Wall clock time and date at job start Tue Mar 31 2020 13:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86800 * 120.00336 * 2 1 4 4 H 1.48498 * 109.46968 * 240.00085 * 3 2 1 5 5 H 1.48498 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47170 * 119.99931 * 3 2 1 7 7 C 1.39675 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.40953 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.38988 * 126.92767 * 338.52237 * 9 7 2 11 11 N 1.35612 * 109.23377 * 179.86150 * 10 9 7 12 12 H 0.96998 * 124.70583 * 180.15999 * 11 10 9 13 13 C 1.38170 * 110.59843 * 0.41589 * 11 10 9 14 14 C 1.39175 * 132.73840 * 179.77201 * 13 11 10 15 15 C 1.37989 * 120.22867 * 179.97438 * 14 13 11 16 16 C 1.38377 * 120.76375 * 359.97438 * 15 14 13 17 17 C 1.39095 * 120.11059 * 0.06395 * 16 15 14 18 18 C 1.48290 * 120.27500 * 179.97438 * 17 16 15 19 19 C 1.40927 * 126.23771 * 123.40000 * 18 17 16 20 20 N 1.30652 * 108.08929 * 179.87718 * 19 18 17 21 21 N 1.40004 * 108.55570 * 0.38999 * 20 19 18 22 22 C 1.46501 * 125.87914 * 179.73516 * 21 20 19 23 23 H 1.08997 * 110.43784 * 23.92192 * 22 21 20 24 24 C 1.54818 * 110.48444 * 261.23903 * 22 21 20 25 25 C 1.54992 * 102.09397 * 220.44454 * 24 22 21 26 26 O 1.44385 * 103.48920 * 37.02044 * 25 24 22 27 27 C 1.43739 * 106.97528 * 319.94136 * 26 25 24 28 28 C 1.34807 * 108.23905 * 359.74855 * 21 20 19 29 29 C 1.40183 * 119.44834 * 359.92011 * 17 16 15 30 30 H 0.97002 * 119.99595 * 0.02562 * 1 2 3 31 31 H 1.08003 * 125.38325 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.88048 * 359.95108 * 14 13 11 33 33 H 1.08007 * 119.61311 * 179.97438 * 15 14 13 34 34 H 1.08006 * 119.94427 * 180.02562 * 16 15 14 35 35 H 1.07995 * 125.95085 * 0.02562 * 19 18 17 36 36 H 1.08996 * 110.90686 * 338.64059 * 24 22 21 37 37 H 1.08999 * 110.90553 * 102.24676 * 24 22 21 38 38 H 1.08999 * 110.62035 * 278.52521 * 25 24 22 39 39 H 1.08996 * 110.75451 * 155.58962 * 25 24 22 40 40 H 1.09000 * 109.88004 * 267.08432 * 27 26 25 41 41 H 1.09006 * 110.00083 * 146.00568 * 27 26 25 42 42 H 1.07995 * 126.20490 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6963 -1.2125 5 1 1.2800 2.7464 0.0006 6 1 3.0987 1.6963 1.2126 7 6 2.0091 -1.2097 0.0005 8 1 3.0891 -1.2097 0.0010 9 6 1.3044 -2.4303 0.0005 10 6 -0.0087 -2.6365 0.4069 11 7 -0.3235 -3.9466 0.2533 12 1 -1.1857 -4.3361 0.4671 13 6 0.7560 -4.6507 -0.2447 14 6 0.9416 -5.9920 -0.5665 15 6 2.1555 -6.4269 -1.0579 16 6 3.2039 -5.5421 -1.2389 17 6 3.0439 -4.1968 -0.9240 18 6 4.1651 -3.2455 -1.1160 19 6 4.1383 -2.0729 -1.8973 20 7 5.3113 -1.5036 -1.8148 21 7 6.1300 -2.2870 -0.9925 22 6 7.5250 -2.0017 -0.6477 23 1 7.7308 -0.9358 -0.7453 24 6 8.4835 -2.8257 -1.5416 25 6 9.5766 -3.2594 -0.5321 26 8 8.8344 -3.5115 0.6805 27 6 7.8361 -2.4824 0.7830 28 6 5.4137 -3.3492 -0.5730 29 6 1.8135 -3.7475 -0.4247 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6741 -1.8733 0.7828 32 1 0.1329 -6.6947 -0.4308 33 1 2.2887 -7.4701 -1.3040 34 1 4.1482 -5.8969 -1.6248 35 1 3.2943 -1.7074 -2.4633 36 1 7.9747 -3.6938 -1.9607 37 1 8.9075 -2.2060 -2.3317 38 1 10.2989 -2.4573 -0.3802 39 1 10.0775 -4.1662 -0.8710 40 1 8.2186 -1.6529 1.3777 41 1 6.9333 -2.8834 1.2438 42 1 5.7640 -4.1392 0.0747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240640848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:26 Heat of formation + Delta-G solvation = 91.036126 kcal Electronic energy + Delta-G solvation = -26941.033617 eV Core-core repulsion = 23274.062566 eV Total energy + Delta-G solvation = -3666.971051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.94681 -39.63609 -39.07371 -35.73624 -33.78702 -33.23830 -31.38594 -30.54899 -29.37365 -28.35560 -27.88630 -27.20563 -24.68433 -23.32789 -22.49979 -21.63597 -20.64109 -20.11561 -19.54688 -19.25746 -17.56379 -16.64524 -16.36139 -15.81345 -15.63243 -15.22580 -14.89977 -14.54956 -14.27979 -14.14080 -13.84696 -13.27642 -13.04910 -13.02014 -12.82730 -12.44848 -12.26736 -12.12070 -11.84578 -11.66038 -11.43323 -11.21069 -11.18587 -11.07965 -10.78695 -10.64904 -10.42476 -10.08641 -10.03413 -9.80022 -9.62722 -9.15492 -8.78016 -8.40997 -7.66530 -7.01033 -6.41615 -6.37458 -3.91289 2.02153 2.45210 2.67557 2.76785 3.17106 3.21731 3.28678 3.55982 3.61429 4.16481 4.28030 4.28249 4.42878 4.57651 4.73446 4.75121 4.84674 4.91850 5.21084 5.37142 5.41121 5.42492 5.51598 5.61404 5.65222 5.72940 5.77251 5.93375 6.02329 6.25050 6.29441 6.50091 6.51157 6.58298 6.74785 6.89054 7.21543 7.24915 7.28084 7.42485 7.49696 7.58453 7.74508 7.82963 8.12410 8.29186 8.40742 8.75494 9.07502 9.21471 9.27504 10.60676 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.005282 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.806008 B = 5299.410843 C = 7409.493663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.418 4.418 8 H 0.075 0.925 9 C 0.028 3.972 10 C -0.080 4.080 11 N -0.593 5.593 12 H 0.393 0.607 13 C 0.085 3.915 14 C -0.154 4.154 15 C -0.115 4.115 16 C -0.178 4.178 17 C 0.045 3.955 18 C -0.162 4.162 19 C 0.103 3.897 20 N -0.310 5.310 21 N -0.379 5.379 22 C 0.136 3.864 23 H 0.113 0.887 24 C -0.166 4.166 25 C 0.047 3.953 26 O -0.371 6.371 27 C 0.035 3.965 28 C 0.050 3.950 29 C -0.112 4.112 30 H 0.270 0.730 31 H 0.174 0.826 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.185 0.815 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.956 -5.774 -1.151 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.148 4.148 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.451 4.451 8 H 0.093 0.907 9 C 0.023 3.977 10 C -0.204 4.204 11 N -0.194 5.194 12 H 0.226 0.774 13 C -0.025 4.025 14 C -0.176 4.176 15 C -0.134 4.134 16 C -0.198 4.198 17 C 0.044 3.956 18 C -0.173 4.173 19 C -0.084 4.084 20 N -0.130 5.130 21 N -0.162 5.162 22 C 0.033 3.967 23 H 0.131 0.869 24 C -0.205 4.205 25 C -0.030 4.030 26 O -0.290 6.290 27 C -0.043 4.043 28 C -0.093 4.093 29 C -0.119 4.119 30 H 0.081 0.919 31 H 0.191 0.809 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.202 0.798 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.562 -4.656 -1.276 13.458 hybrid contribution -0.751 0.214 0.224 0.812 sum 11.811 -4.443 -1.052 12.663 Atomic orbital electron populations 1.69689 1.06921 1.27786 1.42435 1.25560 0.94719 1.00163 0.94335 0.86454 0.79769 0.81354 0.79660 1.19065 1.20946 1.19819 1.18713 0.93955 0.88673 1.43761 0.90700 1.17963 0.91719 0.89764 0.98294 1.22685 1.00388 0.82499 1.14845 1.41448 1.11193 1.08604 1.58118 0.77366 1.18144 0.88992 0.92634 1.02762 1.19805 0.97973 0.92294 1.07529 1.20290 0.92983 0.98053 1.02092 1.20544 0.98648 0.92477 1.08154 1.17348 0.90327 0.90906 0.97053 1.18835 0.93327 0.99277 1.05854 1.23992 0.94516 0.92496 0.97435 1.77198 1.03291 1.17926 1.14535 1.48210 1.09531 1.18751 1.39680 1.22448 0.77993 1.01837 0.94456 0.86885 1.23623 0.96706 1.01300 0.98844 1.23573 0.93968 1.01714 0.83721 1.88935 1.47668 1.49636 1.42745 1.23607 0.93564 0.92153 0.95016 1.22293 0.92189 0.93321 1.01529 1.19441 0.92302 0.95338 1.04806 0.91909 0.80933 0.88299 0.87609 0.87832 0.79843 0.89376 0.89120 0.91691 0.88403 0.90466 0.88132 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.96 10.79 55.54 0.60 -21.36 16 2 C 0.06 1.61 5.47 -17.34 -0.09 1.51 16 3 Si 0.90 20.28 29.56 -169.99 -5.02 15.26 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.42 -11.04 7.94 -38.02 -0.30 -11.34 16 8 H 0.07 1.98 5.45 -52.49 -0.29 1.70 16 9 C 0.03 0.73 5.98 -104.83 -0.63 0.10 16 10 C -0.08 -2.00 10.77 -15.60 -0.17 -2.16 16 11 N -0.59 -12.68 5.99 -9.80 -0.06 -12.74 16 12 H 0.39 6.90 8.96 -40.82 -0.37 6.53 16 13 C 0.09 1.88 7.23 -83.91 -0.61 1.27 16 14 C -0.15 -2.91 10.06 -39.32 -0.40 -3.30 16 15 C -0.11 -2.03 10.00 -39.62 -0.40 -2.42 16 16 C -0.18 -3.31 9.76 -39.21 -0.38 -3.69 16 17 C 0.05 0.97 5.75 -104.71 -0.60 0.36 16 18 C -0.16 -3.23 4.64 -105.35 -0.49 -3.72 16 19 C 0.10 2.11 9.26 -17.04 -0.16 1.96 16 20 N -0.31 -6.05 12.54 30.82 0.39 -5.67 16 21 N -0.38 -6.22 3.55 -53.09 -0.19 -6.41 16 22 C 0.14 1.67 4.14 -66.40 -0.28 1.39 16 23 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 24 C -0.17 -1.63 6.88 -24.72 -0.17 -1.80 16 25 C 0.05 0.40 7.72 38.21 0.29 0.69 16 26 O -0.37 -4.30 11.52 -35.23 -0.41 -4.71 16 27 C 0.03 0.39 7.18 37.73 0.27 0.66 16 28 C 0.05 0.87 10.10 -16.85 -0.17 0.70 16 29 C -0.11 -2.67 6.18 -104.66 -0.65 -3.31 16 30 H 0.27 6.67 8.30 -40.82 -0.34 6.34 16 31 H 0.17 4.44 6.35 -52.48 -0.33 4.10 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.18 3.89 8.00 -52.49 -0.42 3.47 16 36 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.27 6.40 -51.93 -0.33 0.93 16 42 H 0.17 2.48 7.47 -52.49 -0.39 2.09 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -30.20 348.21 -9.43 -39.62 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.07 Total: 13.86 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -4.92 Total: -23.12 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.74 Total: -46.17 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.41 Total: -4.71 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.20 -9.43 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240640848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.659 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds