Wall clock time and date at job start Tue Mar 31 2020 13:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39599 * 120.46009 * 342.07227 * 3 2 1 5 5 C 1.37693 * 120.18375 * 180.25711 * 4 3 2 6 6 C 1.39812 * 121.17003 * 359.48667 * 5 4 3 7 7 C 1.48352 * 119.53277 * 180.23365 * 6 5 4 8 8 C 1.40907 * 126.23639 * 180.02562 * 7 6 5 9 9 N 1.30650 * 108.08106 * 179.97438 * 8 7 6 10 10 N 1.39999 * 108.54852 * 0.02562 * 9 8 7 11 11 C 1.46504 * 125.87998 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.48135 * 64.94260 * 11 10 9 13 13 C 1.53098 * 109.47704 * 304.91509 * 11 10 9 14 14 C 1.53175 * 109.16281 * 182.41018 * 13 11 10 15 15 C 1.53179 * 109.03923 * 56.97563 * 14 13 11 16 16 C 1.53090 * 109.16551 * 303.02227 * 15 14 13 17 17 O 1.42902 * 109.48259 * 184.97114 * 11 10 9 18 18 C 1.34760 * 108.24429 * 359.76433 * 10 9 8 19 19 C 1.38603 * 120.93259 * 0.26450 * 6 5 4 20 20 C 1.40574 * 119.73727 * 359.97438 * 19 6 5 21 21 C 1.40850 * 120.55108 * 179.97438 * 20 19 6 22 22 H 1.08007 * 119.99632 * 155.85540 * 21 20 19 23 23 C 1.40227 * 120.00254 * 335.85125 * 21 20 19 24 24 N 1.30660 * 119.99932 * 341.82739 * 23 21 20 25 25 Si 1.86800 * 119.99750 * 161.82743 * 23 21 20 26 26 H 1.48496 * 109.47425 * 90.00377 * 25 23 21 27 27 H 1.48508 * 109.46926 * 210.00155 * 25 23 21 28 28 H 1.48492 * 109.47293 * 329.99822 * 25 23 21 29 29 H 1.08005 * 119.91115 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.41486 * 179.77221 * 5 4 3 31 31 H 1.08004 * 125.96218 * 359.97438 * 8 7 6 32 32 H 1.08998 * 109.52122 * 302.31369 * 13 11 10 33 33 H 1.08996 * 109.52317 * 62.49984 * 13 11 10 34 34 H 1.09005 * 109.54421 * 297.11437 * 14 13 11 35 35 H 1.08997 * 109.54570 * 176.84871 * 14 13 11 36 36 H 1.08997 * 109.52742 * 183.11247 * 15 14 13 37 37 H 1.09006 * 109.57232 * 62.95922 * 15 14 13 38 38 H 1.08994 * 109.48088 * 297.62240 * 16 15 14 39 39 H 1.08995 * 109.48190 * 177.58366 * 16 15 14 40 40 H 1.07995 * 126.20287 * 180.22882 * 18 10 9 41 41 H 1.08003 * 120.12643 * 179.97438 * 19 6 5 42 42 H 0.97003 * 119.99786 * 185.04415 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2762 -1.1439 0.3704 5 6 4.6531 -1.1354 0.3734 6 6 5.3704 0.0048 -0.0008 7 6 6.8536 -0.0278 0.0108 8 6 7.7128 1.0334 -0.3369 9 7 8.9444 0.6196 -0.1998 10 7 8.9213 -0.7105 0.2364 11 6 10.0940 -1.5443 0.5117 12 1 10.6445 -1.1300 1.3563 13 6 10.9996 -1.5751 -0.7224 14 6 12.1921 -2.4965 -0.4481 15 6 11.6727 -3.8879 -0.0733 16 6 10.7412 -3.7678 1.1357 17 8 9.6713 -2.8732 0.8239 18 6 7.6347 -1.0901 0.3649 19 6 4.7155 1.1654 -0.3819 20 6 3.3103 1.2011 -0.3943 21 6 2.6272 2.3716 -0.7781 22 1 1.6191 2.3077 -1.1603 23 6 3.2560 3.6198 -0.6638 24 7 4.3029 3.7559 0.1060 25 14 2.5968 5.0879 -1.6123 26 1 1.5881 5.7986 -0.7861 27 1 3.7140 6.0122 -1.9329 28 1 1.9644 4.6201 -2.8718 29 1 2.7426 -2.0375 0.6590 30 1 5.1884 -2.0266 0.6657 31 1 7.4067 2.0174 -0.6604 32 1 10.4377 -1.9514 -1.5772 33 1 11.3586 -0.5684 -0.9359 34 1 12.7823 -2.0937 0.3751 35 1 12.8116 -2.5671 -1.3422 36 1 12.5131 -4.5352 0.1773 37 1 11.1247 -4.3120 -0.9147 38 1 11.3002 -3.3827 1.9884 39 1 10.3348 -4.7491 1.3803 40 1 7.2848 -2.0595 0.6876 41 1 5.2827 2.0388 -0.6681 42 1 4.6937 4.6331 0.2426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240675880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:13 Heat of formation + Delta-G solvation = 70.181399 kcal Electronic energy + Delta-G solvation = -25756.405890 eV Core-core repulsion = 22088.530510 eV Total energy + Delta-G solvation = -3667.875380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.98689 -39.45045 -37.51248 -35.05885 -34.16136 -34.08023 -33.08290 -31.10338 -30.02909 -29.69729 -27.89260 -25.72570 -25.14757 -23.99803 -22.40382 -21.57563 -20.78191 -19.91618 -19.78631 -17.72813 -17.41742 -16.92920 -16.44344 -16.01251 -15.33916 -15.05353 -14.74194 -14.53839 -14.03647 -13.91935 -13.74262 -13.17212 -13.12296 -13.03137 -12.74736 -12.58151 -12.38238 -12.05447 -11.87575 -11.68834 -11.58957 -11.46551 -11.40355 -11.23704 -11.11749 -10.93489 -10.85641 -10.59428 -10.42183 -10.09670 -9.85846 -9.63919 -9.45305 -9.06748 -8.61920 -7.65149 -7.10382 -6.80266 -4.62864 1.86657 2.21300 2.38423 2.74020 2.97074 3.01469 3.10068 3.42225 3.57340 3.75660 4.01156 4.33796 4.38543 4.43453 4.46942 4.48030 4.53408 4.70240 4.93120 5.12273 5.21702 5.29749 5.31748 5.39460 5.49967 5.52060 5.58830 5.60040 5.72377 5.86860 5.89799 6.01279 6.22140 6.28765 6.45872 6.59121 6.79995 6.98525 7.02095 7.12426 7.29008 7.34401 7.61670 7.78571 7.89097 7.97500 8.10978 8.33273 8.53527 8.66072 8.92536 9.84167 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003034 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.974774 B = 9227.709426 C =10662.353925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.302 3.698 3 C -0.194 4.194 4 C -0.026 4.026 5 C -0.242 4.242 6 C 0.031 3.969 7 C -0.176 4.176 8 C 0.073 3.927 9 N -0.301 5.301 10 N -0.383 5.383 11 C 0.349 3.651 12 H 0.080 0.920 13 C -0.155 4.155 14 C -0.120 4.120 15 C -0.161 4.161 16 C 0.073 3.927 17 O -0.387 6.387 18 C 0.074 3.926 19 C -0.155 4.155 20 C 0.153 3.847 21 C -0.433 4.433 22 H 0.085 0.915 23 C 0.078 3.922 24 N -0.764 5.764 25 Si 0.912 3.088 26 H -0.266 1.266 27 H -0.271 1.271 28 H -0.256 1.256 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.174 0.826 41 H 0.128 0.872 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.010 -8.911 0.389 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.007 4.007 3 C -0.200 4.200 4 C -0.047 4.047 5 C -0.262 4.262 6 C 0.029 3.971 7 C -0.187 4.187 8 C -0.113 4.113 9 N -0.123 5.123 10 N -0.166 5.166 11 C 0.208 3.792 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.158 4.158 15 C -0.199 4.199 16 C -0.004 4.004 17 O -0.305 6.305 18 C -0.071 4.071 19 C -0.174 4.174 20 C 0.148 3.852 21 C -0.461 4.461 22 H 0.103 0.897 23 C -0.145 4.145 24 N -0.387 5.387 25 Si 0.735 3.265 26 H -0.191 1.191 27 H -0.196 1.196 28 H -0.180 1.180 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.191 0.809 41 H 0.146 0.854 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.647 -8.599 0.377 20.538 hybrid contribution -0.423 0.509 -0.168 0.682 sum 18.224 -8.090 0.210 19.940 Atomic orbital electron populations 1.81004 1.12831 1.10820 1.14940 1.25849 0.92784 0.91030 0.91061 1.16959 0.83119 0.98285 1.21637 1.20333 0.93590 0.94920 0.95881 1.20031 0.92956 0.97735 1.15460 1.17841 0.87932 0.94081 0.97225 1.19254 0.94376 0.93348 1.11746 1.24127 0.89138 1.00083 0.97978 1.77153 1.22050 0.90283 1.22775 1.48308 1.04641 1.09974 1.53702 1.21380 0.81781 0.79376 0.96685 0.90238 1.22415 0.96658 1.02028 0.98262 1.21608 0.97192 0.94580 1.02464 1.22267 1.00087 0.97901 0.99641 1.22639 0.88197 0.93399 0.96176 1.87781 1.33815 1.19339 1.89586 1.22471 0.83542 1.00219 1.00822 1.21221 0.93485 0.96583 1.06151 1.18309 0.91268 0.89680 0.85934 1.19738 1.01022 0.90529 1.34769 0.89714 1.26072 0.93533 1.01268 0.93581 1.69708 1.17029 1.26434 1.25490 0.86211 0.79583 0.79615 0.81083 1.19100 1.19555 1.17969 0.88463 0.88738 0.79390 0.90326 0.89299 0.91381 0.90655 0.90273 0.90583 0.92509 0.87750 0.80878 0.85398 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.75 18.54 41.84 0.78 -11.98 16 2 C 0.30 7.27 14.28 -22.47 -0.32 6.95 16 3 C -0.19 -4.54 5.95 -104.11 -0.62 -5.16 16 4 C -0.03 -0.55 9.74 -39.27 -0.38 -0.93 16 5 C -0.24 -4.84 9.50 -39.19 -0.37 -5.22 16 6 C 0.03 0.66 5.86 -105.01 -0.62 0.05 16 7 C -0.18 -3.31 6.03 -105.34 -0.64 -3.95 16 8 C 0.07 1.31 11.39 -17.04 -0.19 1.12 16 9 N -0.30 -5.11 12.38 30.81 0.38 -4.73 16 10 N -0.38 -5.92 3.67 -59.13 -0.22 -6.13 16 11 C 0.35 4.09 3.94 -3.99 -0.02 4.07 16 12 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 13 C -0.16 -1.52 5.60 -26.59 -0.15 -1.67 16 14 C -0.12 -0.80 6.03 -26.55 -0.16 -0.96 16 15 C -0.16 -0.96 6.14 -26.59 -0.16 -1.13 16 16 C 0.07 0.50 6.84 37.20 0.25 0.76 16 17 O -0.39 -4.27 9.56 -35.23 -0.34 -4.61 16 18 C 0.07 1.23 10.22 -16.88 -0.17 1.06 16 19 C -0.15 -3.55 8.21 -38.57 -0.32 -3.87 16 20 C 0.15 3.76 5.74 -104.68 -0.60 3.16 16 21 C -0.43 -10.72 8.58 -37.85 -0.32 -11.04 16 22 H 0.08 2.14 7.37 -52.48 -0.39 1.75 16 23 C 0.08 1.78 5.14 -17.30 -0.09 1.70 16 24 N -0.76 -17.46 10.96 55.56 0.61 -16.85 16 25 Si 0.91 17.42 29.60 -169.99 -5.03 12.39 16 26 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 27 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 28 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 29 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.09 1.65 6.90 -52.49 -0.36 1.29 16 31 H 0.19 3.16 7.30 -52.48 -0.38 2.78 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.17 2.59 6.94 -52.49 -0.36 2.23 16 41 H 0.13 2.93 5.08 -52.48 -0.27 2.67 16 42 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -27.88 358.44 -8.42 -36.30 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.12 Total: 5.28 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -4.88 Total: -15.07 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.55 Total: -39.69 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.34 Total: -4.61 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.88 -8.42 -36.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240675880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.485 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds