Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35516 * 117.00184 * 2 1 4 4 C 1.39128 * 120.48569 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.64928 * 180.02562 * 4 3 2 6 6 C 1.40113 * 119.56989 * 359.97438 * 5 4 3 7 7 C 1.48167 * 119.52563 * 180.02562 * 6 5 4 8 8 C 1.40152 * 119.84181 * 359.71996 * 7 6 5 9 9 C 1.36085 * 120.55811 * 179.72190 * 8 7 6 10 10 C 1.40258 * 120.01766 * 0.58898 * 9 8 7 11 11 C 1.41524 * 133.40183 * 179.71304 * 10 9 8 12 12 C 1.50700 * 125.64072 * 359.96654 * 11 10 9 13 13 N 1.30166 * 108.70946 * 179.97438 * 11 10 9 14 14 N 1.40015 * 109.79314 * 0.02562 * 13 11 10 15 15 C 1.46500 * 125.96595 * 179.97438 * 14 13 11 16 16 C 1.37241 * 108.06485 * 0.02562 * 14 13 11 17 17 C 1.38860 * 119.84974 * 180.02562 * 7 6 5 18 18 N 1.32224 * 120.95791 * 0.02562 * 6 5 4 19 19 C 1.33574 * 121.45285 * 359.66149 * 18 6 5 20 20 C 1.40991 * 119.83459 * 180.30685 * 19 18 6 21 21 H 1.08002 * 120.00312 * 180.31586 * 20 19 18 22 22 C 1.40014 * 119.99903 * 0.31480 * 20 19 18 23 23 N 1.30788 * 119.99866 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00335 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47145 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47507 * 119.99815 * 24 22 20 27 27 H 1.48502 * 109.47025 * 240.00191 * 24 22 20 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99917 * 1 2 3 31 31 H 1.08002 * 120.67149 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.21458 * 180.02562 * 5 4 3 33 33 H 1.07994 * 119.71778 * 0.02776 * 8 7 6 34 34 H 1.08000 * 119.99010 * 180.26086 * 9 8 7 35 35 H 1.08999 * 109.46964 * 270.02187 * 12 11 10 36 36 H 1.08995 * 109.47397 * 30.02521 * 12 11 10 37 37 H 1.09001 * 109.46757 * 150.02279 * 12 11 10 38 38 H 1.08995 * 109.47468 * 270.02963 * 15 14 13 39 39 H 1.08996 * 109.47135 * 30.03221 * 15 14 13 40 40 H 1.09006 * 109.46939 * 150.02821 * 15 14 13 41 41 H 1.08004 * 120.19074 * 359.95202 * 17 7 6 42 42 H 0.97002 * 119.99758 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 1.2965 2.3807 0.0005 5 6 1.9636 3.5922 0.0000 6 6 3.3646 3.6101 -0.0006 7 6 4.0783 4.9086 -0.0006 8 6 3.3488 6.1053 -0.0060 9 6 3.9893 7.3060 -0.0004 10 6 5.3911 7.3535 -0.0016 11 6 6.3281 8.4141 -0.0022 12 6 5.9917 9.8831 -0.0024 13 7 7.5285 7.9107 -0.0028 14 7 7.4563 6.5125 -0.0032 15 6 8.5960 5.5920 -0.0044 16 6 6.1313 6.1548 -0.0035 17 6 5.4667 4.9342 -0.0017 18 7 4.0592 2.4850 -0.0011 19 6 3.4558 1.2933 0.0057 20 6 4.2300 0.1151 0.0115 21 1 3.7450 -0.8499 0.0118 22 6 5.6278 0.1959 0.0168 23 7 6.2152 1.3645 0.0159 24 14 6.6537 -1.3651 0.0252 25 1 5.7556 -2.5477 0.0255 26 1 7.5154 -1.3977 -1.1838 27 1 7.5057 -1.3909 1.2412 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2170 2.3460 0.0014 32 1 1.4082 4.5185 0.0008 33 1 2.2694 6.0743 -0.0097 34 1 3.4181 8.2225 -0.0004 35 1 5.9098 10.2369 -1.0301 36 1 5.0436 10.0388 0.5122 37 1 6.7786 10.4360 0.5107 38 1 8.8782 5.3645 -1.0323 39 1 9.4380 6.0557 0.5093 40 1 8.3197 4.6710 0.5089 41 1 6.0269 4.0108 -0.0017 42 1 7.1837 1.4205 0.0192 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244229660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = 69.265143 kcal Electronic energy + Delta-G solvation = -26379.283662 eV Core-core repulsion = 22711.368551 eV Total energy + Delta-G solvation = -3667.915112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36231 -40.74660 -38.91798 -37.61163 -35.50658 -35.15720 -32.46160 -32.32657 -31.13972 -30.27989 -29.95540 -28.07510 -27.33376 -26.22003 -24.35408 -23.66654 -22.60636 -21.75013 -20.57368 -19.33126 -18.50306 -18.00979 -17.71832 -17.33273 -16.57374 -16.51171 -16.33000 -16.05920 -15.35795 -15.07310 -14.77526 -14.61960 -14.44897 -14.26915 -14.19871 -14.16129 -13.55016 -13.41243 -13.30404 -13.14954 -12.95629 -12.91537 -12.73893 -12.46297 -12.44475 -12.11712 -11.88825 -11.85088 -11.63709 -11.53547 -11.25776 -10.80121 -10.03736 -9.80340 -9.62824 -8.81516 -8.57057 -8.30670 -6.35959 -0.26940 0.57272 0.93973 1.10292 1.39918 1.47587 1.48010 1.54252 1.69972 2.23690 2.73659 2.83097 3.07291 3.50550 3.63520 3.81777 3.87753 3.92668 4.21739 4.31323 4.32561 4.34600 4.39426 4.44589 4.49027 4.56438 4.61827 4.71399 4.74442 4.80682 4.86284 4.89494 4.93517 5.00251 5.09380 5.24944 5.35224 5.48184 5.52074 5.63451 5.69773 5.86251 5.97325 6.07333 6.16549 6.32172 6.40178 6.70246 6.81417 7.14211 8.11102 8.45180 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.004276 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.243592 B = 6546.195207 C = 8770.667045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C -0.040 4.040 4 C -0.148 4.148 5 C -0.254 4.254 6 C 0.118 3.882 7 C 0.010 3.990 8 C -0.148 4.148 9 C -0.036 4.036 10 C -0.196 4.196 11 C 0.094 3.906 12 C -0.069 4.069 13 N -0.288 5.288 14 N -0.420 5.420 15 C 0.110 3.890 16 C 0.104 3.896 17 C -0.131 4.131 18 N -0.475 5.475 19 C 0.214 3.786 20 C -0.452 4.452 21 H 0.083 0.917 22 C 0.028 3.972 23 N -0.750 5.750 24 Si 0.981 3.019 25 H -0.259 1.259 26 H -0.266 1.266 27 H -0.266 1.266 28 H 0.113 0.887 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 10.924 0.060 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.089 4.089 4 C -0.172 4.172 5 C -0.277 4.277 6 C -0.022 4.022 7 C 0.006 3.994 8 C -0.168 4.168 9 C -0.056 4.056 10 C -0.203 4.203 11 C -0.081 4.081 12 C -0.127 4.127 13 N -0.104 5.104 14 N -0.208 5.208 15 C -0.031 4.031 16 C -0.011 4.011 17 C -0.154 4.154 18 N -0.190 5.190 19 C 0.086 3.914 20 C -0.484 4.484 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.373 5.373 24 Si 0.802 3.198 25 H -0.183 1.183 26 H -0.191 1.191 27 H -0.191 1.191 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.189 0.811 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.144 0.856 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.186 10.982 0.058 10.984 hybrid contribution -1.194 -1.461 -0.022 1.887 sum -1.379 9.521 0.036 9.621 Atomic orbital electron populations 1.23138 0.78412 1.04443 1.01114 1.85887 1.21712 1.27204 1.89909 1.20461 0.93444 0.84879 1.10113 1.21293 0.99661 0.91635 1.04606 1.21476 0.93563 0.97981 1.14675 1.20221 0.90914 0.92373 0.98733 1.18697 0.91820 0.92081 0.96767 1.20955 1.01009 0.90408 1.04391 1.20555 0.90677 0.98791 0.95578 1.19228 0.95688 0.91537 1.13897 1.23039 0.88450 0.98413 0.98169 1.20418 1.03871 0.83806 1.04629 1.76470 1.23292 0.88592 1.22009 1.48415 1.04027 1.03494 1.64875 1.21863 0.86479 0.91202 1.03566 1.19062 0.85504 0.95747 1.00770 1.20404 0.94493 0.95270 1.05184 1.68828 1.36203 0.96002 1.17990 1.18561 0.86873 0.92539 0.93449 1.19717 0.91912 0.92861 1.43955 0.89870 1.26826 0.99169 1.00509 0.92823 1.70204 1.10697 1.26387 1.29994 0.85171 0.77907 0.77957 0.78774 1.18284 1.19072 1.19062 0.86887 0.92845 0.92836 0.83942 0.84196 0.83154 0.81146 0.88622 0.87907 0.89826 0.90784 0.87864 0.90112 0.85551 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.83 113.37 1.11 1.84 16 2 O -0.33 -14.96 9.61 -88.19 -0.85 -15.81 16 3 C -0.04 -1.99 6.74 23.27 0.16 -1.84 16 4 C -0.15 -6.28 9.11 22.50 0.21 -6.07 16 5 C -0.25 -10.78 9.45 22.74 0.22 -10.56 16 6 C 0.12 5.74 6.73 42.18 0.28 6.02 16 7 C 0.01 0.44 5.88 -20.03 -0.12 0.32 16 8 C -0.15 -4.85 9.33 22.23 0.21 -4.64 16 9 C -0.04 -1.00 10.03 22.26 0.22 -0.78 16 10 C -0.20 -6.43 6.11 -21.33 -0.13 -6.56 16 11 C 0.09 2.70 7.23 43.62 0.32 3.02 16 12 C -0.07 -1.15 10.44 71.24 0.74 -0.40 16 13 N -0.29 -9.56 12.44 -46.66 -0.58 -10.14 16 14 N -0.42 -15.03 4.07 -361.08 -1.47 -16.50 16 15 C 0.11 3.17 11.45 127.77 1.46 4.64 16 16 C 0.10 4.08 6.88 39.12 0.27 4.35 16 17 C -0.13 -5.81 9.54 22.60 0.22 -5.60 16 18 N -0.48 -26.47 6.87 -177.87 -1.22 -27.69 16 19 C 0.21 12.10 6.56 40.33 0.26 12.37 16 20 C -0.45 -25.31 8.94 23.38 0.21 -25.10 16 21 H 0.08 4.57 7.31 -2.91 -0.02 4.55 16 22 C 0.03 1.45 5.50 85.28 0.47 1.91 16 23 N -0.75 -39.86 11.05 21.84 0.24 -39.62 16 24 Si 0.98 39.13 29.56 68.60 2.03 41.16 16 25 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 26 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 27 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 28 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 30 H 0.05 1.48 7.69 -2.38 -0.02 1.46 16 31 H 0.14 4.83 6.43 -2.91 -0.02 4.81 16 32 H 0.14 4.75 6.13 -2.91 -0.02 4.73 16 33 H 0.15 4.09 6.11 -2.91 -0.02 4.07 16 34 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.13 6.35 7.09 -2.91 -0.02 6.33 16 42 H 0.28 13.21 8.29 -92.71 -0.77 12.44 16 Total: -1.00 -73.29 356.44 5.32 -67.97 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.06 Total: 27.71 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 6.11 Total: -27.09 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.03 Total: -93.94 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.85 Total: -15.81 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -73.29 5.32 -67.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244229660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.237 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds