Wall clock time and date at job start Tue Mar 31 2020 13:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39078 * 120.56519 * 175.74691 * 3 2 1 5 5 C 1.39390 * 119.80812 * 179.97438 * 4 3 2 6 6 C 1.48029 * 119.50196 * 180.02562 * 5 4 3 7 7 C 1.41079 * 126.36423 * 359.68605 * 6 5 4 8 8 N 1.30552 * 108.11892 * 179.82088 * 7 6 5 9 9 N 1.39958 * 108.84860 * 0.44515 * 8 7 6 10 10 C 1.46492 * 125.81650 * 179.69621 * 9 8 7 11 11 H 1.08999 * 109.48551 * 64.99845 * 10 9 8 12 12 C 1.53096 * 109.48057 * 304.96382 * 10 9 8 13 13 C 1.53178 * 109.16371 * 182.40988 * 12 10 9 14 14 C 1.53173 * 109.03561 * 56.97904 * 13 12 10 15 15 C 1.53091 * 109.16970 * 303.02213 * 14 13 12 16 16 O 1.42900 * 109.41396 * 57.60335 * 15 14 13 17 17 C 1.34699 * 108.36476 * 359.71383 * 9 8 7 18 18 C 1.39996 * 120.99750 * 0.02562 * 5 4 3 19 19 C 1.35982 * 121.19221 * 359.68763 * 18 5 4 20 20 C 1.41056 * 120.11141 * 0.57124 * 19 18 5 21 21 C 1.40421 * 120.48794 * 179.73891 * 20 19 18 22 22 H 1.07999 * 119.99898 * 154.41764 * 21 20 19 23 23 C 1.40254 * 120.00156 * 334.41790 * 21 20 19 24 24 N 1.30664 * 119.99747 * 334.68065 * 23 21 20 25 25 Si 1.86798 * 120.00083 * 154.68377 * 23 21 20 26 26 H 1.48498 * 109.46874 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46857 * 299.99729 * 25 23 21 28 28 H 1.48496 * 109.47337 * 59.99658 * 25 23 21 29 29 H 1.08006 * 120.09888 * 359.96110 * 4 3 2 30 30 H 1.08006 * 125.93913 * 359.97204 * 7 6 5 31 31 H 1.08994 * 109.52260 * 302.31587 * 12 10 9 32 32 H 1.08998 * 109.51938 * 62.50548 * 12 10 9 33 33 H 1.09006 * 109.53995 * 297.11469 * 13 12 10 34 34 H 1.08994 * 109.54463 * 176.84771 * 13 12 10 35 35 H 1.09004 * 109.52403 * 183.11432 * 14 13 12 36 36 H 1.09002 * 109.57326 * 62.95730 * 14 13 12 37 37 H 1.09004 * 109.47502 * 297.62644 * 15 14 13 38 38 H 1.08997 * 109.48707 * 177.59390 * 15 14 13 39 39 H 1.08002 * 126.30154 * 179.97438 * 17 9 8 40 40 H 1.07995 * 119.39873 * 179.97438 * 18 5 4 41 41 H 1.08004 * 119.94119 * 180.28593 * 19 18 5 42 42 H 0.97008 * 120.00243 * 354.20050 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 1.1952 -0.0888 5 6 4.6685 1.1775 -0.0869 6 6 5.4139 2.4529 -0.1812 7 6 4.8536 3.7437 -0.2833 8 7 5.8310 4.6072 -0.3408 9 7 7.0476 3.9172 -0.2891 10 6 8.3800 4.5243 -0.3340 11 1 8.5300 5.1381 0.5542 12 6 8.5010 5.3983 -1.5851 13 6 9.9158 5.9811 -1.6565 14 6 10.9299 4.8332 -1.6490 15 6 10.7152 3.9810 -0.3955 16 8 9.3712 3.4958 -0.3754 17 6 6.7845 2.5998 -0.1915 18 6 5.3741 -0.0283 0.0028 19 6 4.7244 -1.2192 0.0972 20 6 3.3144 -1.2582 0.0940 21 6 2.6354 -2.4839 0.1856 22 1 1.6341 -2.5177 0.5889 23 6 3.2575 -3.6643 -0.2467 24 7 4.1994 -3.6129 -1.1509 25 14 2.7396 -5.3096 0.4701 26 1 3.5440 -6.3940 -0.1480 27 1 2.9640 -5.3027 1.9381 28 1 1.2994 -5.5400 0.1906 29 1 2.7452 2.1339 -0.1593 30 1 3.7993 3.9770 -0.3072 31 1 8.3111 4.7935 -2.4717 32 1 7.7749 6.2097 -1.5342 33 1 10.0884 6.6259 -0.7947 34 1 10.0261 6.5592 -2.5739 35 1 11.9410 5.2405 -1.6437 36 1 10.7901 4.2166 -2.5369 37 1 10.8958 4.5878 0.4919 38 1 11.4060 3.1379 -0.4062 39 1 7.5132 1.8049 -0.1326 40 1 6.4540 -0.0120 0.0016 41 1 5.2890 -2.1370 0.1700 42 1 4.4105 -2.7710 -1.5842 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240676888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:20 Heat of formation + Delta-G solvation = 62.612692 kcal Electronic energy + Delta-G solvation = -25587.384806 eV Core-core repulsion = 21919.181222 eV Total energy + Delta-G solvation = -3668.203584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.93726 -39.44597 -37.83164 -35.19066 -34.50364 -34.17191 -33.00858 -30.90460 -30.12006 -29.71113 -28.25670 -25.80645 -24.70590 -23.99726 -22.57034 -21.66466 -20.89410 -20.22100 -19.78607 -18.37881 -17.63809 -16.81677 -16.36109 -15.90896 -15.14271 -15.05669 -14.65749 -14.57568 -14.39108 -13.99618 -13.83457 -13.53984 -13.18048 -13.05019 -12.86575 -12.59676 -12.44394 -12.07166 -11.94348 -11.86659 -11.69052 -11.59578 -11.42659 -11.32084 -11.04181 -11.02304 -10.81156 -10.55618 -10.38665 -10.11297 -9.93122 -9.77306 -9.36588 -9.10044 -8.65868 -7.92494 -7.58164 -7.11961 -4.71740 2.01006 2.16747 2.21311 2.48200 3.01144 3.04358 3.23306 3.51716 3.56785 3.78835 3.87861 4.24517 4.32254 4.37413 4.42901 4.44871 4.46692 4.68181 4.91102 5.09729 5.15224 5.28194 5.29466 5.34592 5.36217 5.40151 5.49044 5.57958 5.70107 5.86421 5.88715 5.90611 6.02013 6.17675 6.30160 6.56351 6.71207 6.75396 7.01100 7.06018 7.23639 7.36037 7.48209 7.54774 7.66757 7.80060 7.92876 8.08739 8.34772 8.46182 8.78487 9.65158 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002771 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.846460 B =10100.763764 C =11413.958356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.300 3.700 3 C -0.188 4.188 4 C -0.002 4.002 5 C -0.159 4.159 6 C -0.143 4.143 7 C 0.049 3.951 8 N -0.300 5.300 9 N -0.378 5.378 10 C 0.350 3.650 11 H 0.079 0.921 12 C -0.155 4.155 13 C -0.120 4.120 14 C -0.161 4.161 15 C 0.073 3.927 16 O -0.387 6.387 17 C 0.045 3.955 18 C -0.043 4.043 19 C -0.214 4.214 20 C 0.129 3.871 21 C -0.473 4.473 22 H 0.085 0.915 23 C 0.037 3.963 24 N -0.762 5.762 25 Si 1.066 2.934 26 H -0.269 1.269 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.101 0.899 30 H 0.182 0.818 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.172 0.828 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.012 12.089 -0.097 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.023 4.023 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.137 4.137 8 N -0.122 5.122 9 N -0.162 5.162 10 C 0.208 3.792 11 H 0.097 0.903 12 C -0.194 4.194 13 C -0.158 4.158 14 C -0.199 4.199 15 C -0.004 4.004 16 O -0.305 6.305 17 C -0.099 4.099 18 C -0.063 4.063 19 C -0.234 4.234 20 C 0.123 3.877 21 C -0.499 4.499 22 H 0.103 0.897 23 C -0.189 4.189 24 N -0.382 5.382 25 Si 0.887 3.113 26 H -0.193 1.193 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.119 0.881 30 H 0.199 0.801 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.189 0.811 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.068 11.567 -0.270 18.998 hybrid contribution 0.061 1.047 0.009 1.049 sum 15.129 12.614 -0.261 19.700 Atomic orbital electron populations 1.81026 1.12688 1.09912 1.15124 1.25747 0.92681 0.91359 0.91210 1.16669 0.83219 0.94445 1.25074 1.20480 0.92681 0.94898 0.94282 1.17062 0.91215 0.89669 1.18192 1.19262 0.91043 0.93456 1.11605 1.23940 0.98505 0.91013 1.00256 1.76986 0.88118 1.20747 1.26373 1.48126 1.04438 1.05086 1.58581 1.21360 0.74955 0.84870 0.97990 0.90335 1.22419 0.98130 1.00407 0.98416 1.21606 0.93543 0.97659 1.03026 1.22267 1.00038 0.97947 0.99657 1.22642 0.81473 0.99298 0.97013 1.87788 1.15172 1.32457 1.95048 1.22645 0.96764 0.86630 1.03848 1.20351 0.97632 0.91989 0.96314 1.20746 0.93632 0.97100 1.11874 1.18459 0.91353 0.90570 0.87299 1.20812 1.03308 0.92505 1.33304 0.89736 1.27331 0.92325 1.05370 0.93871 1.70407 1.20720 1.33756 1.13342 0.83610 0.77404 0.72992 0.77255 1.19340 1.19394 1.19662 0.88117 0.80079 0.90342 0.89372 0.91397 0.90658 0.90252 0.90566 0.92532 0.87725 0.81135 0.88710 0.86894 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.34 18.54 41.84 0.78 -11.57 16 2 C 0.30 7.08 14.30 -22.47 -0.32 6.76 16 3 C -0.19 -4.30 5.93 -104.27 -0.62 -4.92 16 4 C 0.00 -0.04 9.28 -38.84 -0.36 -0.40 16 5 C -0.16 -3.14 5.88 -104.80 -0.62 -3.76 16 6 C -0.14 -2.55 6.07 -104.95 -0.64 -3.19 16 7 C 0.05 0.80 11.40 -17.02 -0.19 0.61 16 8 N -0.30 -4.88 12.35 30.83 0.38 -4.50 16 9 N -0.38 -5.74 3.66 -58.79 -0.22 -5.96 16 10 C 0.35 4.07 3.94 -4.00 -0.02 4.06 16 11 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 12 C -0.16 -1.52 5.60 -26.59 -0.15 -1.67 16 13 C -0.12 -0.80 6.03 -26.55 -0.16 -0.96 16 14 C -0.16 -0.99 6.14 -26.59 -0.16 -1.15 16 15 C 0.07 0.52 6.84 37.20 0.25 0.77 16 16 O -0.39 -4.33 9.55 -35.23 -0.34 -4.67 16 17 C 0.05 0.74 10.28 -16.44 -0.17 0.57 16 18 C -0.04 -0.87 9.44 -39.73 -0.37 -1.25 16 19 C -0.21 -4.76 7.88 -39.32 -0.31 -5.07 16 20 C 0.13 3.08 5.46 -104.61 -0.57 2.51 16 21 C -0.47 -11.53 8.48 -38.00 -0.32 -11.85 16 22 H 0.08 2.11 7.44 -52.49 -0.39 1.72 16 23 C 0.04 0.86 4.94 -17.29 -0.09 0.77 16 24 N -0.76 -18.00 12.31 55.56 0.68 -17.32 16 25 Si 1.07 19.75 30.00 -169.99 -5.10 14.65 16 26 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 27 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 28 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 29 H 0.10 1.82 6.98 -52.48 -0.37 1.45 16 30 H 0.18 2.56 7.30 -52.48 -0.38 2.18 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.17 2.59 6.97 -52.49 -0.37 2.22 16 40 H 0.09 1.68 6.92 -52.49 -0.36 1.32 16 41 H 0.11 2.54 6.50 -52.48 -0.34 2.20 16 42 H 0.31 7.37 6.68 -40.82 -0.27 7.10 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -27.62 357.69 -8.32 -35.94 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.08 Total: 6.20 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -4.81 Total: -18.18 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.62 Total: -39.34 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.34 Total: -4.67 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.10 Total: 14.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.62 -8.32 -35.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240676888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.555 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds