Wall clock time and date at job start Tue Mar 31 2020 13:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39078 * 120.56519 * 175.74691 * 3 2 1 5 5 C 1.39390 * 119.80812 * 179.97438 * 4 3 2 6 6 C 1.48029 * 119.50196 * 180.02562 * 5 4 3 7 7 C 1.41079 * 126.36423 * 359.68605 * 6 5 4 8 8 N 1.30552 * 108.11892 * 179.82088 * 7 6 5 9 9 N 1.39958 * 108.84860 * 0.44515 * 8 7 6 10 10 C 1.46492 * 125.81650 * 179.69621 * 9 8 7 11 11 H 1.08999 * 109.48551 * 64.99845 * 10 9 8 12 12 C 1.53096 * 109.48057 * 304.96382 * 10 9 8 13 13 C 1.53178 * 109.16371 * 182.40988 * 12 10 9 14 14 C 1.53173 * 109.03561 * 56.97904 * 13 12 10 15 15 C 1.53091 * 109.16970 * 303.02213 * 14 13 12 16 16 O 1.42900 * 109.41396 * 57.60335 * 15 14 13 17 17 C 1.34699 * 108.36476 * 359.71383 * 9 8 7 18 18 C 1.39996 * 120.99750 * 0.02562 * 5 4 3 19 19 C 1.35982 * 121.19221 * 359.68763 * 18 5 4 20 20 C 1.41056 * 120.11141 * 0.57124 * 19 18 5 21 21 C 1.40421 * 120.48794 * 179.73891 * 20 19 18 22 22 H 1.07999 * 119.99898 * 154.41764 * 21 20 19 23 23 C 1.40254 * 120.00156 * 334.41790 * 21 20 19 24 24 N 1.30664 * 119.99747 * 334.68065 * 23 21 20 25 25 Si 1.86798 * 120.00083 * 154.68377 * 23 21 20 26 26 H 1.48498 * 109.46874 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.46857 * 299.99729 * 25 23 21 28 28 H 1.48496 * 109.47337 * 59.99658 * 25 23 21 29 29 H 1.08006 * 120.09888 * 359.96110 * 4 3 2 30 30 H 1.08006 * 125.93913 * 359.97204 * 7 6 5 31 31 H 1.08994 * 109.52260 * 302.31587 * 12 10 9 32 32 H 1.08998 * 109.51938 * 62.50548 * 12 10 9 33 33 H 1.09006 * 109.53995 * 297.11469 * 13 12 10 34 34 H 1.08994 * 109.54463 * 176.84771 * 13 12 10 35 35 H 1.09004 * 109.52403 * 183.11432 * 14 13 12 36 36 H 1.09002 * 109.57326 * 62.95730 * 14 13 12 37 37 H 1.09004 * 109.47502 * 297.62644 * 15 14 13 38 38 H 1.08997 * 109.48707 * 177.59390 * 15 14 13 39 39 H 1.08002 * 126.30154 * 179.97438 * 17 9 8 40 40 H 1.07995 * 119.39873 * 179.97438 * 18 5 4 41 41 H 1.08004 * 119.94119 * 180.28593 * 19 18 5 42 42 H 0.97008 * 120.00243 * 354.20050 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 1.1952 -0.0888 5 6 4.6685 1.1775 -0.0869 6 6 5.4139 2.4529 -0.1812 7 6 4.8536 3.7437 -0.2833 8 7 5.8310 4.6072 -0.3408 9 7 7.0476 3.9172 -0.2891 10 6 8.3800 4.5243 -0.3340 11 1 8.5300 5.1381 0.5542 12 6 8.5010 5.3983 -1.5851 13 6 9.9158 5.9811 -1.6565 14 6 10.9299 4.8332 -1.6490 15 6 10.7152 3.9810 -0.3955 16 8 9.3712 3.4958 -0.3754 17 6 6.7845 2.5998 -0.1915 18 6 5.3741 -0.0283 0.0028 19 6 4.7244 -1.2192 0.0972 20 6 3.3144 -1.2582 0.0940 21 6 2.6354 -2.4839 0.1856 22 1 1.6341 -2.5177 0.5889 23 6 3.2575 -3.6643 -0.2467 24 7 4.1994 -3.6129 -1.1509 25 14 2.7396 -5.3096 0.4701 26 1 3.5440 -6.3940 -0.1480 27 1 2.9640 -5.3027 1.9381 28 1 1.2994 -5.5400 0.1906 29 1 2.7452 2.1339 -0.1593 30 1 3.7993 3.9770 -0.3072 31 1 8.3111 4.7935 -2.4717 32 1 7.7749 6.2097 -1.5342 33 1 10.0884 6.6259 -0.7947 34 1 10.0261 6.5592 -2.5739 35 1 11.9410 5.2405 -1.6437 36 1 10.7901 4.2166 -2.5369 37 1 10.8958 4.5878 0.4919 38 1 11.4060 3.1379 -0.4062 39 1 7.5132 1.8049 -0.1326 40 1 6.4540 -0.0120 0.0016 41 1 5.2890 -2.1370 0.1700 42 1 4.4105 -2.7710 -1.5842 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240676888.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:19 Heat of formation + Delta-G solvation = 49.331112 kcal Electronic energy + Delta-G solvation = -25587.960739 eV Core-core repulsion = 21919.181222 eV Total energy + Delta-G solvation = -3668.779516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.13168 -40.29465 -39.50659 -37.05906 -36.16307 -34.82765 -34.06255 -32.47363 -31.65889 -30.86621 -29.67077 -27.18687 -25.71240 -24.89975 -24.14540 -23.23564 -21.76493 -21.34888 -21.07217 -20.10911 -18.91214 -18.14716 -17.19017 -16.87498 -16.65313 -16.26565 -15.87984 -15.59449 -15.45026 -15.40613 -15.09692 -14.82143 -14.59683 -14.23497 -14.15568 -13.92416 -13.80950 -13.66690 -13.61702 -13.31970 -12.94461 -12.82484 -12.59055 -12.51719 -12.22493 -12.01245 -11.97225 -11.82286 -11.59888 -11.44339 -11.34038 -11.05663 -10.88132 -10.31661 -10.16534 -9.65878 -9.33628 -8.68265 -6.50514 0.35844 0.62161 1.05275 1.20641 1.51253 1.55443 1.80425 1.97702 2.00549 2.26247 2.48685 2.71482 2.71886 3.48196 3.56096 3.60493 3.72212 3.81711 3.88936 3.93404 4.04465 4.13707 4.29256 4.40746 4.42092 4.54252 4.62236 4.65835 4.75208 4.79731 4.85867 4.96570 4.98233 5.04319 5.08541 5.11543 5.30034 5.30695 5.53131 5.57563 5.66382 5.76471 5.95986 6.00926 6.10807 6.13208 6.22009 6.57587 6.70584 6.82911 6.92278 7.85886 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017958 B = 0.002771 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.846460 B =10100.763764 C =11413.958356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.304 3.696 3 C -0.205 4.205 4 C -0.006 4.006 5 C -0.139 4.139 6 C -0.175 4.175 7 C 0.047 3.953 8 N -0.308 5.308 9 N -0.375 5.375 10 C 0.341 3.659 11 H 0.093 0.907 12 C -0.149 4.149 13 C -0.115 4.115 14 C -0.157 4.157 15 C 0.063 3.937 16 O -0.407 6.407 17 C 0.057 3.943 18 C -0.041 4.041 19 C -0.223 4.223 20 C 0.111 3.889 21 C -0.510 4.510 22 H 0.067 0.933 23 C 0.011 3.989 24 N -0.778 5.778 25 Si 1.110 2.890 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.268 1.268 29 H 0.125 0.875 30 H 0.200 0.800 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.183 0.817 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.422 13.735 0.213 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.207 5.207 2 C -0.005 4.005 3 C -0.211 4.211 4 C -0.027 4.027 5 C -0.142 4.142 6 C -0.186 4.186 7 C -0.138 4.138 8 N -0.130 5.130 9 N -0.158 5.158 10 C 0.201 3.799 11 H 0.110 0.890 12 C -0.188 4.188 13 C -0.153 4.153 14 C -0.195 4.195 15 C -0.012 4.012 16 O -0.326 6.326 17 C -0.089 4.089 18 C -0.060 4.060 19 C -0.242 4.242 20 C 0.106 3.894 21 C -0.536 4.536 22 H 0.085 0.915 23 C -0.210 4.210 24 N -0.399 5.399 25 Si 0.926 3.074 26 H -0.186 1.186 27 H -0.182 1.182 28 H -0.192 1.192 29 H 0.143 0.857 30 H 0.217 0.783 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.200 0.800 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.508 13.263 0.034 21.964 hybrid contribution -0.474 0.816 -0.101 0.949 sum 17.034 14.079 -0.067 22.099 Atomic orbital electron populations 1.81001 1.13115 1.10525 1.16074 1.25958 0.92916 0.90837 0.90765 1.16881 0.82945 0.95193 1.26130 1.20724 0.93123 0.95027 0.93820 1.17306 0.91159 0.90538 1.15158 1.19193 0.91732 0.93072 1.14564 1.24243 0.99562 0.90384 0.99628 1.76970 0.88508 1.20976 1.26543 1.48521 1.05574 1.04766 1.56956 1.21704 0.73725 0.85074 0.99389 0.88965 1.22364 1.00239 0.99553 0.96610 1.21623 0.91415 0.97999 1.04297 1.22253 1.01203 0.97407 0.98625 1.22966 0.79632 1.00416 0.98225 1.87765 1.16633 1.32956 1.95279 1.22863 0.96533 0.87611 1.01874 1.20630 0.99045 0.91363 0.94965 1.20717 0.93036 0.97700 1.12753 1.18731 0.92293 0.90908 0.87498 1.20842 1.03142 0.93812 1.35848 0.91456 1.28449 0.91633 1.07734 0.93193 1.70500 1.22095 1.32948 1.14337 0.83078 0.77271 0.69773 0.77256 1.18556 1.18222 1.19242 0.85728 0.78300 0.92266 0.90013 0.89847 0.89619 0.87722 0.91726 0.90848 0.86422 0.79986 0.86133 0.87616 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.02 18.54 19.00 0.35 -25.66 16 2 C 0.30 14.63 14.30 88.33 1.26 15.90 16 3 C -0.21 -9.53 5.93 -19.63 -0.12 -9.65 16 4 C -0.01 -0.24 9.28 22.75 0.21 -0.03 16 5 C -0.14 -5.33 5.88 -19.98 -0.12 -5.45 16 6 C -0.17 -5.91 6.07 -20.08 -0.12 -6.03 16 7 C 0.05 1.46 11.40 85.58 0.98 2.44 16 8 N -0.31 -9.41 12.35 -56.36 -0.70 -10.11 16 9 N -0.38 -10.62 3.66 -440.38 -1.61 -12.24 16 10 C 0.34 7.17 3.94 86.41 0.34 7.51 16 11 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 12 C -0.15 -2.63 5.60 30.69 0.17 -2.46 16 13 C -0.12 -1.19 6.03 30.71 0.19 -1.01 16 14 C -0.16 -1.44 6.14 30.68 0.19 -1.25 16 15 C 0.06 0.71 6.84 72.01 0.49 1.20 16 16 O -0.41 -8.16 9.55 -148.98 -1.42 -9.58 16 17 C 0.06 1.76 10.28 84.16 0.87 2.63 16 18 C -0.04 -1.61 9.44 22.17 0.21 -1.40 16 19 C -0.22 -10.03 7.88 22.44 0.18 -9.85 16 20 C 0.11 5.45 5.46 -19.86 -0.11 5.34 16 21 C -0.51 -25.79 8.48 23.29 0.20 -25.59 16 22 H 0.07 3.53 7.44 -2.91 -0.02 3.51 16 23 C 0.01 0.54 4.94 85.36 0.42 0.96 16 24 N -0.78 -37.69 12.31 21.88 0.27 -37.42 16 25 Si 1.11 40.25 30.00 68.60 2.06 42.31 16 26 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 27 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 28 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 29 H 0.12 4.32 6.98 -2.91 -0.02 4.30 16 30 H 0.20 5.20 7.30 -2.91 -0.02 5.18 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.18 5.09 6.97 -2.91 -0.02 5.07 16 40 H 0.12 4.06 6.92 -2.91 -0.02 4.04 16 41 H 0.11 4.87 6.50 -2.91 -0.02 4.85 16 42 H 0.30 14.69 6.68 -92.70 -0.62 14.07 16 Total: -1.00 -60.49 357.69 5.39 -55.10 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 1.20 Total: 24.33 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 5.23 Total: -26.73 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.69 Total: -85.43 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.42 Total: -9.58 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.06 Total: 42.31 kcal Total: -60.49 5.39 -55.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240676888.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.432 kcal (2) G-P(sol) polarization free energy of solvation -60.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds