H 1.08997 * 111.00069 * 82.37777 * 23 22 21 39 39 H 1.09002 * 110.36708 * 274.67692 * 24 20 18 40 40 H 1.09005 * 110.36749 * 36.88843 * 24 20 18 41 41 H 1.08000 * 120.14812 * 180.27554 * 25 17 16 42 42 H 1.08008 * 120.45128 * 179.71898 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4401 0.7000 7 6 2.0072 -1.2137 0.0005 8 1 3.0873 -1.2138 0.0001 9 6 1.3017 -2.4357 0.0005 10 7 1.9873 -3.5828 0.0005 11 6 1.3633 -4.7414 0.0010 12 6 -0.0408 -4.7607 0.0010 13 6 -0.7806 -6.0420 0.0010 14 6 -0.0836 -7.2533 0.0016 15 6 -0.7723 -8.4493 0.0021 16 6 -2.1538 -8.4582 0.0065 17 6 -2.8631 -7.2548 0.0007 18 6 -4.3418 -7.2664 0.0006 19 8 -4.9558 -6.4607 0.6723 20 7 -5.0087 -8.1667 -0.7486 21 6 -4.3997 -9.1139 -1.6938 22 6 -5.5468 -9.9227 -2.3350 23 6 -6.7747 -8.9943 -2.1408 24 6 -6.4700 -8.3605 -0.7606 25 6 -2.1745 -6.0438 0.0005 26 6 -0.7259 -3.5350 -0.0050 27 7 -0.0345 -2.4153 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 1.9233 -5.6648 0.0006 30 1 0.9964 -7.2535 0.0016 31 1 -0.2288 -9.3826 0.0030 32 1 -2.6865 -9.3976 0.0111 33 1 -3.8522 -8.5695 -2.4632 34 1 -3.7263 -9.7866 -1.1625 35 1 -5.6933 -10.8697 -1.8154 36 1 -5.3528 -10.0891 -3.3947 37 1 -7.6993 -9.5707 -2.1106 38 1 -6.8160 -8.2331 -2.9198 39 1 -6.7699 -9.0352 0.0413 40 1 -6.9806 -7.4026 -0.6602 41 1 -2.7182 -5.1107 0.0005 42 1 -1.8058 -3.5115 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240059022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:49 Heat of formation + Delta-G solvation = 19.879916 kcal Electronic energy + Delta-G solvation = -25616.855061 eV Core-core repulsion = 21946.798445 eV Total energy + Delta-G solvation = -3670.056616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51512 -40.90867 -39.33324 -38.31281 -35.90768 -34.09354 -33.84551 -32.77358 -31.79098 -30.77190 -29.83675 -27.86870 -26.05837 -24.77714 -24.46198 -23.01382 -22.37594 -22.01423 -20.55360 -19.89306 -18.46788 -18.07488 -17.65832 -17.42936 -16.88639 -16.76904 -16.15446 -15.89992 -15.26048 -15.11606 -15.05792 -14.74691 -14.46845 -14.41873 -14.21518 -14.03299 -13.88951 -13.56917 -13.28520 -13.18505 -12.94390 -12.81524 -12.64677 -12.31287 -12.13198 -12.02771 -11.94212 -11.56293 -11.47149 -11.26250 -11.20059 -10.99520 -10.65287 -9.96364 -9.68248 -9.36529 -9.09123 -8.54262 -6.78564 -0.16178 0.14036 0.94142 1.04659 1.37170 1.48753 1.54859 1.66524 1.93950 2.14683 2.61828 2.98664 3.38228 3.67767 3.77632 3.82592 3.85392 3.85877 3.93968 4.04637 4.08337 4.20158 4.30186 4.34330 4.43034 4.48364 4.52272 4.67511 4.74862 4.86033 4.93033 4.94861 4.99756 5.07813 5.10382 5.13064 5.20779 5.23910 5.35356 5.44952 5.47130 5.70682 5.78471 6.00441 6.05505 6.35864 6.40864 6.48994 6.98353 7.06485 8.09865 8.24478 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002595 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.269134 B =10788.266331 C =11690.624576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.017 3.983 3 Si 1.005 2.995 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.098 0.902 9 C 0.350 3.650 10 N -0.614 5.614 11 C 0.180 3.820 12 C -0.317 4.317 13 C 0.005 3.995 14 C -0.116 4.116 15 C -0.098 4.098 16 C -0.107 4.107 17 C -0.129 4.129 18 C 0.570 3.430 19 O -0.588 6.588 20 N -0.614 5.614 21 C 0.084 3.916 22 C -0.122 4.122 23 C -0.126 4.126 24 C 0.093 3.907 25 C -0.107 4.107 26 C 0.158 3.842 27 N -0.541 5.541 28 H 0.288 0.712 29 H 0.176 0.824 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.158 0.842 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.099 0.901 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -20.949 -5.546 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.208 4.208 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.175 1.175 7 C -0.447 4.447 8 H 0.116 0.884 9 C 0.116 3.884 10 N -0.333 5.333 11 C 0.007 3.993 12 C -0.326 4.326 13 C 0.003 3.997 14 C -0.135 4.135 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.132 4.132 18 C 0.360 3.640 19 O -0.469 6.469 20 N -0.347 5.347 21 C -0.037 4.037 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.029 4.029 25 C -0.127 4.127 26 C -0.017 4.017 27 N -0.258 5.258 28 H 0.099 0.901 29 H 0.193 0.807 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.655 -19.329 -5.161 21.798 hybrid contribution -0.536 0.544 0.235 0.799 sum -9.191 -18.785 -4.925 21.486 Atomic orbital electron populations 1.70200 1.09287 1.30277 1.26028 1.27267 0.95931 1.05169 0.92419 0.84867 0.78825 0.74048 0.79940 1.18110 1.18679 1.17506 1.19856 0.95403 0.88821 1.40584 0.88364 1.20400 0.86419 0.92082 0.89475 1.68676 1.41186 0.99085 1.24379 1.23342 0.90878 0.96407 0.88707 1.19971 0.95515 0.93747 1.23413 1.18535 0.91716 0.92409 0.97034 1.21626 1.01067 0.91147 0.99617 1.21359 0.93508 0.98582 0.98115 1.21592 0.94787 0.96359 0.99741 1.19650 0.91544 0.95094 1.06959 1.18366 0.87704 0.79272 0.78662 1.90752 1.70552 1.40436 1.45187 1.48502 1.08790 1.35988 1.41430 1.22593 0.97791 0.91494 0.91869 1.22697 0.92297 0.98267 1.02709 1.22792 1.00090 0.99249 0.94238 1.22476 0.79579 1.00850 1.00009 1.21071 0.93725 0.96879 1.00975 1.23380 0.99637 0.88756 0.89929 1.69317 1.08449 1.28278 1.19792 0.90104 0.80688 0.83969 0.81262 0.82517 0.91535 0.88848 0.88456 0.88069 0.87214 0.91127 0.90215 0.92589 0.88243 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.82 11.40 21.86 0.25 -39.57 16 2 C 0.02 0.85 5.50 85.33 0.47 1.32 16 3 Si 1.01 37.47 29.56 68.60 2.03 39.50 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 6 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 7 C -0.41 -23.07 9.35 23.44 0.22 -22.85 16 8 H 0.10 5.20 7.85 -2.91 -0.02 5.18 16 9 C 0.35 20.45 7.35 134.91 0.99 21.44 16 10 N -0.61 -32.84 10.34 -193.17 -2.00 -34.84 16 11 C 0.18 8.10 10.70 85.26 0.91 9.01 16 12 C -0.32 -14.29 5.94 -19.64 -0.12 -14.41 16 13 C 0.00 0.18 5.88 -20.06 -0.12 0.06 16 14 C -0.12 -3.19 9.45 22.58 0.21 -2.97 16 15 C -0.10 -2.00 10.02 22.20 0.22 -1.78 16 16 C -0.11 -2.34 8.46 22.60 0.19 -2.15 16 17 C -0.13 -4.01 5.47 -20.12 -0.11 -4.12 16 18 C 0.57 18.52 7.46 86.79 0.65 19.16 16 19 O -0.59 -24.57 17.15 -3.86 -0.07 -24.63 16 20 N -0.61 -14.09 3.33 -815.19 -2.71 -16.81 16 21 C 0.08 1.18 5.80 86.72 0.50 1.68 16 22 C -0.12 -0.93 6.95 31.78 0.22 -0.71 16 23 C -0.13 -1.30 7.08 31.99 0.23 -1.07 16 24 C 0.09 1.71 6.94 86.85 0.60 2.31 16 25 C -0.11 -3.99 9.04 22.81 0.21 -3.79 16 26 C 0.16 8.16 10.70 85.26 0.91 9.07 16 27 N -0.54 -31.69 7.83 -193.17 -1.51 -33.21 16 28 H 0.29 13.84 8.29 -92.71 -0.77 13.08 16 29 H 0.18 6.08 6.32 -2.92 -0.02 6.06 16 30 H 0.14 3.33 6.27 -2.91 -0.02 3.31 16 31 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.16 2.32 5.65 -2.91 -0.02 2.30 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.98 5.47 -2.39 -0.01 0.96 16 35 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.29 7.98 -2.38 -0.02 1.27 16 41 H 0.10 4.16 6.28 -2.91 -0.02 4.14 16 42 H 0.14 6.61 6.33 -2.91 -0.02 6.59 16 Total: -1.00 -78.47 350.36 3.25 -75.22 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 1.07 Total: 24.12 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.19 Total: 10.22 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -5.97 Total: -124.42 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -78.47 3.25 -75.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240059022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.103 kcal (2) G-P(sol) polarization free energy of solvation -78.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds