Wall clock time and date at job start Tue Mar 31 2020 13:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86800 * 120.00336 * 2 1 4 4 H 1.48498 * 109.46968 * 240.00085 * 3 2 1 5 5 H 1.48498 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47170 * 119.99931 * 3 2 1 7 7 C 1.39675 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.40953 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.38988 * 126.92767 * 338.52237 * 9 7 2 11 11 N 1.35612 * 109.23377 * 179.86150 * 10 9 7 12 12 H 0.96998 * 124.70583 * 180.15999 * 11 10 9 13 13 C 1.38170 * 110.59843 * 0.41589 * 11 10 9 14 14 C 1.39175 * 132.73840 * 179.77201 * 13 11 10 15 15 C 1.37989 * 120.22867 * 179.97438 * 14 13 11 16 16 C 1.38377 * 120.76375 * 359.97438 * 15 14 13 17 17 C 1.39095 * 120.11059 * 0.06395 * 16 15 14 18 18 C 1.48290 * 120.27500 * 179.97438 * 17 16 15 19 19 C 1.40927 * 126.23771 * 123.40000 * 18 17 16 20 20 N 1.30652 * 108.08929 * 179.87718 * 19 18 17 21 21 N 1.40004 * 108.55570 * 0.38999 * 20 19 18 22 22 C 1.46501 * 125.87914 * 179.73516 * 21 20 19 23 23 H 1.08997 * 110.43784 * 23.92192 * 22 21 20 24 24 C 1.54818 * 110.48444 * 261.23903 * 22 21 20 25 25 C 1.54992 * 102.09397 * 220.44454 * 24 22 21 26 26 O 1.44385 * 103.48920 * 37.02044 * 25 24 22 27 27 C 1.43739 * 106.97528 * 319.94136 * 26 25 24 28 28 C 1.34807 * 108.23905 * 359.74855 * 21 20 19 29 29 C 1.40183 * 119.44834 * 359.92011 * 17 16 15 30 30 H 0.97002 * 119.99595 * 0.02562 * 1 2 3 31 31 H 1.08003 * 125.38325 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.88048 * 359.95108 * 14 13 11 33 33 H 1.08007 * 119.61311 * 179.97438 * 15 14 13 34 34 H 1.08006 * 119.94427 * 180.02562 * 16 15 14 35 35 H 1.07995 * 125.95085 * 0.02562 * 19 18 17 36 36 H 1.08996 * 110.90686 * 338.64059 * 24 22 21 37 37 H 1.08999 * 110.90553 * 102.24676 * 24 22 21 38 38 H 1.08999 * 110.62035 * 278.52521 * 25 24 22 39 39 H 1.08996 * 110.75451 * 155.58962 * 25 24 22 40 40 H 1.09000 * 109.88004 * 267.08432 * 27 26 25 41 41 H 1.09006 * 110.00083 * 146.00568 * 27 26 25 42 42 H 1.07995 * 126.20490 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0986 1.6963 -1.2125 5 1 1.2800 2.7464 0.0006 6 1 3.0987 1.6963 1.2126 7 6 2.0091 -1.2097 0.0005 8 1 3.0891 -1.2097 0.0010 9 6 1.3044 -2.4303 0.0005 10 6 -0.0087 -2.6365 0.4069 11 7 -0.3235 -3.9466 0.2533 12 1 -1.1857 -4.3361 0.4671 13 6 0.7560 -4.6507 -0.2447 14 6 0.9416 -5.9920 -0.5665 15 6 2.1555 -6.4269 -1.0579 16 6 3.2039 -5.5421 -1.2389 17 6 3.0439 -4.1968 -0.9240 18 6 4.1651 -3.2455 -1.1160 19 6 4.1383 -2.0729 -1.8973 20 7 5.3113 -1.5036 -1.8148 21 7 6.1300 -2.2870 -0.9925 22 6 7.5250 -2.0017 -0.6477 23 1 7.7308 -0.9358 -0.7453 24 6 8.4835 -2.8257 -1.5416 25 6 9.5766 -3.2594 -0.5321 26 8 8.8344 -3.5115 0.6805 27 6 7.8361 -2.4824 0.7830 28 6 5.4137 -3.3492 -0.5730 29 6 1.8135 -3.7475 -0.4247 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6741 -1.8733 0.7828 32 1 0.1329 -6.6947 -0.4308 33 1 2.2887 -7.4701 -1.3040 34 1 4.1482 -5.8969 -1.6248 35 1 3.2943 -1.7074 -2.4633 36 1 7.9747 -3.6938 -1.9607 37 1 8.9075 -2.2060 -2.3317 38 1 10.2989 -2.4573 -0.3802 39 1 10.0775 -4.1662 -0.8710 40 1 8.2186 -1.6529 1.3777 41 1 6.9333 -2.8834 1.2438 42 1 5.7640 -4.1392 0.0747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240640848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:25 Heat of formation + Delta-G solvation = 73.537017 kcal Electronic energy + Delta-G solvation = -26941.792436 eV Core-core repulsion = 23274.062566 eV Total energy + Delta-G solvation = -3667.729870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28478 -41.21083 -40.09311 -37.31470 -35.41151 -34.62410 -32.90486 -31.58983 -30.97031 -29.57523 -29.44040 -28.73099 -26.50028 -24.45936 -23.48162 -23.05829 -22.14309 -21.69252 -21.06390 -20.77595 -18.95740 -17.92478 -17.53081 -17.32548 -16.93090 -16.64040 -16.05918 -15.94601 -15.89781 -15.51353 -15.15357 -14.71373 -14.60207 -14.30379 -14.29655 -14.07099 -13.52712 -13.31266 -13.09916 -13.01260 -12.91525 -12.75851 -12.52522 -12.43558 -12.16023 -12.07732 -11.99013 -11.68620 -11.63408 -11.29874 -11.01888 -10.83403 -10.21593 -9.98796 -9.21895 -8.64924 -8.33892 -8.10923 -5.86725 0.48718 1.01353 1.11524 1.35184 1.37194 1.46230 1.54699 2.01486 2.30182 2.39720 2.81113 2.95167 3.21635 3.37442 3.53014 3.68493 3.83548 3.91453 4.00563 4.12287 4.21077 4.32043 4.43151 4.55304 4.59439 4.61219 4.78066 4.79865 4.82803 4.86585 4.92689 4.97055 5.03219 5.21495 5.33741 5.46120 5.53743 5.71406 5.73445 5.75056 5.95913 6.06082 6.12435 6.22350 6.35520 6.65916 6.82373 6.90289 7.24778 7.31258 7.46959 8.68973 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.005282 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.806008 B = 5299.410843 C = 7409.493663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.432 4.432 8 H 0.065 0.935 9 C -0.009 4.009 10 C -0.091 4.091 11 N -0.588 5.588 12 H 0.410 0.590 13 C 0.075 3.925 14 C -0.156 4.156 15 C -0.102 4.102 16 C -0.170 4.170 17 C 0.029 3.971 18 C -0.188 4.188 19 C 0.084 3.916 20 N -0.327 5.327 21 N -0.366 5.366 22 C 0.122 3.878 23 H 0.122 0.878 24 C -0.158 4.158 25 C 0.049 3.951 26 O -0.388 6.388 27 C 0.040 3.960 28 C 0.067 3.933 29 C -0.149 4.149 30 H 0.272 0.728 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.374 -7.882 -1.272 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.216 4.216 11 N -0.192 5.192 12 H 0.246 0.754 13 C -0.036 4.036 14 C -0.178 4.178 15 C -0.121 4.121 16 C -0.190 4.190 17 C 0.027 3.973 18 C -0.200 4.200 19 C -0.102 4.102 20 N -0.148 5.148 21 N -0.149 5.149 22 C 0.020 3.980 23 H 0.140 0.860 24 C -0.196 4.196 25 C -0.027 4.027 26 O -0.307 6.307 27 C -0.038 4.038 28 C -0.079 4.079 29 C -0.155 4.155 30 H 0.083 0.917 31 H 0.175 0.825 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.148 0.852 35 H 0.180 0.820 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 14.981 -6.781 -1.401 16.504 hybrid contribution -1.355 0.679 0.228 1.532 sum 13.626 -6.102 -1.173 14.976 Atomic orbital electron populations 1.69771 1.07753 1.28339 1.43719 1.26175 0.95444 1.02553 0.94277 0.85609 0.78671 0.78484 0.79085 1.19608 1.19841 1.19810 1.18794 0.93580 0.89627 1.44574 0.91648 1.18312 0.92697 0.91025 0.99431 1.22437 1.00015 0.83796 1.15319 1.41262 1.12118 1.07462 1.58370 0.75447 1.18573 0.88471 0.93849 1.02657 1.20225 0.99614 0.91236 1.06680 1.20836 0.91726 0.99973 0.99533 1.20934 1.00170 0.91427 1.06512 1.17631 0.89946 0.92432 0.97245 1.18903 0.94325 0.99522 1.07202 1.23721 0.94563 0.93418 0.98463 1.77098 1.03375 1.18656 1.15683 1.48541 1.10623 1.17705 1.37995 1.22931 0.76051 1.03055 0.95980 0.86042 1.23585 0.96328 1.00544 0.99177 1.23778 0.93469 1.03443 0.81983 1.88921 1.47860 1.49845 1.44050 1.23545 0.93340 0.92649 0.94251 1.22550 0.91256 0.93611 1.00436 1.19691 0.94307 0.94835 1.06707 0.91743 0.82478 0.85039 0.83185 0.85166 0.82028 0.90637 0.87489 0.89471 0.86618 0.88627 0.89662 0.79114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.42 10.79 21.79 0.24 -47.19 16 2 C 0.02 1.21 5.47 85.15 0.47 1.67 16 3 Si 0.96 43.25 29.56 68.60 2.03 45.28 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.43 -24.06 7.94 23.28 0.18 -23.88 16 8 H 0.07 3.66 5.45 -2.91 -0.02 3.64 16 9 C -0.01 -0.50 5.98 -20.00 -0.12 -0.62 16 10 C -0.09 -4.74 10.77 84.29 0.91 -3.83 16 11 N -0.59 -25.60 5.99 -184.93 -1.11 -26.71 16 12 H 0.41 14.42 8.96 -92.71 -0.83 13.58 16 13 C 0.07 3.25 7.23 38.85 0.28 3.53 16 14 C -0.16 -5.43 10.06 22.44 0.23 -5.21 16 15 C -0.10 -3.18 10.00 22.24 0.22 -2.96 16 16 C -0.17 -5.90 9.76 22.51 0.22 -5.68 16 17 C 0.03 1.24 5.75 -19.92 -0.11 1.12 16 18 C -0.19 -7.63 4.64 -20.34 -0.09 -7.72 16 19 C 0.08 3.62 9.26 85.53 0.79 4.41 16 20 N -0.33 -13.00 12.54 -56.42 -0.71 -13.70 16 21 N -0.37 -11.76 3.55 -321.89 -1.14 -12.91 16 22 C 0.12 2.75 4.14 45.98 0.19 2.94 16 23 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 24 C -0.16 -2.68 6.88 31.90 0.22 -2.46 16 25 C 0.05 0.67 7.72 72.66 0.56 1.23 16 26 O -0.39 -7.91 11.52 -148.98 -1.72 -9.63 16 27 C 0.04 0.83 7.18 72.35 0.52 1.35 16 28 C 0.07 2.26 10.10 83.84 0.85 3.10 16 29 C -0.15 -7.25 6.18 -19.89 -0.12 -7.37 16 30 H 0.27 14.00 8.30 -92.71 -0.77 13.23 16 31 H 0.16 8.57 6.35 -2.91 -0.02 8.56 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.16 7.47 8.00 -2.91 -0.02 7.44 16 36 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 2.03 6.40 -2.38 -0.02 2.01 16 42 H 0.19 5.33 7.47 -2.91 -0.02 5.31 16 Total: -1.00 -68.70 348.21 3.01 -65.69 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: 0.24 Total: 39.53 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 5.18 Total: -40.36 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -2.72 Total: -100.51 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -1.72 Total: -9.63 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.70 3.01 -65.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240640848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.226 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds