Wall clock time and date at job start Tue Mar 31 2020 15:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.46900 * 2 1 4 4 N 1.33868 * 126.12863 * 265.02234 * 3 2 1 5 5 H 0.96996 * 124.98766 * 0.02562 * 4 3 2 6 6 N 1.39877 * 110.01643 * 180.02562 * 4 3 2 7 7 C 1.31990 * 109.16959 * 359.97438 * 6 4 3 8 8 N 1.34368 * 134.11276 * 180.02562 * 7 6 4 9 9 C 1.30529 * 121.57030 * 179.97438 * 8 7 6 10 10 C 1.40752 * 122.39429 * 0.02562 * 9 8 7 11 11 C 1.47858 * 119.91737 * 179.97438 * 10 9 8 12 12 C 1.40155 * 119.84518 * 179.97438 * 11 10 9 13 13 C 1.36074 * 120.38232 * 180.02562 * 12 11 10 14 14 C 1.40940 * 120.06285 * 0.02562 * 13 12 11 15 15 C 1.40796 * 120.15098 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99608 * 204.95934 * 15 14 13 17 17 C 1.39930 * 120.00162 * 24.95386 * 15 14 13 18 18 N 1.30877 * 120.00196 * 17.84059 * 17 15 14 19 19 Si 1.86808 * 119.99980 * 197.83963 * 17 15 14 20 20 H 1.48500 * 109.46830 * 90.00354 * 19 17 15 21 21 H 1.48500 * 109.46943 * 210.00126 * 19 17 15 22 22 H 1.48497 * 109.47025 * 330.00365 * 19 17 15 23 23 C 1.41523 * 119.69603 * 359.97404 * 14 13 12 24 24 O 1.35685 * 120.19086 * 180.02562 * 23 14 13 25 25 C 1.42898 * 117.00163 * 180.02562 * 24 23 14 26 26 C 1.37898 * 119.61996 * 359.74868 * 23 14 13 27 27 C 1.38801 * 120.16283 * 359.97438 * 10 9 8 28 28 C 1.38505 * 126.12322 * 84.71948 * 3 2 1 29 29 H 1.09006 * 109.46867 * 60.00133 * 1 2 3 30 30 H 1.08999 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47427 * 299.99860 * 1 2 3 32 32 H 1.08997 * 109.47109 * 119.99850 * 2 1 3 33 33 H 1.09000 * 109.46905 * 240.00156 * 2 1 3 34 34 H 1.08008 * 118.80018 * 179.97438 * 9 8 7 35 35 H 1.08000 * 119.80988 * 0.02562 * 12 11 10 36 36 H 1.07996 * 119.97031 * 179.97438 * 13 12 11 37 37 H 0.97003 * 120.00034 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.47136 * 180.02562 * 25 24 23 39 39 H 1.09000 * 109.47230 * 299.99812 * 25 24 23 40 40 H 1.09003 * 109.47217 * 59.99919 * 25 24 23 41 41 H 1.08001 * 120.03201 * 180.24317 * 26 23 14 42 42 H 1.08001 * 121.05032 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3838 2.1337 -1.0772 5 1 2.3539 1.8113 -1.9915 6 7 2.8005 3.4117 -0.6904 7 6 2.7159 3.5162 0.6226 8 7 2.9814 4.4971 1.5018 9 6 2.8037 4.3318 2.7843 10 6 2.3266 3.1253 3.3302 11 6 2.1462 2.9977 4.7921 12 6 1.6705 1.7959 5.3340 13 6 1.5000 1.6666 6.6778 14 6 1.8012 2.7444 7.5346 15 6 1.6248 2.6129 8.9253 16 1 1.4578 3.4896 9.5336 17 6 1.6659 1.3466 9.5191 18 7 2.2019 0.3398 8.8773 19 14 0.9556 1.0929 11.2282 20 1 -0.4780 0.7214 11.1182 21 1 1.6973 0.0058 11.9161 22 1 1.0827 2.3499 12.0086 23 6 2.2817 3.9594 6.9907 24 8 2.5753 5.0032 7.8063 25 6 3.0550 6.1972 7.1848 26 6 2.4552 4.0743 5.6275 27 6 2.0251 2.0550 2.4994 28 6 2.2073 2.2249 1.1140 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.0319 5.1503 3.4510 35 1 1.4381 0.9675 4.6812 36 1 1.1326 0.7377 7.0881 37 1 2.2300 -0.5381 9.2888 38 1 3.2512 6.9504 7.9479 39 1 3.9760 5.9804 6.6436 40 1 2.3042 6.5715 6.4889 41 1 2.8253 4.9971 5.2057 42 1 1.6585 1.1227 2.9028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242823762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:48 Heat of formation + Delta-G solvation = 59.709132 kcal Electronic energy + Delta-G solvation = -25984.580522 eV Core-core repulsion = 22316.251030 eV Total energy + Delta-G solvation = -3668.329492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.53558 -40.53228 -39.22325 -37.73792 -35.85660 -35.13047 -33.42336 -32.46856 -31.23685 -30.63850 -29.54622 -28.04408 -26.69474 -26.01069 -24.50790 -23.68226 -22.58228 -21.79657 -20.65548 -19.44467 -18.93460 -18.56691 -17.76867 -17.09205 -16.67627 -16.53069 -16.37861 -16.16515 -15.75213 -15.58755 -15.02331 -14.79866 -14.58354 -14.16158 -14.10242 -14.05197 -13.88141 -13.47301 -13.23238 -12.93403 -12.82853 -12.70144 -12.58238 -12.48197 -12.13485 -12.07996 -11.94738 -11.91364 -11.56707 -11.35296 -11.27567 -10.98661 -10.14278 -10.10217 -9.59642 -8.93720 -8.66196 -8.39352 -6.12176 -0.59598 0.23653 1.08104 1.20581 1.36253 1.42477 1.54682 1.57166 1.64103 2.24621 2.65842 2.91286 2.98116 3.03741 3.27239 3.76105 3.77417 3.87224 4.00578 4.09211 4.27695 4.30299 4.33657 4.49097 4.53495 4.55490 4.62639 4.68003 4.78096 4.82298 5.01216 5.02065 5.06130 5.17622 5.24043 5.29240 5.36076 5.46876 5.54076 5.59124 5.88594 5.95794 6.13805 6.22604 6.30897 6.38600 6.55407 6.80483 6.90837 7.01279 7.26984 8.33135 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.003293 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.171733 B = 8501.490018 C =10085.427588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.153 3.847 4 N -0.395 5.395 5 H 0.462 0.538 6 N -0.336 5.336 7 C 0.232 3.768 8 N -0.509 5.509 9 C 0.197 3.803 10 C -0.112 4.112 11 C -0.141 4.141 12 C -0.106 4.106 13 C -0.167 4.167 14 C 0.067 3.933 15 C -0.471 4.471 16 H 0.071 0.929 17 C 0.036 3.964 18 N -0.815 5.815 19 Si 0.980 3.020 20 H -0.260 1.260 21 H -0.266 1.266 22 H -0.264 1.264 23 C -0.001 4.001 24 O -0.340 6.340 25 C 0.024 3.976 26 C -0.162 4.162 27 C -0.011 4.011 28 C -0.263 4.263 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.174 0.826 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.290 0.710 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.129 0.871 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -3.905 -13.889 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C 0.009 3.991 4 N -0.098 5.098 5 H 0.311 0.689 6 N -0.168 5.168 7 C -0.028 4.028 8 N -0.222 5.222 9 C 0.014 3.986 10 C -0.116 4.116 11 C -0.143 4.143 12 C -0.124 4.124 13 C -0.187 4.187 14 C 0.065 3.935 15 C -0.500 4.500 16 H 0.089 0.911 17 C -0.179 4.179 18 N -0.441 5.441 19 Si 0.801 3.199 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.045 4.045 24 O -0.255 6.255 25 C -0.071 4.071 26 C -0.181 4.181 27 C -0.038 4.038 28 C -0.274 4.274 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.191 0.809 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.818 -2.713 -15.321 15.665 hybrid contribution -0.446 -0.960 1.290 1.668 sum -2.264 -3.672 -14.031 14.679 Atomic orbital electron populations 1.21779 0.92746 1.03896 1.02202 1.20592 0.97203 0.85482 1.06790 1.21864 0.95184 0.96055 0.85951 1.46258 1.44901 1.08575 1.10051 0.68894 1.77544 1.30752 0.98251 1.10297 1.21588 0.98066 0.91152 0.92004 1.67255 1.21680 1.30571 1.02653 1.23266 0.89362 0.96342 0.89677 1.19384 1.03884 0.95149 0.93229 1.17840 1.11568 0.94987 0.89933 1.20639 1.00705 0.96424 0.94666 1.20713 1.06183 0.99419 0.92366 1.17522 0.91694 0.89835 0.94478 1.19607 1.43108 0.93988 0.93312 0.91069 1.26691 0.92573 0.94693 1.03969 1.69871 1.31242 1.02499 1.40444 0.85234 0.79254 0.78863 0.76591 1.18409 1.19075 1.18791 1.19212 1.06033 0.89985 0.89285 1.85922 1.81721 1.21894 1.35948 1.23101 0.98549 0.85467 0.99989 1.20923 1.06121 0.99488 0.91596 1.21108 0.94706 0.98601 0.89426 1.20262 1.15189 0.96700 0.95290 0.92164 0.89098 0.93522 0.87747 0.86413 0.80911 0.86342 0.87031 0.89876 0.87188 0.93075 0.92745 0.85352 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 71.98 0.71 -0.90 16 2 C -0.06 -0.68 6.50 29.85 0.19 -0.49 16 3 C 0.15 3.17 6.54 42.31 0.28 3.44 16 4 N -0.39 -8.07 7.17 -46.73 -0.34 -8.41 16 5 H 0.46 4.96 8.96 -213.47 -1.91 3.04 16 6 N -0.34 -10.75 12.68 -52.78 -0.67 -11.42 16 7 C 0.23 8.34 8.60 136.85 1.18 9.52 16 8 N -0.51 -19.29 10.42 -188.83 -1.97 -21.26 16 9 C 0.20 6.95 10.52 85.50 0.90 7.85 16 10 C -0.11 -4.09 5.88 -19.98 -0.12 -4.21 16 11 C -0.14 -5.84 5.89 -19.90 -0.12 -5.96 16 12 C -0.11 -4.58 9.34 22.23 0.21 -4.38 16 13 C -0.17 -8.35 8.61 22.43 0.19 -8.16 16 14 C 0.07 3.59 5.58 -21.18 -0.12 3.47 16 15 C -0.47 -25.41 8.69 23.31 0.20 -25.21 16 16 H 0.07 3.87 7.64 -2.91 -0.02 3.85 16 17 C 0.04 1.79 5.13 85.25 0.44 2.23 16 18 N -0.81 -40.98 10.97 21.83 0.24 -40.74 16 19 Si 0.98 37.64 29.60 68.60 2.03 39.67 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 23 C 0.00 -0.04 6.71 23.00 0.15 0.12 16 24 O -0.34 -15.41 9.77 -90.04 -0.88 -16.29 16 25 C 0.02 0.76 9.81 113.37 1.11 1.87 16 26 C -0.16 -6.87 8.40 22.55 0.19 -6.68 16 27 C -0.01 -0.34 9.58 23.02 0.22 -0.12 16 28 C -0.26 -7.94 6.26 -20.24 -0.13 -8.07 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.17 5.35 6.08 -2.91 -0.02 5.33 16 35 H 0.12 4.34 6.17 -2.91 -0.02 4.32 16 36 H 0.11 5.75 6.17 -2.91 -0.02 5.74 16 37 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 40 H 0.05 1.57 7.68 -2.39 -0.02 1.55 16 41 H 0.13 4.57 4.35 -2.91 -0.01 4.56 16 42 H 0.15 4.13 6.21 -2.91 -0.02 4.11 16 Total: -1.00 -71.78 351.93 3.09 -68.69 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.82 Total: 25.42 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 5.50 Total: -35.67 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.73 Total: -81.83 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.88 Total: -16.29 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -71.78 3.09 -68.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242823762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.396 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds