Wall clock time and date at job start Tue Mar 31 2020 13:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39075 * 120.56611 * 287.18211 * 3 2 1 5 5 C 1.39395 * 119.80458 * 179.97438 * 4 3 2 6 6 C 1.48035 * 119.49958 * 179.97438 * 5 4 3 7 7 C 1.41078 * 126.36413 * 359.97438 * 6 5 4 8 8 N 1.30547 * 108.12002 * 180.02562 * 7 6 5 9 9 N 1.39959 * 108.84879 * 359.97438 * 8 7 6 10 10 C 1.46495 * 125.81694 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.49059 * 184.99389 * 10 9 8 12 12 C 1.53095 * 109.48226 * 305.02322 * 10 9 8 13 13 C 1.53175 * 109.21836 * 177.62872 * 12 10 9 14 14 C 1.53178 * 109.03194 * 302.98414 * 13 12 10 15 15 C 1.53093 * 109.16587 * 56.98339 * 14 13 12 16 16 O 1.42908 * 109.41083 * 302.38968 * 15 14 13 17 17 C 1.34700 * 108.36659 * 0.26144 * 9 8 7 18 18 C 1.39985 * 121.00051 * 0.25415 * 5 4 3 19 19 C 1.35984 * 121.19745 * 359.47319 * 18 5 4 20 20 C 1.41063 * 120.10241 * 0.52511 * 19 18 5 21 21 C 1.40427 * 120.48394 * 179.71786 * 20 19 18 22 22 H 1.08004 * 119.99624 * 154.96754 * 21 20 19 23 23 C 1.40249 * 120.00119 * 334.96303 * 21 20 19 24 24 N 1.30673 * 120.00025 * 342.55652 * 23 21 20 25 25 Si 1.86800 * 119.99725 * 162.55566 * 23 21 20 26 26 H 1.48499 * 109.47103 * 94.66988 * 25 23 21 27 27 H 1.48505 * 109.46929 * 214.66577 * 25 23 21 28 28 H 1.48501 * 109.47315 * 334.66336 * 25 23 21 29 29 H 1.07999 * 120.10242 * 359.96103 * 4 3 2 30 30 H 1.08004 * 125.94334 * 0.02562 * 7 6 5 31 31 H 1.08993 * 109.52190 * 57.68101 * 12 10 9 32 32 H 1.09008 * 109.51916 * 297.56169 * 12 10 9 33 33 H 1.08996 * 109.54585 * 62.84690 * 13 12 10 34 34 H 1.08993 * 109.54425 * 183.12015 * 13 12 10 35 35 H 1.08998 * 109.52280 * 176.89123 * 14 13 12 36 36 H 1.09005 * 109.52509 * 297.07465 * 14 13 12 37 37 H 1.09000 * 109.48100 * 62.36945 * 15 14 13 38 38 H 1.08994 * 109.48088 * 182.39908 * 15 14 13 39 39 H 1.07999 * 126.30102 * 179.73273 * 17 9 8 40 40 H 1.08003 * 119.40646 * 179.74488 * 18 5 4 41 41 H 1.07993 * 119.95182 * 180.28246 * 19 18 5 42 42 H 0.97000 * 119.99857 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.3528 1.1441 5 6 4.6692 -0.3472 1.1262 6 6 5.4154 -0.7240 2.3479 7 6 4.8558 -1.1053 3.5856 8 7 5.8338 -1.3598 4.4121 9 7 7.0499 -1.1564 3.7500 10 6 8.3828 -1.3360 4.3308 11 1 9.1385 -1.0211 3.6113 12 6 8.5041 -0.4908 5.6015 13 6 9.8779 -0.7285 6.2359 14 6 10.0463 -2.2249 6.5165 15 6 9.8665 -3.0044 5.2111 16 8 8.5811 -2.7142 4.6580 17 6 6.7860 -0.7624 2.4892 18 6 5.3740 0.0149 -0.0278 19 6 4.7237 0.3623 -1.1704 20 6 3.3136 0.3735 -1.2065 21 6 2.6338 0.7366 -2.3804 22 1 1.6309 0.3769 -2.5568 23 6 3.2573 1.5664 -3.3236 24 7 4.3027 2.2725 -2.9829 25 14 2.5933 1.6622 -5.0670 26 1 1.6650 2.8157 -5.1804 27 1 3.7208 1.8389 -6.0171 28 1 1.8663 0.4081 -5.3894 29 1 2.7464 -0.6306 2.0438 30 1 3.8017 -1.1746 3.8103 31 1 7.7231 -0.7775 6.3056 32 1 8.3973 0.5642 5.3488 33 1 10.6581 -0.3958 5.5515 34 1 9.9491 -0.1721 7.1704 35 1 11.0428 -2.4105 6.9172 36 1 9.2964 -2.5468 7.2392 37 1 10.6415 -2.7112 4.5030 38 1 9.9430 -4.0728 5.4123 39 1 7.5143 -0.5227 1.7286 40 1 6.4539 0.0142 -0.0117 41 1 5.2876 0.6339 -2.0505 42 1 4.7341 2.8462 -3.6353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240676890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:24 Heat of formation + Delta-G solvation = 67.345143 kcal Electronic energy + Delta-G solvation = -25416.930352 eV Core-core repulsion = 21748.931982 eV Total energy + Delta-G solvation = -3667.998369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.85094 -39.31981 -37.63107 -35.10810 -34.29801 -34.02395 -32.99476 -30.99778 -30.13218 -29.68492 -28.35273 -25.73169 -24.81267 -23.86227 -22.43833 -21.77112 -20.80393 -20.30854 -19.57576 -17.75239 -17.49244 -16.68095 -16.35545 -15.90661 -15.47982 -15.06502 -14.75887 -14.39251 -14.03365 -13.96922 -13.71159 -13.47894 -13.05794 -12.95329 -12.81475 -12.63453 -12.44628 -11.97778 -11.82700 -11.76988 -11.63783 -11.55892 -11.36664 -11.30171 -11.19681 -10.96680 -10.85063 -10.73095 -10.35264 -9.90592 -9.86954 -9.70802 -9.55720 -9.13385 -8.57811 -7.72128 -7.24853 -7.00617 -4.64991 1.94974 2.23532 2.46659 2.60055 2.88509 2.90417 2.97746 3.56487 3.67533 3.69878 3.94227 4.32430 4.35337 4.39514 4.43973 4.47080 4.54068 4.65941 4.98789 5.07343 5.21612 5.27034 5.33891 5.41900 5.45491 5.50941 5.55549 5.65746 5.72841 5.87118 5.98617 6.00707 6.09195 6.26786 6.35072 6.67298 6.75842 6.84068 7.00563 7.07192 7.23141 7.35916 7.60413 7.69156 7.83873 7.88203 8.11696 8.22827 8.41263 8.57256 8.85136 9.70949 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002531 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.939257 B =11058.514589 C =11959.686109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.301 3.699 3 C -0.186 4.186 4 C -0.011 4.011 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.046 3.954 8 N -0.291 5.291 9 N -0.371 5.371 10 C 0.345 3.655 11 H 0.090 0.910 12 C -0.155 4.155 13 C -0.120 4.120 14 C -0.160 4.160 15 C 0.069 3.931 16 O -0.387 6.387 17 C 0.023 3.977 18 C -0.063 4.063 19 C -0.163 4.163 20 C 0.152 3.848 21 C -0.424 4.424 22 H 0.086 0.914 23 C 0.076 3.924 24 N -0.759 5.759 25 Si 0.914 3.086 26 H -0.265 1.265 27 H -0.270 1.270 28 H -0.255 1.255 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.170 0.830 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.108 -3.665 10.463 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.009 4.009 3 C -0.192 4.192 4 C -0.032 4.032 5 C -0.154 4.154 6 C -0.139 4.139 7 C -0.141 4.141 8 N -0.112 5.112 9 N -0.158 5.158 10 C 0.203 3.797 11 H 0.107 0.893 12 C -0.193 4.193 13 C -0.158 4.158 14 C -0.198 4.198 15 C -0.008 4.008 16 O -0.305 6.305 17 C -0.119 4.119 18 C -0.082 4.082 19 C -0.182 4.182 20 C 0.147 3.853 21 C -0.451 4.451 22 H 0.104 0.896 23 C -0.148 4.148 24 N -0.380 5.380 25 Si 0.737 3.263 26 H -0.190 1.190 27 H -0.194 1.194 28 H -0.178 1.178 29 H 0.118 0.882 30 H 0.197 0.803 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.187 0.813 40 H 0.110 0.890 41 H 0.142 0.858 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.847 -4.003 11.571 19.244 hybrid contribution 0.285 0.616 -1.580 1.720 sum 15.132 -3.386 9.991 18.446 Atomic orbital electron populations 1.81020 1.12753 1.14895 1.10316 1.25777 0.92711 0.91041 0.91329 1.16763 0.83185 1.23288 0.96001 1.20435 0.92646 0.95232 0.94911 1.17119 0.91279 1.14963 0.92077 1.19317 0.90920 1.08740 0.94917 1.23983 0.98715 0.99684 0.91748 1.76999 0.89029 1.23340 1.21784 1.48003 1.04589 1.53941 1.09235 1.21620 0.80398 0.83314 0.94358 0.89268 1.22373 0.98857 1.00551 0.97556 1.21605 0.96380 0.96338 1.01483 1.22250 1.02912 0.95774 0.98831 1.22585 0.84083 1.00580 0.93536 1.87986 1.34916 1.25077 1.82504 1.22622 0.97307 1.04711 0.87281 1.20383 0.97484 0.97572 0.92762 1.20881 0.93727 1.05627 0.98015 1.18460 0.91584 0.86049 0.89241 1.19771 1.01662 1.22831 1.00808 0.89551 1.26133 0.93928 0.93234 1.01494 1.69734 1.15969 1.15800 1.36547 0.86161 0.79748 0.80435 0.79951 1.18996 1.19432 1.17843 0.88214 0.80285 0.89385 0.90214 0.91504 0.90717 0.90473 0.90629 0.92852 0.88289 0.81286 0.89026 0.85770 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.33 18.54 41.84 0.78 -11.56 16 2 C 0.30 7.07 14.29 -22.47 -0.32 6.75 16 3 C -0.19 -4.25 5.93 -104.27 -0.62 -4.87 16 4 C -0.01 -0.23 9.28 -38.84 -0.36 -0.59 16 5 C -0.15 -2.98 5.88 -104.79 -0.62 -3.60 16 6 C -0.13 -2.27 6.07 -104.95 -0.64 -2.91 16 7 C 0.05 0.78 11.40 -17.02 -0.19 0.58 16 8 N -0.29 -4.99 12.32 30.83 0.38 -4.61 16 9 N -0.37 -5.67 3.54 -58.74 -0.21 -5.88 16 10 C 0.34 4.07 3.59 -4.00 -0.01 4.05 16 11 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 12 C -0.15 -1.54 5.59 -26.59 -0.15 -1.69 16 13 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 14 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 15 C 0.07 0.55 6.84 37.21 0.25 0.81 16 16 O -0.39 -4.87 10.64 -35.23 -0.37 -5.25 16 17 C 0.02 0.36 10.86 -16.44 -0.18 0.18 16 18 C -0.06 -1.25 9.43 -39.74 -0.37 -1.62 16 19 C -0.16 -3.63 8.63 -39.32 -0.34 -3.97 16 20 C 0.15 3.63 5.73 -104.61 -0.60 3.03 16 21 C -0.42 -10.21 8.55 -38.00 -0.33 -10.53 16 22 H 0.09 2.12 7.38 -52.48 -0.39 1.73 16 23 C 0.08 1.68 5.15 -17.29 -0.09 1.59 16 24 N -0.76 -16.98 10.97 55.56 0.61 -16.37 16 25 Si 0.91 16.90 29.60 -169.99 -5.03 11.87 16 26 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 27 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 28 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 29 H 0.10 1.81 6.98 -52.49 -0.37 1.45 16 30 H 0.18 2.63 7.30 -52.48 -0.38 2.25 16 31 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.17 2.17 7.25 -52.49 -0.38 1.79 16 40 H 0.09 1.57 6.92 -52.48 -0.36 1.21 16 41 H 0.12 2.79 6.19 -52.49 -0.33 2.47 16 42 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -28.18 359.80 -8.45 -36.64 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.14 Total: 4.74 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -4.89 Total: -15.01 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.56 Total: -38.41 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.37 Total: -5.25 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.18 -8.45 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240676890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.981 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds