Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48495 * 109.47120 * 89.99926 * 3 2 1 5 5 H 1.48506 * 109.46761 * 209.99788 * 3 2 1 6 6 H 1.48501 * 109.46861 * 329.99424 * 3 2 1 7 7 C 1.39680 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99244 * 179.97438 * 7 2 1 9 9 C 1.40943 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.38988 * 126.93097 * 21.34612 * 9 7 2 11 11 N 1.35621 * 109.23497 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.70162 * 179.97438 * 11 10 9 13 13 C 1.38164 * 110.59589 * 359.97438 * 11 10 9 14 14 C 1.39173 * 132.73728 * 180.02562 * 13 11 10 15 15 C 1.37993 * 120.23090 * 179.28961 * 14 13 11 16 16 C 1.38386 * 120.76242 * 0.55023 * 15 14 13 17 17 C 1.39094 * 120.10440 * 359.66948 * 16 15 14 18 18 C 1.48298 * 120.27229 * 179.97438 * 17 16 15 19 19 C 1.40921 * 126.23636 * 236.30667 * 18 17 16 20 20 N 1.30654 * 108.08863 * 179.97438 * 19 18 17 21 21 N 1.40012 * 108.55764 * 359.97438 * 20 19 18 22 22 C 1.46496 * 125.88103 * 179.97438 * 21 20 19 23 23 H 1.09000 * 110.45731 * 332.42088 * 22 21 20 24 24 C 1.54510 * 110.50933 * 95.02957 * 22 21 20 25 25 C 1.54480 * 104.06507 * 118.64416 * 24 22 21 26 26 O 1.44424 * 104.80194 * 23.97403 * 25 24 22 27 27 C 1.44424 * 105.27811 * 319.49108 * 26 25 24 28 28 C 1.34818 * 108.23213 * 359.75986 * 21 20 19 29 29 C 1.40184 * 119.45176 * 359.97289 * 17 16 15 30 30 H 0.96995 * 119.99932 * 0.02562 * 1 2 3 31 31 H 1.07997 * 125.38234 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.88450 * 359.97429 * 14 13 11 33 33 H 1.07999 * 119.61868 * 180.21985 * 15 14 13 34 34 H 1.08000 * 119.94316 * 179.63901 * 16 15 14 35 35 H 1.07998 * 125.95604 * 359.94908 * 19 18 17 36 36 H 1.09007 * 110.50551 * 237.28471 * 24 22 21 37 37 H 1.08997 * 110.51044 * 359.97438 * 24 22 21 38 38 H 1.08999 * 110.37355 * 142.80691 * 25 24 22 39 39 H 1.09002 * 110.36946 * 265.03334 * 25 24 22 40 40 H 1.09000 * 110.37009 * 281.68071 * 27 26 25 41 41 H 1.08997 * 110.37137 * 159.34518 * 27 26 25 42 42 H 1.07995 * 126.19915 * 180.27665 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4923 2.0464 1.4000 5 1 3.5424 1.4401 -0.7000 6 1 1.4423 2.6526 -0.7002 7 6 2.0092 -1.2097 0.0005 8 1 3.0892 -1.2096 0.0001 9 6 1.3045 -2.4303 0.0005 10 6 -0.0091 -2.6362 -0.4043 11 7 -0.3225 -3.9472 -0.2546 12 1 -1.1841 -4.3371 -0.4701 13 6 0.7557 -4.6504 0.2473 14 6 0.9408 -5.9913 0.5710 15 6 2.1580 -6.4282 1.0523 16 6 3.2071 -5.5437 1.2315 17 6 3.0459 -4.1978 0.9196 18 6 4.1674 -3.2465 1.1107 19 6 4.1404 -2.0725 1.8897 20 7 5.3148 -1.5054 1.8096 21 7 6.1319 -2.2875 0.9844 22 6 7.5257 -2.0008 0.6361 23 1 7.7143 -0.9278 0.6715 24 6 8.4863 -2.7511 1.5856 25 6 9.2890 -3.6814 0.6493 26 8 9.2177 -3.0502 -0.6477 27 6 7.8616 -2.5666 -0.7616 28 6 5.4166 -3.3522 0.5694 29 6 1.8145 -3.7480 0.4232 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6747 -1.8730 -0.7797 32 1 0.1324 -6.6943 0.4346 33 1 2.2919 -7.4715 1.2970 34 1 4.1523 -5.8989 1.6145 35 1 3.2961 -1.7052 2.4541 36 1 9.1515 -2.0492 2.0886 37 1 7.9242 -3.3349 2.3144 38 1 10.3250 -3.7513 0.9809 39 1 8.8341 -4.6714 0.6169 40 1 7.1867 -3.3851 -1.0119 41 1 7.8011 -1.7802 -1.5139 42 1 5.7672 -4.1439 -0.0760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240640846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = 91.753034 kcal Electronic energy + Delta-G solvation = -26938.515153 eV Core-core repulsion = 23271.575189 eV Total energy + Delta-G solvation = -3666.939964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.98180 -39.65609 -39.08604 -35.76187 -33.81756 -33.25723 -31.40769 -30.48520 -29.40033 -28.36428 -27.90974 -27.23243 -24.71302 -23.52603 -22.40867 -21.66414 -20.63738 -20.06738 -19.58763 -19.27256 -17.63025 -16.73987 -16.44914 -15.77489 -15.41813 -15.28773 -14.87936 -14.38253 -14.32420 -14.25942 -14.09303 -13.26798 -13.07629 -13.04159 -12.81598 -12.47571 -12.43741 -12.13933 -11.82823 -11.58606 -11.42764 -11.22138 -11.13089 -11.08482 -10.80563 -10.65893 -10.44250 -10.12112 -10.06425 -9.81523 -9.64818 -9.18796 -8.82399 -8.43819 -7.69201 -7.03447 -6.43194 -6.39635 -3.92864 1.99124 2.42784 2.64793 2.71513 3.14282 3.22740 3.29351 3.53423 3.71466 4.15243 4.26636 4.31955 4.34686 4.55603 4.64844 4.82151 4.83746 4.88870 5.23253 5.31156 5.40402 5.44347 5.56070 5.59880 5.66860 5.69326 5.74296 5.89135 5.99243 6.21574 6.25663 6.39623 6.47236 6.55353 6.72228 6.86491 7.19285 7.22124 7.25674 7.40250 7.47224 7.55899 7.72008 7.81052 8.10252 8.26035 8.38942 8.73716 9.05860 9.19916 9.25750 10.59109 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.005262 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.821066 B = 5320.161860 C = 7440.157677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.417 4.417 8 H 0.076 0.924 9 C 0.028 3.972 10 C -0.080 4.080 11 N -0.592 5.592 12 H 0.393 0.607 13 C 0.086 3.914 14 C -0.154 4.154 15 C -0.115 4.115 16 C -0.178 4.178 17 C 0.045 3.955 18 C -0.160 4.160 19 C 0.102 3.898 20 N -0.308 5.308 21 N -0.377 5.377 22 C 0.137 3.863 23 H 0.113 0.887 24 C -0.167 4.167 25 C 0.043 3.957 26 O -0.368 6.368 27 C 0.036 3.964 28 C 0.046 3.954 29 C -0.112 4.112 30 H 0.270 0.730 31 H 0.174 0.826 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.185 0.815 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -7.032 1.151 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.148 4.148 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.451 4.451 8 H 0.094 0.906 9 C 0.023 3.977 10 C -0.204 4.204 11 N -0.193 5.193 12 H 0.227 0.773 13 C -0.025 4.025 14 C -0.176 4.176 15 C -0.134 4.134 16 C -0.199 4.199 17 C 0.043 3.957 18 C -0.171 4.171 19 C -0.085 4.085 20 N -0.127 5.127 21 N -0.161 5.161 22 C 0.033 3.967 23 H 0.131 0.869 24 C -0.206 4.206 25 C -0.033 4.033 26 O -0.285 6.285 27 C -0.042 4.042 28 C -0.098 4.098 29 C -0.119 4.119 30 H 0.081 0.919 31 H 0.191 0.809 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.202 0.798 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.688 -5.730 1.258 13.078 hybrid contribution -0.911 -0.022 -0.186 0.930 sum 10.777 -5.752 1.072 12.263 Atomic orbital electron populations 1.69695 1.06930 1.27720 1.42440 1.25568 0.94721 1.00203 0.94322 0.86369 0.80039 0.81691 0.78945 1.19832 1.19270 1.20897 1.18756 0.94008 0.88660 1.43659 0.90612 1.17971 0.91675 0.89757 0.98343 1.22693 1.00396 0.82448 1.14881 1.41456 1.11350 1.08601 1.57924 0.77350 1.18141 0.89020 0.92671 1.02695 1.19808 0.97909 0.92282 1.07569 1.20289 0.92906 0.98037 1.02208 1.20533 0.98643 0.92454 1.08273 1.17350 0.90343 0.90896 0.97086 1.18833 0.93236 0.99168 1.05848 1.24009 0.94499 0.92537 0.97482 1.77214 1.03262 1.17986 1.14265 1.48194 1.09779 1.18589 1.39522 1.22427 0.77550 1.02260 0.94460 0.86923 1.23420 0.98506 0.99719 0.98964 1.23465 1.01379 0.95931 0.82565 1.89182 1.28193 1.75821 1.35348 1.23838 0.84559 0.99911 0.95933 1.22247 0.92385 0.93407 1.01769 1.19438 0.92251 0.95361 1.04851 0.91941 0.80910 0.88291 0.87614 0.87865 0.79773 0.89372 0.89297 0.88590 0.91767 0.90615 0.87484 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.85 10.79 55.54 0.60 -21.25 16 2 C 0.06 1.59 5.47 -17.33 -0.09 1.50 16 3 Si 0.90 20.31 29.56 -169.99 -5.02 15.28 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.42 -10.97 7.92 -38.02 -0.30 -11.27 16 8 H 0.08 2.00 5.44 -52.48 -0.29 1.71 16 9 C 0.03 0.72 5.98 -104.83 -0.63 0.09 16 10 C -0.08 -1.98 10.77 -15.60 -0.17 -2.15 16 11 N -0.59 -12.55 5.99 -9.81 -0.06 -12.61 16 12 H 0.39 6.83 8.96 -40.82 -0.37 6.46 16 13 C 0.09 1.86 7.23 -83.92 -0.61 1.25 16 14 C -0.15 -2.86 10.06 -39.32 -0.40 -3.25 16 15 C -0.12 -1.99 10.00 -39.62 -0.40 -2.39 16 16 C -0.18 -3.24 9.75 -39.21 -0.38 -3.62 16 17 C 0.05 0.94 5.75 -104.71 -0.60 0.34 16 18 C -0.16 -3.12 4.65 -105.35 -0.49 -3.61 16 19 C 0.10 2.06 9.24 -17.04 -0.16 1.91 16 20 N -0.31 -5.94 12.54 30.82 0.39 -5.55 16 21 N -0.38 -6.08 3.51 -53.06 -0.19 -6.27 16 22 C 0.14 1.69 4.24 -66.36 -0.28 1.41 16 23 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 24 C -0.17 -1.67 6.88 -25.16 -0.17 -1.84 16 25 C 0.04 0.39 7.63 37.93 0.29 0.68 16 26 O -0.37 -4.18 11.65 -35.23 -0.41 -4.59 16 27 C 0.04 0.40 7.18 37.93 0.27 0.67 16 28 C 0.05 0.76 10.40 -16.85 -0.18 0.58 16 29 C -0.11 -2.64 6.18 -104.66 -0.65 -3.28 16 30 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.17 4.42 6.35 -52.49 -0.33 4.08 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.19 3.84 7.99 -52.49 -0.42 3.42 16 36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.09 0.97 7.96 -51.93 -0.41 0.55 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.85 5.89 -51.93 -0.31 0.54 16 41 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.17 2.26 6.80 -52.49 -0.36 1.90 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -29.87 347.27 -9.39 -39.27 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.00 Total: 13.48 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -4.94 Total: -22.99 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.74 Total: -45.68 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.41 Total: -4.59 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.87 -9.39 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240640846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.023 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds