Wall clock time and date at job start Tue Mar 31 2020 13:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.43203 * 120.00410 * 293.63482 * 3 2 1 5 5 N 3.51034 * 140.68652 * 293.64018 * 2 1 3 6 6 C 1.41149 * 120.00074 * 113.63572 * 3 2 1 7 7 C 1.38990 * 120.00208 * 173.85091 * 6 3 2 8 8 H 1.08008 * 120.00137 * 132.45092 * 7 6 3 9 9 C 1.40816 * 119.99720 * 312.17122 * 7 6 3 10 10 N 1.30341 * 119.99852 * 161.46151 * 9 7 6 11 11 Si 1.86793 * 120.00332 * 341.46158 * 9 7 6 12 12 H 1.48497 * 109.47132 * 95.27777 * 11 9 7 13 13 H 1.48495 * 109.47440 * 215.28136 * 11 9 7 14 14 H 1.48503 * 109.46871 * 335.28150 * 11 9 7 15 15 N 1.38232 * 119.99922 * 353.84586 * 6 3 2 16 16 C 1.46501 * 119.99948 * 184.47595 * 15 6 3 17 17 H 1.08998 * 109.54330 * 34.87842 * 16 15 6 18 18 C 1.53178 * 109.54576 * 274.69697 * 16 15 6 19 19 C 1.53097 * 109.16458 * 297.11499 * 18 16 15 20 20 O 1.42904 * 109.41426 * 302.39125 * 19 18 16 21 21 C 1.42912 * 114.09807 * 61.15901 * 20 19 18 22 22 H 1.08992 * 109.48301 * 58.83452 * 21 20 19 23 23 C 1.50699 * 109.47849 * 178.86113 * 21 20 19 24 24 C 1.38236 * 120.00445 * 39.72438 * 23 21 20 25 25 C 1.38230 * 119.99937 * 179.79258 * 24 23 21 26 26 C 1.38232 * 120.00107 * 0.45315 * 25 24 23 27 27 C 1.38230 * 120.00252 * 359.77716 * 26 25 24 28 28 C 1.38236 * 119.99682 * 219.99623 * 23 21 20 29 29 C 1.53097 * 109.41067 * 298.83775 * 21 20 19 30 30 H 0.96996 * 120.00234 * 180.02562 * 10 9 7 31 31 H 0.96998 * 120.00117 * 4.48062 * 15 6 3 32 32 H 1.09003 * 109.52199 * 57.01640 * 18 16 15 33 33 H 1.09002 * 109.52486 * 177.14706 * 18 16 15 34 34 H 1.09007 * 109.47728 * 62.36884 * 19 18 16 35 35 H 1.08991 * 109.48137 * 182.39308 * 19 18 16 36 36 H 1.08003 * 119.99212 * 359.97438 * 24 23 21 37 37 H 1.08007 * 119.99766 * 180.25590 * 25 24 23 38 38 H 1.08005 * 119.99943 * 179.79071 * 26 25 24 39 39 H 1.08002 * 120.00503 * 179.97438 * 27 26 25 40 40 H 1.07997 * 120.00115 * 359.97438 * 28 23 21 41 41 H 1.08999 * 109.52429 * 297.70391 * 29 21 20 42 42 H 1.09001 * 109.52072 * 177.51225 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2843 -0.4962 1.1361 5 7 3.8520 -0.8918 2.0374 6 6 3.2735 0.4910 -1.1198 7 6 4.6573 0.6112 -1.0713 8 1 5.2608 0.2362 -1.8848 9 6 5.2722 1.2271 0.0357 10 7 6.5392 1.0306 0.2703 11 14 4.2721 2.3255 1.1681 12 1 3.7944 1.5342 2.3303 13 1 5.1207 3.4460 1.6473 14 1 3.1060 2.8697 0.4269 15 7 2.5881 0.8517 -2.2648 16 6 3.3263 1.2674 -3.4600 17 1 4.2526 0.6976 -3.5330 18 6 3.6498 2.7619 -3.3686 19 6 2.3426 3.5584 -3.3437 20 8 1.5796 3.2559 -4.5135 21 6 1.2075 1.8809 -4.6280 22 1 0.6196 1.5897 -3.7577 23 6 0.3874 1.6845 -5.8770 24 6 0.7270 2.3520 -7.0390 25 6 -0.0227 2.1685 -8.1857 26 6 -1.1176 1.3249 -8.1681 27 6 -1.4601 0.6611 -7.0050 28 6 -0.7078 0.8413 -5.8593 29 6 2.4691 1.0170 -4.7047 30 1 6.9627 1.4545 1.0330 31 1 1.6185 0.8296 -2.2769 32 1 4.2130 2.9575 -2.4561 33 1 4.2425 3.0599 -4.2335 34 1 1.7697 3.2890 -2.4563 35 1 2.5671 4.6247 -3.3216 36 1 1.5799 3.0145 -7.0515 37 1 0.2451 2.6869 -9.0947 38 1 -1.7054 1.1842 -9.0632 39 1 -2.3157 0.0023 -6.9911 40 1 -0.9755 0.3229 -4.9505 41 1 3.0370 1.2800 -5.5971 42 1 2.1880 -0.0353 -4.7476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256801951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:06 Heat of formation + Delta-G solvation = 38.407610 kcal Electronic energy + Delta-G solvation = -26790.387686 eV Core-core repulsion = 23121.134491 eV Total energy + Delta-G solvation = -3669.253195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.25028 -38.78103 -37.23417 -35.32712 -34.91845 -33.76418 -32.87017 -32.29018 -30.98943 -29.53308 -28.83410 -26.98830 -24.82252 -23.70803 -22.66421 -21.48929 -21.27344 -19.72276 -18.48485 -17.54371 -17.23340 -16.47679 -16.12387 -15.79614 -15.49655 -15.26870 -14.72443 -14.47423 -14.29842 -13.83719 -13.44843 -13.28359 -13.14354 -12.89304 -12.76570 -12.67411 -12.43856 -12.36193 -11.99364 -11.94407 -11.76476 -11.58146 -11.43880 -11.27885 -11.11112 -11.05613 -10.88378 -10.72070 -10.60340 -10.29742 -10.20818 -9.68464 -9.43808 -9.26750 -9.01129 -8.76130 -7.32219 -6.80893 -5.31448 1.20618 1.31480 2.44576 3.02594 3.11562 3.18155 3.57690 3.69964 3.79333 3.82741 3.88637 3.99020 4.29133 4.45716 4.61028 4.79948 4.85885 4.92344 5.01615 5.07370 5.08410 5.16782 5.19319 5.30371 5.44844 5.48495 5.50320 5.61808 5.69624 5.85733 5.91781 5.96561 6.07663 6.12670 6.15594 6.23981 6.35960 6.40237 6.40568 6.52276 6.58621 6.88529 7.04008 7.24198 7.28788 7.75166 7.95101 8.29583 8.41364 8.79130 9.13279 9.65623 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.003827 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.619725 B = 7314.654431 C = 8080.987399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.303 3.697 3 C -0.317 4.317 4 C 0.319 3.681 5 N -0.511 5.511 6 C 0.415 3.585 7 C -0.464 4.464 8 H 0.113 0.887 9 C 0.111 3.889 10 N -0.762 5.762 11 Si 0.887 3.113 12 H -0.244 1.244 13 H -0.282 1.282 14 H -0.244 1.244 15 N -0.730 5.730 16 C 0.156 3.844 17 H 0.097 0.903 18 C -0.166 4.166 19 C 0.061 3.939 20 O -0.377 6.377 21 C 0.131 3.869 22 H 0.064 0.936 23 C -0.076 4.076 24 C -0.092 4.092 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.109 4.109 29 C -0.153 4.153 30 H 0.296 0.704 31 H 0.386 0.614 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 5.666 -16.500 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.004 4.004 3 C -0.337 4.337 4 C 0.009 3.991 5 N -0.193 5.193 6 C 0.300 3.700 7 C -0.496 4.496 8 H 0.130 0.870 9 C -0.117 4.117 10 N -0.383 5.383 11 Si 0.709 3.291 12 H -0.168 1.168 13 H -0.208 1.208 14 H -0.167 1.167 15 N -0.356 5.356 16 C 0.051 3.949 17 H 0.115 0.885 18 C -0.205 4.205 19 C -0.015 4.015 20 O -0.296 6.296 21 C 0.073 3.927 22 H 0.082 0.918 23 C -0.076 4.076 24 C -0.110 4.110 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.127 4.127 29 C -0.191 4.191 30 H 0.107 0.893 31 H 0.221 0.779 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.109 5.250 -15.300 17.291 hybrid contribution -0.248 0.330 0.419 0.588 sum -6.357 5.580 -14.881 17.117 Atomic orbital electron populations 1.81099 1.12176 1.17700 1.10155 1.25352 0.91958 0.90698 0.92394 1.12736 0.81913 1.40294 0.98807 1.24347 0.92434 0.90964 0.91311 1.81063 1.08553 1.17178 1.12467 1.17150 0.90792 0.81170 0.80848 1.18902 0.89202 1.35397 1.06122 0.86962 1.26025 0.95061 0.95244 0.95397 1.69386 1.12398 1.31579 1.24917 0.86616 0.80652 0.79488 0.82317 1.16782 1.20847 1.16709 1.45315 1.07792 1.70273 1.12244 1.20834 0.95833 0.94948 0.83303 0.88547 1.22571 0.98101 0.95748 1.04113 1.22603 0.91722 0.99730 0.87493 1.87899 1.72821 1.24418 1.44484 1.20801 0.93949 0.83154 0.94809 0.91791 1.19627 0.95734 0.97716 0.94535 1.21015 0.99756 0.98372 0.91884 1.21163 0.95893 0.99051 0.98261 1.21155 0.97428 0.97388 0.98059 1.21092 0.99848 1.00098 0.92966 1.21037 0.94442 0.98491 0.98771 1.22515 0.96765 1.00818 0.98978 0.89309 0.77937 0.88917 0.90778 0.92729 0.88967 0.85486 0.86149 0.86296 0.86032 0.85877 0.89646 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.66 18.54 41.84 0.78 -10.88 16 2 C 0.30 6.55 14.10 -22.48 -0.32 6.23 16 3 C -0.32 -6.90 4.45 -104.94 -0.47 -7.37 16 4 C 0.32 7.67 10.46 -22.46 -0.23 7.44 16 5 N -0.51 -13.00 17.83 41.85 0.75 -12.26 16 6 C 0.42 8.19 5.45 -83.59 -0.46 7.73 16 7 C -0.46 -9.76 7.40 -38.33 -0.28 -10.04 16 8 H 0.11 2.39 7.04 -52.48 -0.37 2.02 16 9 C 0.11 2.48 4.63 -17.21 -0.08 2.40 16 10 N -0.76 -17.72 13.90 55.59 0.77 -16.94 16 11 Si 0.89 18.83 24.62 -169.99 -4.19 14.65 16 12 H -0.24 -5.68 5.83 56.52 0.33 -5.35 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.24 -4.99 7.11 56.52 0.40 -4.59 16 15 N -0.73 -11.84 4.45 -51.74 -0.23 -12.07 16 16 C 0.16 2.12 2.63 -67.74 -0.18 1.95 16 17 H 0.10 1.36 6.68 -51.93 -0.35 1.02 16 18 C -0.17 -2.17 5.77 -26.59 -0.15 -2.32 16 19 C 0.06 0.79 6.68 37.21 0.25 1.04 16 20 O -0.38 -5.02 9.72 -35.23 -0.34 -5.36 16 21 C 0.13 1.63 2.67 -27.83 -0.07 1.55 16 22 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 23 C -0.08 -0.90 4.97 -104.62 -0.52 -1.42 16 24 C -0.09 -1.02 9.36 -39.59 -0.37 -1.39 16 25 C -0.13 -1.21 10.05 -39.59 -0.40 -1.61 16 26 C -0.12 -1.14 10.05 -39.59 -0.40 -1.53 16 27 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 29 C -0.15 -1.79 5.05 -26.59 -0.13 -1.92 16 30 H 0.30 6.44 8.29 -40.82 -0.34 6.10 16 31 H 0.39 6.19 5.91 -40.82 -0.24 5.95 16 32 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 1.34 7.77 -52.48 -0.41 0.93 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -26.29 354.91 -6.80 -33.10 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.09 Total: 6.92 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -4.60 Total: -2.50 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 2.06 Total: -52.15 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.34 Total: -5.36 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.19 Total: 14.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.29 -6.80 -33.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256801951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.503 kcal (2) G-P(sol) polarization free energy of solvation -26.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds