Wall clock time and date at job start Tue Mar 31 2020 15:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46772 * 2 1 4 4 N 1.33880 * 126.10550 * 265.02562 * 3 2 1 5 5 H 0.97001 * 124.99819 * 359.97438 * 4 3 2 6 6 N 1.39895 * 110.00294 * 180.02562 * 4 3 2 7 7 C 1.32052 * 109.11889 * 359.97438 * 6 4 3 8 8 N 1.34298 * 134.15887 * 180.02562 * 7 6 4 9 9 C 1.30629 * 121.52473 * 180.02562 * 8 7 6 10 10 C 1.40541 * 122.42904 * 0.02562 * 9 8 7 11 11 C 1.48328 * 119.87548 * 179.97438 * 10 9 8 12 12 C 1.39972 * 119.92241 * 180.02562 * 11 10 9 13 13 C 1.38021 * 120.47062 * 179.97438 * 12 11 10 14 14 C 1.38519 * 120.30686 * 0.02562 * 13 12 11 15 15 O 1.35610 * 120.08099 * 179.97438 * 14 13 12 16 16 C 1.42905 * 116.99770 * 359.97438 * 15 14 13 17 17 C 1.41386 * 119.83853 * 359.97341 * 14 13 12 18 18 C 1.41187 * 120.23059 * 180.02562 * 17 14 13 19 19 H 1.08002 * 119.99815 * 24.62148 * 18 17 14 20 20 C 1.39890 * 119.99900 * 204.62315 * 18 17 14 21 21 N 1.30879 * 120.00457 * 17.62666 * 20 18 17 22 22 Si 1.86801 * 119.99487 * 197.62914 * 20 18 17 23 23 H 1.48500 * 109.47363 * 60.00461 * 22 20 18 24 24 H 1.48501 * 109.46881 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47296 * 299.99666 * 22 20 18 26 26 C 1.38633 * 119.92670 * 359.72377 * 11 10 9 27 27 C 1.38382 * 120.24284 * 359.97438 * 10 9 8 28 28 C 1.38367 * 126.11095 * 84.71863 * 3 2 1 29 29 H 1.09000 * 109.46813 * 299.99924 * 1 2 3 30 30 H 1.08995 * 109.47546 * 60.00132 * 1 2 3 31 31 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47040 * 119.99766 * 2 1 3 33 33 H 1.09000 * 109.46813 * 240.00076 * 2 1 3 34 34 H 1.07998 * 118.78005 * 179.97438 * 9 8 7 35 35 H 1.08004 * 119.76337 * 359.97417 * 12 11 10 36 36 H 1.07999 * 119.84285 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46947 * 60.00062 * 16 15 14 38 38 H 1.09002 * 109.46697 * 179.97438 * 16 15 14 39 39 H 1.08990 * 109.47260 * 299.99821 * 16 15 14 40 40 H 0.96993 * 120.00418 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.15061 * 0.02688 * 26 11 10 42 42 H 1.07995 * 121.04656 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3837 2.1334 -1.0776 5 1 2.3543 1.8106 -1.9918 6 7 2.8004 3.4116 -0.6910 7 6 2.7156 3.5153 0.6227 8 7 2.9804 4.4944 1.5030 9 6 2.8026 4.3258 2.7861 10 6 2.3272 3.1198 3.3290 11 6 2.1469 2.9900 4.7955 12 6 1.6740 1.7892 5.3373 13 6 1.5025 1.6559 6.7004 14 6 1.7965 2.7110 7.5484 15 8 1.6258 2.5751 8.8868 16 6 1.1385 1.3157 9.3541 17 6 2.2750 3.9298 7.0151 18 6 2.5777 5.0104 7.8718 19 1 2.8329 4.8254 8.9049 20 6 2.5472 6.3206 7.3827 21 7 1.9206 6.5876 6.2651 22 14 3.4010 7.6893 8.3247 23 1 4.8495 7.3827 8.4390 24 1 3.2220 8.9740 7.6018 25 1 2.8096 7.7993 9.6824 26 6 2.4531 4.0562 5.6270 27 6 2.0268 2.0530 2.5004 28 6 2.2071 2.2240 1.1131 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.0302 5.1431 3.4544 35 1 1.4417 0.9610 4.6841 36 1 1.1366 0.7249 7.1075 37 1 1.8340 0.5274 9.0661 38 1 1.0484 1.3413 10.4401 39 1 0.1618 1.1176 8.9128 40 1 1.8991 7.4961 5.9262 41 1 2.8222 4.9813 5.2093 42 1 1.6603 1.1205 2.9036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242824004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:38 Heat of formation + Delta-G solvation = 78.827651 kcal Electronic energy + Delta-G solvation = -26111.109376 eV Core-core repulsion = 22443.608925 eV Total energy + Delta-G solvation = -3667.500450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34393 -38.86530 -37.93209 -36.05801 -34.44774 -33.76717 -32.08360 -31.05073 -29.91697 -29.47566 -27.48788 -26.46252 -25.32493 -24.65894 -23.62353 -22.32515 -21.12008 -20.09577 -19.43983 -17.79780 -17.57175 -17.05935 -16.36486 -15.61285 -15.45047 -15.12998 -14.83604 -14.67753 -14.48866 -14.41787 -13.87108 -13.49661 -13.00397 -12.99933 -12.57311 -12.52351 -12.33728 -12.24731 -11.96550 -11.71720 -11.49412 -11.34567 -11.24014 -11.06267 -10.94627 -10.74250 -10.59385 -10.47100 -10.03830 -9.81383 -9.49387 -9.18211 -8.77188 -8.73061 -7.97391 -7.54266 -6.81873 -6.51868 -4.27563 0.62560 1.73025 2.43974 2.58002 2.76840 3.05023 3.12322 3.14821 3.25549 3.97609 4.17433 4.23754 4.26305 4.45977 4.57234 4.69284 4.91437 4.97284 5.17018 5.32140 5.38316 5.49182 5.53601 5.56279 5.65027 5.72740 5.79617 5.81977 5.88517 5.93828 6.01218 6.17081 6.20263 6.47892 6.60825 6.76224 6.93186 7.05282 7.10646 7.26918 7.30391 7.59690 7.63322 7.66247 7.92108 8.12015 8.33184 8.40694 8.65643 8.81231 9.01034 10.20212 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.003755 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.755236 B = 7454.253460 C = 9341.832542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.062 4.062 3 C 0.116 3.884 4 N -0.419 5.419 5 H 0.441 0.559 6 N -0.301 5.301 7 C 0.264 3.736 8 N -0.483 5.483 9 C 0.213 3.787 10 C -0.097 4.097 11 C -0.059 4.059 12 C -0.195 4.195 13 C -0.177 4.177 14 C 0.020 3.980 15 O -0.311 6.311 16 C 0.034 3.966 17 C 0.098 3.902 18 C -0.445 4.445 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.130 4.130 27 C -0.018 4.018 28 C -0.239 4.239 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.174 0.826 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.283 0.717 41 H 0.132 0.868 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -11.906 -8.463 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.025 4.025 4 N -0.120 5.120 5 H 0.285 0.715 6 N -0.132 5.132 7 C 0.003 3.997 8 N -0.195 5.195 9 C 0.029 3.971 10 C -0.101 4.101 11 C -0.060 4.060 12 C -0.215 4.215 13 C -0.196 4.196 14 C -0.024 4.024 15 O -0.225 6.225 16 C -0.062 4.062 17 C 0.095 3.905 18 C -0.474 4.474 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.150 4.150 27 C -0.046 4.046 28 C -0.251 4.251 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.191 0.809 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.149 0.851 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.327 -10.131 -10.112 14.375 hybrid contribution -0.417 -1.020 0.824 1.376 sum -1.744 -11.151 -9.288 14.617 Atomic orbital electron populations 1.21776 0.93429 1.02524 1.03009 1.20302 0.96916 0.88503 1.04370 1.21161 0.98888 0.94948 0.87471 1.46250 1.47006 1.10035 1.08753 0.71510 1.77679 1.29058 0.95686 1.10800 1.21413 0.96748 0.90162 0.91407 1.67448 1.20690 1.29249 1.02149 1.23420 0.87807 0.96231 0.89662 1.19651 1.01642 0.94106 0.94659 1.18191 1.03660 0.95212 0.88934 1.20090 1.11011 0.96753 0.93619 1.20519 1.07628 0.97291 0.94202 1.19354 1.05386 0.96539 0.81144 1.85967 1.81816 1.33282 1.21441 1.22745 0.97897 0.86324 0.99213 1.16937 0.91671 0.89749 0.92150 1.19389 1.40117 0.89872 0.98054 0.89902 1.25867 0.93173 1.00197 0.94991 1.69793 1.30626 1.22434 1.19301 0.86354 0.80861 0.79183 0.80314 1.18794 1.20318 1.19079 1.21202 1.03899 0.97614 0.92289 1.20896 0.95949 0.98615 0.89155 1.20055 1.13854 0.96646 0.94549 0.91488 0.92612 0.91399 0.88567 0.90281 0.80911 0.88862 0.88404 0.94186 0.90015 0.94097 0.90610 0.85076 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.90 37.16 0.37 -0.73 16 2 C -0.06 -0.47 6.50 -27.88 -0.18 -0.66 16 3 C 0.12 1.41 6.53 -81.65 -0.53 0.88 16 4 N -0.42 -5.07 7.17 33.86 0.24 -4.83 16 5 H 0.44 3.34 8.96 -182.75 -1.64 1.70 16 6 N -0.30 -5.22 12.69 31.96 0.41 -4.82 16 7 C 0.26 5.08 8.60 -156.42 -1.35 3.73 16 8 N -0.48 -9.94 10.42 -11.09 -0.12 -10.06 16 9 C 0.21 4.26 10.52 -17.20 -0.18 4.08 16 10 C -0.10 -1.90 5.88 -104.82 -0.62 -2.51 16 11 C -0.06 -1.28 5.87 -104.95 -0.62 -1.89 16 12 C -0.20 -4.00 9.41 -39.01 -0.37 -4.36 16 13 C -0.18 -3.73 9.01 -39.56 -0.36 -4.09 16 14 C 0.02 0.48 6.72 -38.28 -0.26 0.22 16 15 O -0.31 -6.91 9.76 -18.53 -0.18 -7.09 16 16 C 0.03 0.55 9.81 101.05 0.99 1.55 16 17 C 0.10 2.50 5.58 -106.72 -0.60 1.91 16 18 C -0.45 -11.56 8.71 -37.84 -0.33 -11.89 16 19 H 0.08 2.15 7.64 -52.49 -0.40 1.75 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.80 -19.70 10.97 55.54 0.61 -19.09 16 22 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 26 C -0.13 -3.15 8.05 -38.58 -0.31 -3.46 16 27 C -0.02 -0.31 9.58 -38.51 -0.37 -0.68 16 28 C -0.24 -3.93 6.26 -105.19 -0.66 -4.58 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.17 3.40 6.08 -52.49 -0.32 3.08 16 35 H 0.09 1.63 6.18 -52.48 -0.32 1.30 16 36 H 0.10 1.77 6.27 -52.49 -0.33 1.44 16 37 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.13 3.18 4.24 -52.49 -0.22 2.96 16 42 H 0.13 1.93 6.21 -52.49 -0.33 1.60 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -31.28 352.04 -10.24 -41.52 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.03 Total: 6.34 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -5.45 Total: -20.75 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 1.14 Total: -38.80 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.18 Total: -7.09 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.28 -10.24 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242824004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.350 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds