Wall clock time and date at job start Tue Mar 31 2020 14:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48504 * 109.47289 * 270.00568 * 3 2 1 5 5 H 1.48503 * 109.47344 * 30.00235 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99985 * 3 2 1 7 7 C 1.37879 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99813 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00017 * 66.04236 * 10 9 7 12 12 C 1.50701 * 109.46981 * 199.54261 * 11 10 9 13 13 C 1.34512 * 125.78701 * 84.72386 * 12 11 10 14 14 C 1.41381 * 106.84094 * 179.88708 * 13 12 11 15 15 C 1.34515 * 106.83940 * 0.37056 * 14 13 12 16 16 O 1.34295 * 108.42235 * 359.76910 * 15 14 13 17 17 C 1.46897 * 111.00119 * 190.00322 * 10 9 7 18 18 C 1.50702 * 109.47342 * 75.82911 * 17 10 9 19 19 C 1.39414 * 119.51206 * 84.38182 * 18 17 10 20 20 C 1.36058 * 120.96503 * 180.02562 * 19 18 17 21 21 C 1.40592 * 119.71861 * 0.26894 * 20 19 18 22 22 N 1.33751 * 121.10024 * 180.28454 * 21 20 19 23 23 C 1.31339 * 119.70637 * 179.69142 * 22 21 20 24 24 C 1.39681 * 120.70871 * 359.74556 * 23 22 21 25 25 N 1.31328 * 120.70827 * 0.02562 * 24 23 22 26 26 C 1.33751 * 119.71062 * 359.97225 * 25 24 23 27 27 C 1.36058 * 119.51747 * 264.40157 * 18 17 10 28 28 H 0.97006 * 120.00118 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47277 * 60.00332 * 9 7 2 30 30 H 1.09001 * 109.47174 * 300.00074 * 9 7 2 31 31 H 1.08997 * 109.47748 * 319.55069 * 11 10 9 32 32 H 1.09003 * 109.46509 * 79.55014 * 11 10 9 33 33 H 1.07994 * 126.58149 * 0.02562 * 13 12 11 34 34 H 1.08004 * 126.58414 * 180.16624 * 14 13 12 35 35 H 1.08002 * 125.79185 * 179.75257 * 15 14 13 36 36 H 1.09002 * 109.46778 * 315.83165 * 17 10 9 37 37 H 1.09000 * 109.47369 * 195.83511 * 17 10 9 38 38 H 1.07994 * 119.51406 * 0.02562 * 19 18 17 39 39 H 1.08005 * 120.13909 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.64507 * 179.72521 * 23 22 21 41 41 H 1.07999 * 119.64199 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.14222 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9709 -3.6540 1.2527 12 6 4.2269 -4.4617 1.0497 13 6 5.3876 -3.9991 0.5515 14 6 6.2904 -5.0870 0.5389 15 6 5.6250 -6.1513 1.0225 16 8 4.3757 -5.7666 1.3304 17 6 1.5211 -4.8935 -0.2387 18 6 1.1646 -5.0080 -1.6985 19 6 2.1141 -5.4826 -2.6022 20 6 1.8242 -5.5974 -3.9266 21 6 0.5515 -5.2280 -4.3959 22 7 0.2349 -5.3348 -5.6911 23 6 -0.9643 -4.9874 -6.0988 24 6 -1.9157 -4.5121 -5.1933 25 7 -1.6300 -4.4025 -3.9161 26 6 -0.4156 -4.7499 -3.4763 27 6 -0.0791 -4.6462 -2.1152 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 3.2354 -2.6388 1.5481 32 1 2.3656 -4.1138 2.0340 33 1 5.5915 -2.9898 0.2258 34 1 7.3165 -5.0682 0.2022 35 1 6.0270 -7.1464 1.1426 36 1 0.6123 -4.9363 0.3616 37 1 2.1798 -5.7161 0.0400 38 1 3.0942 -5.7632 -2.2458 39 1 2.5698 -5.9671 -4.6149 40 1 -1.2174 -5.0699 -7.1455 41 1 -2.8965 -4.2309 -5.5474 42 1 -0.8044 -4.2803 -1.4035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308651105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:53 Heat of formation + Delta-G solvation = 72.517285 kcal Electronic energy + Delta-G solvation = -26436.227253 eV Core-core repulsion = 22768.453165 eV Total energy + Delta-G solvation = -3667.774088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.34587 -42.34164 -39.53205 -37.67813 -35.75568 -34.74621 -33.81503 -32.65823 -31.69725 -31.16894 -29.29776 -27.55893 -26.15281 -25.52949 -24.46014 -23.17231 -22.62120 -22.29756 -21.11931 -19.46178 -18.80197 -18.53761 -18.15885 -17.83832 -17.10415 -16.62661 -16.22844 -16.04196 -15.82656 -15.62340 -15.55450 -15.21123 -15.03727 -14.51197 -14.23310 -13.83168 -13.62338 -13.51109 -13.29028 -13.04692 -12.90237 -12.82654 -12.75075 -12.67083 -12.60551 -12.59779 -12.38659 -12.34217 -11.90606 -11.31179 -10.70992 -10.62233 -10.09383 -9.86293 -9.56149 -9.28213 -9.11836 -8.20638 -6.29710 -0.73814 -0.42046 0.89030 0.96363 1.39563 1.40470 1.51086 1.78901 1.88356 2.19630 2.39202 2.95910 3.12388 3.13481 3.20224 3.30783 3.47775 3.71059 3.85459 3.91080 4.04745 4.15861 4.20888 4.28211 4.29912 4.42176 4.48954 4.51737 4.62063 4.73056 4.84375 4.92829 5.03300 5.06744 5.14923 5.18963 5.24001 5.26701 5.34653 5.47845 5.63503 5.71879 5.74788 6.01577 6.20336 6.30153 6.35111 6.51643 6.76222 6.85225 7.39315 8.90132 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007894 B = 0.005157 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.226779 B = 5428.117725 C = 8089.892053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.520 4.520 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.527 5.527 11 C 0.142 3.858 12 C -0.011 4.011 13 C -0.206 4.206 14 C -0.223 4.223 15 C -0.041 4.041 16 O -0.192 6.192 17 C 0.090 3.910 18 C -0.045 4.045 19 C -0.070 4.070 20 C -0.090 4.090 21 C 0.057 3.943 22 N -0.445 5.445 23 C 0.080 3.920 24 C 0.076 3.924 25 N -0.463 5.463 26 C 0.058 3.942 27 C -0.092 4.092 28 H 0.263 0.737 29 H 0.014 0.986 30 H -0.032 1.032 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.241 0.759 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.223 0.777 41 H 0.214 0.786 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -14.502 -6.541 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.251 5.251 11 C 0.014 3.986 12 C -0.062 4.062 13 C -0.226 4.226 14 C -0.242 4.242 15 C -0.107 4.107 16 O -0.088 6.088 17 C -0.037 4.037 18 C -0.047 4.047 19 C -0.090 4.090 20 C -0.109 4.109 21 C -0.065 4.065 22 N -0.159 5.159 23 C -0.096 4.096 24 C -0.100 4.100 25 N -0.178 5.178 26 C -0.064 4.064 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.032 0.968 30 H -0.014 1.014 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.185 0.815 35 H 0.257 0.743 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.168 0.832 39 H 0.178 0.822 40 H 0.239 0.761 41 H 0.231 0.769 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.217 -14.514 -6.567 16.763 hybrid contribution -0.598 1.360 0.698 1.641 sum 4.619 -13.154 -5.870 15.127 Atomic orbital electron populations 1.70089 1.07646 1.27716 1.51704 1.25827 0.95608 1.02903 0.94966 0.85497 0.78897 0.78806 0.78150 1.20544 1.20871 1.18379 1.21432 0.93659 0.90846 1.49926 0.91615 1.19436 0.89931 0.88107 0.94183 1.61949 1.26970 1.02494 1.33666 1.20341 0.89123 0.98261 0.90836 1.22276 0.97655 0.81909 1.04320 1.21717 0.93808 1.01387 1.05725 1.22085 1.02098 0.92554 1.07421 1.24760 0.81486 1.01668 1.02828 1.83994 1.32766 1.25016 1.67067 1.21131 0.97954 0.93290 0.91327 1.19680 0.92547 0.95800 0.96702 1.20982 0.99391 0.96338 0.92273 1.20969 0.94379 0.99547 0.96007 1.19732 0.96196 1.00296 0.90325 1.68713 1.20023 1.13309 1.13892 1.24839 0.88323 0.92705 1.03732 1.24842 1.02929 0.93895 0.88306 1.68670 1.18041 1.12571 1.18477 1.19602 0.91433 0.99959 0.95410 1.20669 0.97534 0.99559 0.93509 0.92849 0.96819 1.01431 0.88224 0.93680 0.84525 0.81491 0.74303 0.94475 0.88530 0.83165 0.82154 0.76102 0.76904 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.52 -28.86 8.23 25.60 0.21 -28.65 16 8 H 0.07 3.55 7.31 -2.91 -0.02 3.53 16 9 C 0.21 10.87 4.54 85.56 0.39 11.26 16 10 N -0.53 -22.02 4.33 -909.94 -3.94 -25.97 16 11 C 0.14 5.36 5.33 85.56 0.46 5.82 16 12 C -0.01 -0.38 6.16 24.83 0.15 -0.23 16 13 C -0.21 -6.43 10.81 22.19 0.24 -6.19 16 14 C -0.22 -5.31 10.91 22.19 0.24 -5.07 16 15 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 16 O -0.19 -5.48 10.17 -2.44 -0.02 -5.51 16 17 C 0.09 3.25 4.92 85.56 0.42 3.67 16 18 C -0.04 -1.60 5.02 -20.09 -0.10 -1.71 16 19 C -0.07 -2.15 9.61 22.05 0.21 -1.94 16 20 C -0.09 -2.67 9.98 22.34 0.22 -2.45 16 21 C 0.06 1.91 6.59 40.30 0.27 2.17 16 22 N -0.45 -12.75 10.46 -188.08 -1.97 -14.72 16 23 C 0.08 1.69 11.21 85.12 0.95 2.64 16 24 C 0.08 1.80 11.21 85.12 0.95 2.75 16 25 N -0.46 -16.02 10.46 -188.09 -1.97 -17.98 16 26 C 0.06 2.17 6.59 40.30 0.27 2.44 16 27 C -0.09 -3.62 8.27 22.34 0.18 -3.44 16 28 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 29 H 0.01 0.79 6.30 -2.39 -0.02 0.77 16 30 H -0.03 -1.80 8.12 -2.39 -0.02 -1.82 16 31 H 0.10 4.12 6.58 -2.39 -0.02 4.10 16 32 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 33 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.24 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.04 1.36 7.87 -2.39 -0.02 1.35 16 37 H 0.10 3.05 6.87 -2.39 -0.02 3.03 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 40 H 0.22 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.12 4.89 7.94 -2.91 -0.02 4.86 16 Total: -1.00 -74.01 360.21 1.78 -72.23 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.04 Total: 19.68 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 6.34 Total: -18.21 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -7.60 Total: -114.58 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.02 Total: -5.51 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -74.01 1.78 -72.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308651105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.745 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds