Wall clock time and date at job start Tue Mar 31 2020 14:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35516 * 117.00184 * 2 1 4 4 C 1.39128 * 120.48569 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.64928 * 180.02562 * 4 3 2 6 6 C 1.40113 * 119.56989 * 359.97438 * 5 4 3 7 7 C 1.48167 * 119.52563 * 180.02562 * 6 5 4 8 8 C 1.40152 * 119.84181 * 359.71996 * 7 6 5 9 9 C 1.36085 * 120.55811 * 179.72190 * 8 7 6 10 10 C 1.40258 * 120.01766 * 0.58898 * 9 8 7 11 11 C 1.41524 * 133.40183 * 179.71304 * 10 9 8 12 12 C 1.50700 * 125.64072 * 359.96654 * 11 10 9 13 13 N 1.30166 * 108.70946 * 179.97438 * 11 10 9 14 14 N 1.40015 * 109.79314 * 0.02562 * 13 11 10 15 15 C 1.46500 * 125.96595 * 179.97438 * 14 13 11 16 16 C 1.37241 * 108.06485 * 0.02562 * 14 13 11 17 17 C 1.38860 * 119.84974 * 180.02562 * 7 6 5 18 18 N 1.32224 * 120.95791 * 0.02562 * 6 5 4 19 19 C 1.33574 * 121.45285 * 359.66149 * 18 6 5 20 20 C 1.40991 * 119.83459 * 180.30685 * 19 18 6 21 21 H 1.08002 * 120.00312 * 180.31586 * 20 19 18 22 22 C 1.40014 * 119.99903 * 0.31480 * 20 19 18 23 23 N 1.30788 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00335 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47145 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47507 * 119.99815 * 24 22 20 27 27 H 1.48502 * 109.47025 * 240.00191 * 24 22 20 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99917 * 1 2 3 31 31 H 1.08002 * 120.67149 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.21458 * 180.02562 * 5 4 3 33 33 H 1.07994 * 119.71778 * 0.02776 * 8 7 6 34 34 H 1.08000 * 119.99010 * 180.26086 * 9 8 7 35 35 H 1.08999 * 109.46964 * 270.02187 * 12 11 10 36 36 H 1.08995 * 109.47397 * 30.02521 * 12 11 10 37 37 H 1.09001 * 109.46757 * 150.02279 * 12 11 10 38 38 H 1.08995 * 109.47468 * 270.02963 * 15 14 13 39 39 H 1.08996 * 109.47135 * 30.03221 * 15 14 13 40 40 H 1.09006 * 109.46939 * 150.02821 * 15 14 13 41 41 H 1.08004 * 120.19074 * 359.95202 * 17 7 6 42 42 H 0.97002 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 1.2965 2.3807 0.0005 5 6 1.9636 3.5922 0.0000 6 6 3.3646 3.6101 -0.0006 7 6 4.0783 4.9086 -0.0006 8 6 3.3488 6.1053 -0.0060 9 6 3.9893 7.3060 -0.0004 10 6 5.3911 7.3535 -0.0016 11 6 6.3281 8.4141 -0.0022 12 6 5.9917 9.8831 -0.0024 13 7 7.5285 7.9107 -0.0028 14 7 7.4563 6.5125 -0.0032 15 6 8.5960 5.5920 -0.0044 16 6 6.1313 6.1548 -0.0035 17 6 5.4667 4.9342 -0.0017 18 7 4.0592 2.4850 -0.0011 19 6 3.4558 1.2933 0.0057 20 6 4.2300 0.1151 0.0115 21 1 3.7450 -0.8499 0.0118 22 6 5.6278 0.1959 0.0168 23 7 6.2152 1.3645 0.0159 24 14 6.6537 -1.3651 0.0252 25 1 5.7556 -2.5477 0.0255 26 1 7.5154 -1.3977 -1.1838 27 1 7.5057 -1.3909 1.2412 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2170 2.3460 0.0014 32 1 1.4082 4.5185 0.0008 33 1 2.2694 6.0743 -0.0097 34 1 3.4181 8.2225 -0.0004 35 1 5.9098 10.2369 -1.0301 36 1 5.0436 10.0388 0.5122 37 1 6.7786 10.4360 0.5107 38 1 8.8782 5.3645 -1.0323 39 1 9.4380 6.0557 0.5093 40 1 8.3197 4.6710 0.5089 41 1 6.0269 4.0108 -0.0017 42 1 7.1837 1.4205 0.0192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244229660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:02 Heat of formation + Delta-G solvation = 86.912280 kcal Electronic energy + Delta-G solvation = -26378.518425 eV Core-core repulsion = 22711.368551 eV Total energy + Delta-G solvation = -3667.149875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05054 -39.04347 -37.37754 -36.07714 -33.98664 -33.69064 -30.83629 -30.64851 -29.77535 -29.25108 -28.39011 -26.59376 -25.65439 -25.03293 -22.80984 -22.08928 -21.05984 -20.20438 -19.27691 -17.58610 -16.92583 -16.55339 -16.25649 -15.76389 -15.31820 -14.83224 -14.81715 -14.51148 -13.94295 -13.69915 -13.47447 -13.31766 -13.10619 -12.98352 -12.70454 -12.58056 -12.44980 -12.16655 -12.15503 -11.81985 -11.35189 -11.34273 -11.20763 -11.11061 -10.68520 -10.61355 -10.43128 -10.37525 -10.35105 -9.85289 -9.55583 -9.45862 -8.35234 -8.16854 -7.83758 -7.44907 -6.90214 -6.52328 -4.47021 1.18811 1.94374 2.58720 2.70447 2.75906 3.03225 3.07116 3.12445 3.18744 3.91562 4.29262 4.34304 4.64827 4.77812 4.95110 5.05833 5.27843 5.33947 5.44784 5.59425 5.63069 5.65189 5.66369 5.68106 5.76763 5.80372 5.82414 5.88373 5.94790 5.99914 6.07678 6.14226 6.23170 6.57056 6.61182 6.71007 6.88774 6.90101 7.13298 7.16517 7.29923 7.38391 7.45556 7.54636 7.80891 7.98349 8.12627 8.23947 8.63512 8.91990 9.91466 10.22056 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.004276 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.243592 B = 6546.195207 C = 8770.667045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.023 4.023 4 C -0.150 4.150 5 C -0.263 4.263 6 C 0.145 3.855 7 C 0.032 3.968 8 C -0.142 4.142 9 C -0.059 4.059 10 C -0.186 4.186 11 C 0.087 3.913 12 C -0.070 4.070 13 N -0.269 5.269 14 N -0.407 5.407 15 C 0.114 3.886 16 C 0.125 3.875 17 C -0.107 4.107 18 N -0.448 5.448 19 C 0.253 3.747 20 C -0.412 4.412 21 H 0.092 0.908 22 C 0.069 3.931 23 N -0.720 5.720 24 Si 0.909 3.091 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.158 0.842 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 8.350 0.067 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.071 4.071 4 C -0.174 4.174 5 C -0.286 4.286 6 C 0.004 3.996 7 C 0.028 3.972 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.193 4.193 11 C -0.088 4.088 12 C -0.128 4.128 13 N -0.085 5.085 14 N -0.196 5.196 15 C -0.028 4.028 16 C 0.011 3.989 17 C -0.130 4.130 18 N -0.163 5.163 19 C 0.125 3.875 20 C -0.443 4.443 21 H 0.110 0.890 22 C -0.155 4.155 23 N -0.342 5.342 24 Si 0.733 3.267 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.176 0.824 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.419 8.393 0.065 8.513 hybrid contribution -1.562 -0.817 -0.022 1.763 sum -0.143 7.576 0.044 7.577 Atomic orbital electron populations 1.22775 0.81572 1.01978 1.00012 1.85942 1.18431 1.27819 1.89904 1.20391 0.93715 0.83282 1.09753 1.20884 0.97862 0.92574 1.06038 1.21023 0.94085 0.96364 1.17156 1.19608 0.89456 0.91909 0.98602 1.18536 0.91672 0.91734 0.95285 1.20760 1.00008 0.91295 1.04107 1.20072 0.91262 0.97615 0.99006 1.18784 0.94573 0.91786 1.14185 1.22221 0.89671 0.96405 1.00499 1.20167 1.02273 0.87514 1.02889 1.76469 1.22148 0.89004 1.20894 1.48098 1.03943 1.02812 1.64704 1.21715 0.86568 0.91618 1.02859 1.18942 0.84218 0.95573 1.00214 1.20640 0.94064 0.95479 1.02790 1.68880 1.34770 0.95293 1.17356 1.18123 0.84996 0.92040 0.92372 1.19563 0.90598 0.93047 1.41135 0.89023 1.26031 0.98679 0.97278 0.93539 1.70110 1.10169 1.24591 1.29314 0.86240 0.79787 0.82196 0.78486 1.18275 1.19853 1.19860 0.89807 0.94101 0.94092 0.87666 0.87916 0.85567 0.86151 0.90528 0.90386 0.90940 0.91521 0.90082 0.89165 0.82401 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.83 101.05 0.99 1.52 16 2 O -0.31 -6.81 9.61 -18.24 -0.18 -6.99 16 3 C -0.02 -0.55 6.74 -38.04 -0.26 -0.80 16 4 C -0.15 -3.25 9.11 -39.23 -0.36 -3.61 16 5 C -0.26 -5.71 9.45 -38.85 -0.37 -6.07 16 6 C 0.15 3.44 6.73 -82.92 -0.56 2.88 16 7 C 0.03 0.67 5.88 -104.87 -0.62 0.05 16 8 C -0.14 -2.48 9.33 -39.64 -0.37 -2.85 16 9 C -0.06 -0.93 10.03 -39.60 -0.40 -1.32 16 10 C -0.19 -3.23 6.11 -106.88 -0.65 -3.88 16 11 C 0.09 1.36 7.23 -82.05 -0.59 0.76 16 12 C -0.07 -0.73 10.44 36.01 0.38 -0.36 16 13 N -0.27 -4.62 12.44 33.90 0.42 -4.20 16 14 N -0.41 -7.18 4.07 -65.48 -0.27 -7.45 16 15 C 0.11 1.58 11.45 59.85 0.69 2.26 16 16 C 0.12 2.41 6.88 -84.17 -0.58 1.83 16 17 C -0.11 -2.26 9.54 -39.08 -0.37 -2.63 16 18 N -0.45 -11.78 6.87 -7.57 -0.05 -11.83 16 19 C 0.25 6.75 6.56 -84.86 -0.56 6.19 16 20 C -0.41 -10.80 8.94 -37.87 -0.34 -11.14 16 21 H 0.09 2.35 7.31 -52.49 -0.38 1.97 16 22 C 0.07 1.69 5.50 -17.33 -0.10 1.59 16 23 N -0.72 -17.85 11.05 55.55 0.61 -17.23 16 24 Si 0.91 18.16 29.56 -169.99 -5.02 13.14 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 30 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 31 H 0.11 1.94 6.43 -52.49 -0.34 1.60 16 32 H 0.10 1.92 6.13 -52.48 -0.32 1.59 16 33 H 0.13 1.96 6.11 -52.49 -0.32 1.64 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.16 3.61 7.09 -52.48 -0.37 3.23 16 42 H 0.27 6.01 8.29 -40.82 -0.34 5.67 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -30.87 356.44 -8.22 -39.09 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.05 Total: 5.69 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -4.06 Total: -15.58 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.72 Total: -40.72 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.18 Total: -6.99 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.87 -8.22 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244229660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.004 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds