Wall clock time and date at job start Tue Mar 31 2020 13:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39597 * 120.45914 * 314.32865 * 3 2 1 5 5 C 1.37696 * 120.17999 * 180.02562 * 4 3 2 6 6 C 1.39797 * 121.17464 * 359.97438 * 5 4 3 7 7 C 1.48352 * 119.53443 * 180.02562 * 6 5 4 8 8 C 1.40913 * 126.23954 * 179.97438 * 7 6 5 9 9 N 1.30639 * 108.08065 * 179.97438 * 8 7 6 10 10 N 1.40003 * 108.55443 * 359.97438 * 9 8 7 11 11 C 1.46501 * 125.88071 * 179.97438 * 10 9 8 12 12 C 1.53177 * 109.54466 * 95.02490 * 11 10 9 13 13 C 1.53092 * 109.21419 * 176.87974 * 12 11 10 14 14 O 1.42912 * 109.41110 * 302.35513 * 13 12 11 15 15 C 1.42902 * 114.09482 * 61.16249 * 14 13 12 16 16 C 1.53087 * 109.41514 * 298.83832 * 15 14 13 17 17 C 1.34756 * 108.23535 * 0.22768 * 10 9 8 18 18 C 1.38608 * 120.93382 * 0.29547 * 6 5 4 19 19 C 1.40574 * 119.73398 * 359.45573 * 18 6 5 20 20 C 1.40848 * 120.55331 * 180.24559 * 19 18 6 21 21 H 1.08003 * 120.00427 * 204.66028 * 20 19 18 22 22 C 1.40230 * 120.00019 * 24.65747 * 20 19 18 23 23 N 1.30658 * 119.99785 * 17.29038 * 22 20 19 24 24 Si 1.86803 * 119.99950 * 197.28745 * 22 20 19 25 25 H 1.48497 * 109.46801 * 90.00253 * 24 22 20 26 26 H 1.48502 * 109.46702 * 209.99884 * 24 22 20 27 27 H 1.48493 * 109.47091 * 330.00293 * 24 22 20 28 28 H 1.08004 * 119.91174 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.41009 * 180.02562 * 5 4 3 30 30 H 1.08002 * 125.95401 * 359.97438 * 8 7 6 31 31 H 1.09002 * 109.61562 * 334.79949 * 11 10 9 32 32 H 1.08996 * 109.52433 * 56.94231 * 12 11 10 33 33 H 1.09002 * 109.52019 * 296.81405 * 12 11 10 34 34 H 1.08995 * 109.48265 * 62.33893 * 13 12 11 35 35 H 1.08996 * 109.47959 * 182.38100 * 13 12 11 36 36 H 1.08999 * 109.48064 * 58.82193 * 15 14 13 37 37 H 1.09003 * 109.47461 * 178.85485 * 15 14 13 38 38 H 1.09001 * 109.52396 * 177.52311 * 16 15 14 39 39 H 1.09005 * 109.52189 * 297.64230 * 16 15 14 40 40 H 1.08003 * 126.19750 * 179.75544 * 17 10 9 41 41 H 1.08000 * 120.12901 * 179.72606 * 18 6 5 42 42 H 0.97007 * 120.00304 * 184.65765 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2761 -0.8399 0.8608 5 6 4.6530 -0.8342 0.8564 6 6 5.3705 0.0044 -0.0018 7 6 6.8536 -0.0196 0.0234 8 6 7.7130 0.7606 -0.7755 9 7 8.9445 0.4566 -0.4628 10 7 8.9213 -0.5204 0.5397 11 6 10.0939 -1.1333 1.1686 12 6 10.4282 -0.3885 2.4648 13 6 11.6054 -1.0822 3.1552 14 8 11.2705 -2.4486 3.4064 15 6 10.9948 -3.2080 2.2276 16 6 9.7932 -2.5996 1.4999 17 6 7.6346 -0.8040 0.8225 18 6 4.7157 0.8619 -0.8719 19 6 3.3105 0.8840 -0.9035 20 6 2.6275 1.7448 -1.7845 21 1 1.6205 2.0621 -1.5572 22 6 3.2551 2.1900 -2.9569 23 7 4.3102 1.5667 -3.4101 24 14 2.5825 3.6740 -3.8706 25 1 3.2270 4.9077 -3.3532 26 1 2.8716 3.5352 -5.3206 27 1 1.1144 3.7586 -3.6644 28 1 2.7424 -1.4964 1.5321 29 1 5.1882 -1.4899 1.5272 30 1 7.4069 1.4837 -1.5171 31 1 10.9438 -1.0804 0.4881 32 1 9.5611 -0.3991 3.1250 33 1 10.6975 0.6421 2.2335 34 1 12.4834 -1.0356 2.5110 35 1 11.8198 -0.5811 4.0991 36 1 11.8649 -3.1892 1.5714 37 1 10.7695 -4.2382 2.5034 38 1 9.6085 -3.1507 0.5778 39 1 8.9128 -2.6559 2.1403 40 1 7.2846 -1.5209 1.5505 41 1 5.2830 1.5074 -1.5261 42 1 4.7843 1.9138 -4.1820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240081535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:04 Heat of formation + Delta-G solvation = 51.918993 kcal Electronic energy + Delta-G solvation = -25769.105648 eV Core-core repulsion = 22100.438351 eV Total energy + Delta-G solvation = -3668.667297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.26566 -40.15068 -39.22524 -36.95800 -35.91028 -35.56771 -32.87546 -32.20000 -31.70494 -31.27092 -29.47398 -27.48437 -25.87283 -24.69474 -24.05308 -23.21814 -22.00825 -21.32806 -20.56053 -19.39903 -18.67711 -18.26780 -17.07979 -17.02639 -16.70077 -16.05346 -15.82359 -15.78558 -15.57593 -15.39561 -14.87556 -14.59332 -14.45606 -14.41102 -14.31205 -13.92460 -13.62479 -13.41874 -13.37674 -13.24730 -13.04401 -12.74313 -12.63266 -12.57617 -12.36625 -12.16112 -11.98673 -11.87980 -11.55257 -11.38619 -11.27139 -11.13046 -10.68975 -10.33958 -10.13546 -9.41872 -8.82940 -8.38326 -6.46393 0.23291 1.01199 1.08587 1.38166 1.48791 1.51802 1.52537 1.85933 2.09580 2.16753 2.66775 2.76954 2.93162 3.34492 3.62750 3.69956 3.80996 3.86152 3.89850 3.92179 3.97526 4.21705 4.32204 4.35739 4.50472 4.55882 4.61854 4.70603 4.77201 4.79915 4.84451 4.90645 4.99797 5.01004 5.05535 5.12193 5.27750 5.34364 5.53666 5.69319 5.88346 6.02742 6.13844 6.20226 6.21344 6.24826 6.55274 6.74052 6.77839 6.88543 7.04009 8.15123 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.003008 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.158258 B = 9307.572645 C =10600.306792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C 0.306 3.694 3 C -0.218 4.218 4 C -0.024 4.024 5 C -0.233 4.233 6 C 0.039 3.961 7 C -0.206 4.206 8 C 0.057 3.943 9 N -0.324 5.324 10 N -0.363 5.363 11 C 0.156 3.844 12 C -0.162 4.162 13 C 0.068 3.932 14 O -0.397 6.397 15 C 0.067 3.933 16 C -0.163 4.163 17 C 0.079 3.921 18 C -0.177 4.177 19 C 0.135 3.865 20 C -0.470 4.470 21 H 0.064 0.936 22 C 0.049 3.951 23 N -0.785 5.785 24 Si 0.971 3.029 25 H -0.252 1.252 26 H -0.261 1.261 27 H -0.272 1.272 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.180 0.820 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.201 0.799 41 H 0.119 0.881 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.817 -6.082 8.238 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.218 5.218 2 C -0.002 4.002 3 C -0.224 4.224 4 C -0.044 4.044 5 C -0.252 4.252 6 C 0.037 3.963 7 C -0.217 4.217 8 C -0.129 4.129 9 N -0.144 5.144 10 N -0.144 5.144 11 C 0.056 3.944 12 C -0.201 4.201 13 C -0.009 4.009 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.202 4.202 17 C -0.068 4.068 18 C -0.197 4.197 19 C 0.130 3.870 20 C -0.498 4.498 21 H 0.082 0.918 22 C -0.171 4.171 23 N -0.408 5.408 24 Si 0.792 3.208 25 H -0.177 1.177 26 H -0.185 1.185 27 H -0.196 1.196 28 H 0.144 0.856 29 H 0.151 0.849 30 H 0.197 0.803 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.218 0.782 41 H 0.136 0.864 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.591 -6.045 8.004 22.009 hybrid contribution -1.255 0.910 -0.978 1.832 sum 18.336 -5.135 7.026 20.297 Atomic orbital electron populations 1.80982 1.13321 1.13591 1.13881 1.26100 0.93053 0.90650 0.90424 1.17233 0.82823 1.09923 1.12469 1.20669 0.94203 0.94675 0.94882 1.20433 0.92712 1.06449 1.05632 1.18113 0.89572 0.94538 0.94110 1.19189 0.93303 1.04867 1.04375 1.24063 0.89650 0.99674 0.99478 1.77112 1.21513 1.08512 1.07269 1.48809 1.05632 1.30717 1.29253 1.21570 0.85628 0.92957 0.94291 1.22638 1.01216 1.00565 0.95652 1.22652 0.94825 0.81479 1.01927 1.87961 1.89508 1.22174 1.31936 1.22691 0.95447 0.96171 0.86682 1.22671 1.01776 0.92823 1.02905 1.22752 0.83750 1.00123 1.00194 1.21182 0.92945 1.03364 1.02211 1.18610 0.92229 0.87651 0.88555 1.19804 1.01259 1.24733 1.04010 0.91762 1.26623 0.94648 0.98962 0.96896 1.69731 1.15862 1.34425 1.20800 0.85349 0.79353 0.78262 0.77874 1.17651 1.18478 1.19640 0.85621 0.84939 0.80336 0.87689 0.90919 0.90472 0.91267 0.86923 0.91313 0.86354 0.89263 0.89653 0.78214 0.86362 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -26.85 18.54 19.01 0.35 -26.50 16 2 C 0.31 14.88 14.28 88.33 1.26 16.14 16 3 C -0.22 -10.19 5.95 -19.53 -0.12 -10.31 16 4 C -0.02 -0.93 9.74 22.47 0.22 -0.71 16 5 C -0.23 -8.39 9.50 22.52 0.21 -8.18 16 6 C 0.04 1.56 5.86 -20.12 -0.12 1.44 16 7 C -0.21 -7.14 6.03 -20.33 -0.12 -7.26 16 8 C 0.06 1.99 11.39 85.53 0.97 2.96 16 9 N -0.32 -10.40 12.54 -56.43 -0.71 -11.11 16 10 N -0.36 -9.34 3.53 -325.86 -1.15 -10.49 16 11 C 0.16 2.72 3.29 45.16 0.15 2.87 16 12 C -0.16 -2.48 5.74 30.68 0.18 -2.30 16 13 C 0.07 0.78 6.84 72.01 0.49 1.27 16 14 O -0.40 -5.64 10.77 -148.98 -1.60 -7.24 16 15 C 0.07 0.68 6.84 72.01 0.49 1.17 16 16 C -0.16 -2.11 5.12 30.73 0.16 -1.95 16 17 C 0.08 2.13 9.94 83.84 0.83 2.96 16 18 C -0.18 -8.21 8.21 22.93 0.19 -8.02 16 19 C 0.13 6.74 5.73 -19.90 -0.11 6.62 16 20 C -0.47 -24.21 8.58 23.39 0.20 -24.01 16 21 H 0.06 3.44 7.37 -2.91 -0.02 3.42 16 22 C 0.05 2.30 5.16 85.35 0.44 2.74 16 23 N -0.78 -36.67 10.94 21.87 0.24 -36.43 16 24 Si 0.97 36.44 29.60 68.60 2.03 38.47 16 25 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 27 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 29 H 0.13 3.70 6.90 -2.91 -0.02 3.68 16 30 H 0.18 6.23 7.30 -2.91 -0.02 6.21 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.12 7.00 -2.38 -0.02 1.11 16 40 H 0.20 4.03 6.32 -2.91 -0.02 4.01 16 41 H 0.12 5.59 5.08 -2.91 -0.01 5.58 16 42 H 0.30 12.42 8.30 -92.70 -0.77 11.65 16 Total: -1.00 -62.09 356.91 5.55 -56.54 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 1.06 Total: 21.32 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 5.33 Total: -24.55 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.26 Total: -84.54 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -1.60 Total: -7.24 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -62.09 5.55 -56.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240081535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.459 kcal (2) G-P(sol) polarization free energy of solvation -62.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds