Wall clock time and date at job start Tue Mar 31 2020 15:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47215 * 2 1 4 4 N 1.33880 * 126.12364 * 264.99513 * 3 2 1 5 5 H 0.96994 * 124.99305 * 0.04345 * 4 3 2 6 6 N 1.39878 * 110.01255 * 179.97438 * 4 3 2 7 7 C 1.31990 * 109.17407 * 0.02562 * 6 4 3 8 8 N 1.34380 * 134.08698 * 180.02562 * 7 6 4 9 9 C 1.30509 * 121.59123 * 179.97438 * 8 7 6 10 10 C 1.40834 * 122.37460 * 0.02562 * 9 8 7 11 11 C 1.47652 * 119.92849 * 180.02562 * 10 9 8 12 12 C 1.39311 * 120.23705 * 129.71857 * 11 10 9 13 13 C 1.37835 * 120.15894 * 179.76195 * 12 11 10 14 14 C 1.39536 * 120.63117 * 0.51687 * 13 12 11 15 15 O 1.35879 * 119.76419 * 179.71610 * 14 13 12 16 16 C 1.42904 * 116.99928 * 0.02644 * 15 14 13 17 17 C 1.37851 * 120.46876 * 359.74147 * 14 13 12 18 18 C 1.40667 * 119.82627 * 359.97438 * 17 14 13 19 19 C 1.40821 * 120.31328 * 179.97438 * 18 17 14 20 20 H 1.07996 * 120.00173 * 153.44992 * 19 18 17 21 21 C 1.39973 * 119.99591 * 333.45874 * 19 18 17 22 22 N 1.30826 * 120.00163 * 343.59838 * 21 19 18 23 23 Si 1.86802 * 119.99688 * 163.59341 * 21 19 18 24 24 H 1.48497 * 109.47093 * 94.63835 * 23 21 19 25 25 H 1.48502 * 109.47133 * 214.63417 * 23 21 19 26 26 H 1.48495 * 109.47519 * 334.63380 * 23 21 19 27 27 C 1.38936 * 120.14227 * 359.97028 * 10 9 8 28 28 C 1.38529 * 126.13293 * 84.99952 * 3 2 1 29 29 H 1.08993 * 109.47067 * 60.00105 * 1 2 3 30 30 H 1.08997 * 109.47711 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46886 * 300.00663 * 1 2 3 32 32 H 1.08992 * 109.46977 * 239.99217 * 2 1 3 33 33 H 1.09005 * 109.46686 * 119.99871 * 2 1 3 34 34 H 1.08002 * 118.81340 * 179.97438 * 9 8 7 35 35 H 1.08006 * 119.91944 * 359.97438 * 12 11 10 36 36 H 1.08005 * 119.68052 * 180.25460 * 13 12 11 37 37 H 1.08996 * 109.47361 * 59.99801 * 16 15 14 38 38 H 1.09006 * 109.47003 * 179.97438 * 16 15 14 39 39 H 1.09001 * 109.47060 * 299.99493 * 16 15 14 40 40 H 1.07998 * 120.09066 * 180.02562 * 17 14 13 41 41 H 0.96999 * 120.00002 * 180.02562 * 22 21 19 42 42 H 1.07993 * 121.06142 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3844 2.1335 -1.0773 5 1 2.3547 1.8111 -1.9916 6 7 2.7999 3.4120 -0.6907 7 6 2.7152 3.5167 0.6223 8 7 2.9798 4.4985 1.5010 9 6 2.8026 4.3343 2.7835 10 6 2.3263 3.1271 3.3305 11 6 2.1452 3.0006 4.7904 12 6 0.9435 2.5240 5.3096 13 6 0.7780 2.4020 6.6725 14 6 1.8028 2.7624 7.5482 15 8 1.6185 2.6403 8.8889 16 6 0.3547 2.1371 9.3269 17 6 3.0006 3.2419 7.0629 18 6 3.1927 3.3688 5.6752 19 6 4.4121 3.8580 5.1683 20 1 4.7387 3.5733 4.1791 21 6 5.2008 4.7132 5.9467 22 7 4.6836 5.3130 6.9880 23 14 6.9918 4.9979 5.4986 24 1 7.1046 6.2201 4.6628 25 1 7.7908 5.1706 6.7384 26 1 7.5037 3.8294 4.7386 27 6 2.0254 2.0552 2.4992 28 6 2.2127 2.2235 1.1146 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.0301 5.1535 3.4495 35 1 0.1409 2.2463 4.6424 36 1 -0.1554 2.0278 7.0665 37 1 0.1995 1.1389 8.9178 38 1 0.3402 2.0895 10.4158 39 1 -0.4394 2.7990 8.9812 40 1 3.7898 3.5187 7.7462 41 1 5.2301 5.9059 7.5272 42 1 1.6589 1.1230 2.9027 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242824754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:41 Heat of formation + Delta-G solvation = 72.867714 kcal Electronic energy + Delta-G solvation = -26387.713341 eV Core-core repulsion = 22719.954449 eV Total energy + Delta-G solvation = -3667.758893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12994 -38.88128 -37.81772 -36.17653 -34.26902 -33.67943 -31.95572 -30.85577 -29.81011 -29.45599 -27.81139 -26.14590 -25.27273 -24.62154 -23.47462 -22.14593 -21.03632 -20.06405 -19.38184 -17.78595 -17.58972 -16.91200 -16.18835 -15.48608 -15.29620 -14.93873 -14.90754 -14.80716 -14.59903 -14.43190 -13.66815 -13.37871 -12.96441 -12.93784 -12.71903 -12.39665 -12.28615 -11.96912 -11.85001 -11.74214 -11.44882 -11.40109 -11.23508 -11.11358 -10.97784 -10.68579 -10.55170 -10.25662 -10.00685 -9.85401 -9.56144 -9.22711 -8.58716 -8.51816 -7.64334 -7.52236 -6.96491 -6.60650 -4.50183 0.85352 2.05225 2.62408 2.75431 2.76128 3.05514 3.07400 3.11554 3.18623 3.88674 4.26512 4.36611 4.41973 4.47632 4.54633 4.69883 5.02053 5.14796 5.30364 5.45654 5.51215 5.60068 5.61979 5.67261 5.70514 5.78523 5.86121 5.88380 5.96683 6.01285 6.15658 6.29095 6.40509 6.66210 6.77283 6.88909 6.99533 7.11429 7.23260 7.31228 7.34342 7.61102 7.71756 7.83618 7.89665 7.95589 8.28346 8.64544 8.65939 8.74047 8.82278 10.04068 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.004684 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.643314 B = 5975.847924 C = 8178.132140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C 0.107 3.893 4 N -0.423 5.423 5 H 0.438 0.562 6 N -0.305 5.305 7 C 0.264 3.736 8 N -0.494 5.494 9 C 0.229 3.771 10 C -0.062 4.062 11 C -0.200 4.200 12 C -0.038 4.038 13 C -0.316 4.316 14 C 0.134 3.866 15 O -0.329 6.329 16 C 0.037 3.963 17 C -0.191 4.191 18 C 0.157 3.843 19 C -0.448 4.448 20 H 0.085 0.915 21 C 0.079 3.921 22 N -0.774 5.774 23 Si 0.903 3.097 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.259 1.259 27 C -0.037 4.037 28 C -0.234 4.234 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.174 0.826 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.127 0.873 41 H 0.285 0.715 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -9.218 -6.672 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.033 4.033 4 N -0.125 5.125 5 H 0.282 0.718 6 N -0.137 5.137 7 C 0.003 3.997 8 N -0.207 5.207 9 C 0.044 3.956 10 C -0.066 4.066 11 C -0.202 4.202 12 C -0.057 4.057 13 C -0.335 4.335 14 C 0.090 3.910 15 O -0.244 6.244 16 C -0.059 4.059 17 C -0.211 4.211 18 C 0.154 3.846 19 C -0.476 4.476 20 H 0.103 0.897 21 C -0.141 4.141 22 N -0.397 5.397 23 Si 0.727 3.273 24 H -0.191 1.191 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.065 4.065 28 C -0.246 4.246 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.190 0.810 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.144 0.856 41 H 0.096 0.904 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.440 -7.579 -7.966 12.267 hybrid contribution -0.022 -1.251 0.396 1.312 sum -5.462 -8.830 -7.569 12.849 Atomic orbital electron populations 1.21759 0.93669 1.02314 1.02843 1.20257 0.96721 0.88746 1.04204 1.21140 0.99687 0.94953 0.87555 1.46178 1.47614 1.10099 1.08596 0.71773 1.77595 1.29298 0.95742 1.11061 1.21418 0.96759 0.90238 0.91317 1.67439 1.21197 1.29540 1.02477 1.23518 0.86318 0.96692 0.89053 1.19403 0.99722 0.93384 0.94051 1.18323 0.95523 1.16881 0.89471 1.20332 0.95238 0.96444 0.93642 1.20347 0.99552 1.19802 0.93848 1.19007 0.95059 0.96553 0.80352 1.86012 1.34928 1.81206 1.22214 1.22762 0.85685 0.98076 0.99393 1.20494 0.95786 1.09067 0.95756 1.17201 0.90935 0.86708 0.89783 1.19533 1.02494 1.23657 1.01927 0.89739 1.25945 1.00425 0.94005 0.93768 1.69822 1.37446 1.19234 1.13227 0.86344 0.81701 0.80065 0.79165 1.19081 1.19888 1.18304 1.20939 0.98271 0.98081 0.89229 1.20046 1.13501 0.96543 0.94513 0.92722 0.91577 0.91601 0.90497 0.88676 0.80957 0.88909 0.88563 0.93705 0.89927 0.93608 0.85575 0.90402 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.82 16 2 C -0.06 -0.53 6.50 -27.88 -0.18 -0.71 16 3 C 0.11 1.43 6.54 -81.59 -0.53 0.89 16 4 N -0.42 -5.63 7.17 33.89 0.24 -5.38 16 5 H 0.44 3.84 8.96 -182.77 -1.64 2.20 16 6 N -0.31 -5.66 12.68 31.97 0.41 -5.26 16 7 C 0.26 5.39 8.60 -156.39 -1.34 4.04 16 8 N -0.49 -10.78 10.42 -11.02 -0.11 -10.89 16 9 C 0.23 4.86 9.07 -17.13 -0.16 4.70 16 10 C -0.06 -1.28 4.92 -104.81 -0.52 -1.79 16 11 C -0.20 -4.44 5.52 -104.22 -0.57 -5.01 16 12 C -0.04 -0.79 9.49 -39.33 -0.37 -1.16 16 13 C -0.32 -6.59 9.02 -39.25 -0.35 -6.95 16 14 C 0.13 3.07 6.67 -39.24 -0.26 2.81 16 15 O -0.33 -6.92 10.48 -19.36 -0.20 -7.12 16 16 C 0.04 0.56 9.80 101.05 0.99 1.55 16 17 C -0.19 -4.77 8.58 -38.81 -0.33 -5.10 16 18 C 0.16 3.84 5.55 -106.57 -0.59 3.25 16 19 C -0.45 -10.91 7.06 -37.96 -0.27 -11.18 16 20 H 0.08 2.06 6.62 -52.49 -0.35 1.71 16 21 C 0.08 1.87 5.15 -17.33 -0.09 1.78 16 22 N -0.77 -18.83 11.01 55.55 0.61 -18.22 16 23 Si 0.90 18.21 29.59 -169.99 -5.03 13.18 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.04 -0.68 9.69 -38.38 -0.37 -1.05 16 28 C -0.23 -4.13 6.26 -105.20 -0.66 -4.79 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.17 3.70 7.23 -52.49 -0.38 3.32 16 35 H 0.09 1.68 8.03 -52.48 -0.42 1.26 16 36 H 0.10 1.76 6.25 -52.48 -0.33 1.43 16 37 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.66 7.64 -51.93 -0.40 0.27 16 40 H 0.13 3.32 6.26 -52.49 -0.33 2.99 16 41 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 42 H 0.13 1.99 8.05 -52.49 -0.42 1.57 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -30.14 354.83 -10.32 -40.46 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.33 Total: 7.40 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -5.25 Total: -19.52 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 1.14 Total: -39.75 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.20 Total: -7.12 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.14 -10.32 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242824754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.325 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds