Wall clock time and date at job start Tue Mar 31 2020 15:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46772 * 2 1 4 4 N 1.33880 * 126.10550 * 265.02562 * 3 2 1 5 5 H 0.97001 * 124.99819 * 359.97438 * 4 3 2 6 6 N 1.39895 * 110.00294 * 180.02562 * 4 3 2 7 7 C 1.32052 * 109.11889 * 359.97438 * 6 4 3 8 8 N 1.34298 * 134.15887 * 180.02562 * 7 6 4 9 9 C 1.30629 * 121.52473 * 180.02562 * 8 7 6 10 10 C 1.40541 * 122.42904 * 0.02562 * 9 8 7 11 11 C 1.48328 * 119.87548 * 179.97438 * 10 9 8 12 12 C 1.39972 * 119.92241 * 180.02562 * 11 10 9 13 13 C 1.38021 * 120.47062 * 179.97438 * 12 11 10 14 14 C 1.38519 * 120.30686 * 0.02562 * 13 12 11 15 15 O 1.35610 * 120.08099 * 179.97438 * 14 13 12 16 16 C 1.42905 * 116.99770 * 359.97438 * 15 14 13 17 17 C 1.41386 * 119.83853 * 359.97341 * 14 13 12 18 18 C 1.41187 * 120.23059 * 180.02562 * 17 14 13 19 19 H 1.08002 * 119.99815 * 24.62148 * 18 17 14 20 20 C 1.39890 * 119.99900 * 204.62315 * 18 17 14 21 21 N 1.30879 * 120.00457 * 17.62666 * 20 18 17 22 22 Si 1.86801 * 119.99487 * 197.62914 * 20 18 17 23 23 H 1.48500 * 109.47363 * 60.00461 * 22 20 18 24 24 H 1.48501 * 109.46881 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47296 * 299.99666 * 22 20 18 26 26 C 1.38633 * 119.92670 * 359.72377 * 11 10 9 27 27 C 1.38382 * 120.24284 * 359.97438 * 10 9 8 28 28 C 1.38367 * 126.11095 * 84.71863 * 3 2 1 29 29 H 1.09000 * 109.46813 * 299.99924 * 1 2 3 30 30 H 1.08995 * 109.47546 * 60.00132 * 1 2 3 31 31 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47040 * 119.99766 * 2 1 3 33 33 H 1.09000 * 109.46813 * 240.00076 * 2 1 3 34 34 H 1.07998 * 118.78005 * 179.97438 * 9 8 7 35 35 H 1.08004 * 119.76337 * 359.97417 * 12 11 10 36 36 H 1.07999 * 119.84285 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46947 * 60.00062 * 16 15 14 38 38 H 1.09002 * 109.46697 * 179.97438 * 16 15 14 39 39 H 1.08990 * 109.47260 * 299.99821 * 16 15 14 40 40 H 0.96993 * 120.00418 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.15061 * 0.02688 * 26 11 10 42 42 H 1.07995 * 121.04656 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3837 2.1334 -1.0776 5 1 2.3543 1.8106 -1.9918 6 7 2.8004 3.4116 -0.6910 7 6 2.7156 3.5153 0.6227 8 7 2.9804 4.4944 1.5030 9 6 2.8026 4.3258 2.7861 10 6 2.3272 3.1198 3.3290 11 6 2.1469 2.9900 4.7955 12 6 1.6740 1.7892 5.3373 13 6 1.5025 1.6559 6.7004 14 6 1.7965 2.7110 7.5484 15 8 1.6258 2.5751 8.8868 16 6 1.1385 1.3157 9.3541 17 6 2.2750 3.9298 7.0151 18 6 2.5777 5.0104 7.8718 19 1 2.8329 4.8254 8.9049 20 6 2.5472 6.3206 7.3827 21 7 1.9206 6.5876 6.2651 22 14 3.4010 7.6893 8.3247 23 1 4.8495 7.3827 8.4390 24 1 3.2220 8.9740 7.6018 25 1 2.8096 7.7993 9.6824 26 6 2.4531 4.0562 5.6270 27 6 2.0268 2.0530 2.5004 28 6 2.2071 2.2240 1.1131 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.0302 5.1431 3.4544 35 1 1.4417 0.9610 4.6841 36 1 1.1366 0.7249 7.1075 37 1 1.8340 0.5274 9.0661 38 1 1.0484 1.3413 10.4401 39 1 0.1618 1.1176 8.9128 40 1 1.8991 7.4961 5.9262 41 1 2.8222 4.9813 5.2093 42 1 1.6603 1.1205 2.9036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242824004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:37 Heat of formation + Delta-G solvation = 60.231033 kcal Electronic energy + Delta-G solvation = -26111.915786 eV Core-core repulsion = 22443.608925 eV Total energy + Delta-G solvation = -3668.306860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57373 -40.47212 -39.35090 -37.64915 -35.71854 -35.14716 -33.44576 -32.37104 -31.60196 -30.76113 -28.84487 -27.91760 -26.96848 -25.99663 -24.55009 -23.69313 -22.73022 -21.67286 -20.67445 -19.29487 -18.99300 -18.38618 -17.94464 -17.18288 -16.72369 -16.37896 -16.36270 -16.15821 -16.03983 -15.32690 -15.07479 -14.66049 -14.54227 -14.19739 -14.09665 -13.97856 -13.75471 -13.49682 -13.20317 -12.97971 -12.86993 -12.73741 -12.57642 -12.38365 -12.10765 -12.08031 -12.00887 -11.92641 -11.71651 -11.25181 -11.15466 -10.95793 -10.13431 -10.08843 -9.41294 -9.30546 -8.58756 -8.10562 -6.15569 -0.60658 0.23829 1.03774 1.16140 1.41887 1.44741 1.52795 1.56347 1.62225 2.27218 2.69838 2.90780 2.98037 3.01886 3.25309 3.73203 3.80268 3.87885 3.99681 4.07311 4.27834 4.33071 4.40800 4.45508 4.49307 4.56156 4.64324 4.67400 4.78782 4.81683 5.01054 5.05838 5.09696 5.14873 5.22273 5.32262 5.39023 5.41827 5.60318 5.64553 5.90301 5.92934 6.13211 6.20881 6.36711 6.37948 6.55224 6.86107 6.99016 7.02619 7.29888 8.42532 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.003755 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.755236 B = 7454.253460 C = 9341.832542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C 0.165 3.835 4 N -0.394 5.394 5 H 0.463 0.537 6 N -0.339 5.339 7 C 0.236 3.764 8 N -0.517 5.517 9 C 0.203 3.797 10 C -0.136 4.136 11 C -0.059 4.059 12 C -0.185 4.185 13 C -0.178 4.178 14 C 0.004 3.996 15 O -0.341 6.341 16 C 0.025 3.975 17 C 0.059 3.941 18 C -0.485 4.485 19 H 0.068 0.932 20 C 0.039 3.961 21 N -0.826 5.826 22 Si 0.972 3.028 23 H -0.262 1.262 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.153 4.153 27 C 0.021 3.979 28 C -0.270 4.270 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.286 0.714 41 H 0.116 0.884 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.970 -16.190 -10.447 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C 0.020 3.980 4 N -0.097 5.097 5 H 0.312 0.688 6 N -0.172 5.172 7 C -0.024 4.024 8 N -0.230 5.230 9 C 0.021 3.979 10 C -0.140 4.140 11 C -0.060 4.060 12 C -0.204 4.204 13 C -0.196 4.196 14 C -0.041 4.041 15 O -0.256 6.256 16 C -0.069 4.069 17 C 0.056 3.944 18 C -0.515 4.515 19 H 0.086 0.914 20 C -0.175 4.175 21 N -0.453 5.453 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.193 1.193 25 H -0.188 1.188 26 C -0.173 4.173 27 C -0.007 4.007 28 C -0.282 4.282 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.133 0.867 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.347 -14.421 -12.113 18.979 hybrid contribution -0.198 -0.053 1.143 1.162 sum -2.545 -14.473 -10.970 18.338 Atomic orbital electron populations 1.21794 0.92715 1.04025 1.02206 1.20651 0.97159 0.85013 1.07190 1.21929 0.94263 0.96113 0.85657 1.46315 1.44663 1.08510 1.10185 0.68778 1.77622 1.31085 0.98355 1.10108 1.21641 0.97499 0.91191 0.92078 1.67296 1.22267 1.30957 1.02500 1.23153 0.88736 0.96478 0.89582 1.19464 1.05437 0.95256 0.93838 1.18402 1.02634 0.94994 0.89963 1.20574 1.08666 0.97048 0.94090 1.20897 1.06695 0.97827 0.94211 1.19551 1.05532 0.96696 0.82320 1.85912 1.82262 1.36617 1.20834 1.23094 0.98547 0.84449 1.00855 1.17324 0.92996 0.91062 0.92971 1.19468 1.42990 0.91324 0.97732 0.91390 1.26545 0.93321 1.01801 0.95852 1.69856 1.31886 1.22932 1.20666 0.85401 0.79586 0.76646 0.78997 1.18674 1.19306 1.18831 1.21180 1.05383 0.98303 0.92414 1.21187 0.92019 0.98350 0.89116 1.20302 1.15794 0.96606 0.95500 0.93394 0.92459 0.88801 0.87040 0.86293 0.82705 0.84760 0.84869 0.92609 0.87399 0.92941 0.90345 0.86677 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 71.98 0.71 -0.64 16 2 C -0.06 -0.55 6.50 29.85 0.19 -0.35 16 3 C 0.16 3.29 6.53 42.28 0.28 3.56 16 4 N -0.39 -8.15 7.17 -46.80 -0.34 -8.49 16 5 H 0.46 4.96 8.96 -213.45 -1.91 3.04 16 6 N -0.34 -11.44 12.69 -52.81 -0.67 -12.11 16 7 C 0.24 9.10 8.60 136.85 1.18 10.28 16 8 N -0.52 -22.42 10.42 -188.99 -1.97 -24.39 16 9 C 0.20 8.68 10.52 85.43 0.90 9.58 16 10 C -0.14 -5.40 5.88 -20.00 -0.12 -5.52 16 11 C -0.06 -2.60 5.87 -20.08 -0.12 -2.72 16 12 C -0.18 -7.19 9.41 22.64 0.21 -6.97 16 13 C -0.18 -7.19 9.01 22.29 0.20 -6.99 16 14 C 0.00 0.18 6.72 23.11 0.16 0.33 16 15 O -0.34 -15.42 9.76 -89.21 -0.87 -16.29 16 16 C 0.03 0.78 9.81 113.37 1.11 1.89 16 17 C 0.06 3.20 5.58 -21.23 -0.12 3.08 16 18 C -0.49 -27.08 8.71 23.39 0.20 -26.87 16 19 H 0.07 3.81 7.64 -2.91 -0.02 3.79 16 20 C 0.04 2.02 5.14 85.23 0.44 2.45 16 21 N -0.83 -44.03 10.97 21.82 0.24 -43.79 16 22 Si 0.97 40.21 29.59 68.60 2.03 42.24 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 C -0.15 -7.89 8.05 22.92 0.18 -7.71 16 27 C 0.02 0.66 9.58 22.97 0.22 0.88 16 28 C -0.27 -8.24 6.26 -20.23 -0.13 -8.37 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.16 6.93 6.08 -2.91 -0.02 6.91 16 35 H 0.13 4.03 6.18 -2.91 -0.02 4.01 16 36 H 0.13 4.34 6.27 -2.91 -0.02 4.32 16 37 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 38 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 1.47 7.66 -2.39 -0.02 1.45 16 40 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 41 H 0.12 6.18 4.24 -2.91 -0.01 6.16 16 42 H 0.17 3.97 6.21 -2.91 -0.02 3.96 16 Total: -1.00 -76.08 352.04 3.11 -72.97 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.82 Total: 23.93 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 5.50 Total: -34.08 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.74 Total: -88.78 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.87 Total: -16.29 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -76.08 3.11 -72.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242824004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.204 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds