Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38270 * 119.92632 * 2 1 4 4 C 1.38249 * 119.83085 * 179.97438 * 3 2 1 5 5 C 1.37884 * 120.22210 * 0.02671 * 4 3 2 6 6 C 1.39586 * 120.28222 * 359.66203 * 5 4 3 7 7 C 1.38142 * 119.92827 * 179.97438 * 2 1 3 8 8 C 1.51211 * 130.97191 * 0.02562 * 7 2 1 9 9 C 1.53740 * 104.58604 * 179.97438 * 8 7 2 10 10 N 1.39852 * 129.34229 * 179.63853 * 6 5 4 11 11 C 1.34774 * 124.97439 * 0.72693 * 10 6 5 12 12 O 1.21589 * 120.00333 * 359.72224 * 11 10 6 13 13 N 1.34773 * 120.00024 * 179.72457 * 11 10 6 14 14 C 1.39450 * 120.00035 * 184.97477 * 13 11 10 15 15 C 1.38652 * 119.64826 * 174.31506 * 14 13 11 16 16 C 1.40821 * 118.67436 * 180.27376 * 15 14 13 17 17 C 1.41546 * 120.99716 * 179.72136 * 16 15 14 18 18 H 1.08001 * 119.99809 * 26.46054 * 17 16 15 19 19 C 1.40027 * 119.99785 * 206.45871 * 17 16 15 20 20 N 1.30736 * 120.00548 * 9.31213 * 19 17 16 21 21 Si 1.86803 * 119.99796 * 189.31421 * 19 17 16 22 22 H 1.48500 * 109.47244 * 84.99016 * 21 19 17 23 23 H 1.48500 * 109.47371 * 204.99651 * 21 19 17 24 24 H 1.48506 * 109.46912 * 324.99552 * 21 19 17 25 25 C 1.41168 * 118.00257 * 359.43990 * 16 15 14 26 26 C 1.36592 * 119.12637 * 0.55763 * 25 16 15 27 27 N 1.32060 * 121.26066 * 359.70536 * 26 25 16 28 28 H 1.09005 * 109.46719 * 270.02043 * 1 2 3 29 29 H 1.09004 * 109.47301 * 30.01959 * 1 2 3 30 30 H 1.08996 * 109.47050 * 150.02183 * 1 2 3 31 31 H 1.08008 * 120.08299 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.89334 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.85825 * 179.97438 * 5 4 3 34 34 H 1.08999 * 110.41588 * 61.22144 * 8 7 2 35 35 H 1.09001 * 110.51609 * 298.82318 * 8 7 2 36 36 H 1.09004 * 110.29828 * 241.06256 * 9 8 7 37 37 H 1.09007 * 110.37682 * 118.97176 * 9 8 7 38 38 H 0.96998 * 119.99887 * 4.96568 * 13 11 10 39 39 H 1.08000 * 120.65976 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00766 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.43246 * 180.30602 * 25 16 15 42 42 H 1.08006 * 119.36531 * 179.72111 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1983 0.0000 4 6 3.5793 1.1960 0.0005 5 6 4.2713 0.0035 0.0005 6 6 3.5821 -1.2103 0.0071 7 6 2.1962 -1.1972 0.0005 8 6 1.7014 -2.6261 0.0007 9 6 2.9807 -3.4788 0.0007 10 7 4.0847 -2.5154 0.0014 11 6 5.3929 -2.8394 0.0020 12 8 6.2362 -1.9635 0.0026 13 7 5.7665 -4.1343 0.0018 14 6 7.1156 -4.4709 0.1070 15 6 7.4832 -5.8025 0.2253 16 6 8.8509 -6.1188 0.3361 17 6 9.2806 -7.4612 0.4651 18 1 8.6748 -8.2626 0.0684 19 6 10.4911 -7.7503 1.1068 20 7 11.1343 -6.8076 1.7447 21 14 11.1871 -9.4829 1.0514 22 1 11.9703 -9.6621 -0.1975 23 1 12.0707 -9.6993 2.2252 24 1 10.0735 -10.4649 1.0825 25 6 9.7810 -5.0571 0.3087 26 6 9.3237 -3.7756 0.1886 27 7 8.0327 -3.5148 0.0924 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6569 2.1338 0.0004 32 1 4.1191 2.1314 0.0001 33 1 5.3514 0.0085 0.0005 34 1 1.1126 -2.8247 -0.8949 35 1 1.1110 -2.8258 0.8949 36 1 3.0209 -4.1002 -0.8940 37 1 3.0220 -4.1011 0.8947 38 1 5.0968 -4.8322 -0.0715 39 1 6.7350 -6.5814 0.2370 40 1 11.9730 -7.0077 2.1890 41 1 10.8398 -5.2553 0.3858 42 1 10.0317 -2.9601 0.1718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311072492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = 44.710748 kcal Electronic energy + Delta-G solvation = -25900.865186 eV Core-core repulsion = 22231.885316 eV Total energy + Delta-G solvation = -3668.979870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17956 -39.35410 -37.96381 -36.34349 -34.63012 -33.67155 -33.14379 -30.90328 -30.69107 -29.41677 -28.30267 -26.62705 -26.03799 -23.77393 -22.90529 -21.83678 -21.26624 -21.18684 -19.39147 -18.06940 -17.51301 -16.38115 -16.36631 -15.72442 -15.58359 -15.25656 -15.01646 -14.56513 -14.28611 -14.10025 -13.78714 -13.72465 -13.26589 -13.04857 -12.78281 -12.68674 -12.45869 -12.37294 -12.34389 -12.18653 -11.92500 -11.58009 -11.44718 -11.28638 -11.01481 -10.90546 -10.41405 -10.17009 -10.06029 -9.81179 -9.62607 -9.45093 -8.60154 -8.04911 -7.79137 -7.72016 -7.08048 -6.78943 -4.66698 1.34513 1.41179 2.55568 2.66038 2.74457 3.00357 3.02958 3.19113 3.55748 3.82340 3.88218 3.95860 4.36084 4.45011 4.66900 4.83794 4.84881 4.92411 5.15532 5.25910 5.31749 5.41714 5.47498 5.53038 5.63830 5.65602 5.70395 5.71959 5.83949 6.02401 6.20523 6.45397 6.49539 6.54149 6.56576 6.63239 6.74333 6.88276 7.04716 7.11150 7.21652 7.38001 7.48575 7.84553 7.93071 8.16210 8.43422 8.68051 8.71483 8.89976 9.66043 10.07413 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032046 B = 0.002501 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.535995 B =11192.741610 C =11942.931992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.154 4.154 4 C -0.088 4.088 5 C -0.141 4.141 6 C 0.183 3.817 7 C -0.151 4.151 8 C -0.078 4.078 9 C 0.094 3.906 10 N -0.573 5.573 11 C 0.702 3.298 12 O -0.505 6.505 13 N -0.661 5.661 14 C 0.362 3.638 15 C -0.302 4.302 16 C 0.146 3.854 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.791 5.791 21 Si 0.917 3.083 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.220 4.220 26 C 0.105 3.895 27 N -0.553 5.553 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.404 0.596 39 H 0.102 0.898 40 H 0.283 0.717 41 H 0.132 0.868 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 6.867 -2.308 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.048 4.048 3 C -0.174 4.174 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.086 3.914 7 C -0.155 4.155 8 C -0.115 4.115 9 C -0.028 4.028 10 N -0.300 5.300 11 C 0.403 3.597 12 O -0.374 6.374 13 N -0.309 5.309 14 C 0.133 3.867 15 C -0.328 4.328 16 C 0.138 3.862 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.416 5.416 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.243 4.243 26 C -0.046 4.046 27 N -0.272 5.272 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.239 0.761 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.138 8.335 -2.229 19.187 hybrid contribution 0.354 -2.145 0.184 2.182 sum -16.784 6.189 -2.045 18.006 Atomic orbital electron populations 1.20744 0.91280 1.02578 1.02185 1.19072 0.95498 0.91136 0.99101 1.20826 0.94170 0.96924 1.05452 1.20893 0.94019 0.97344 0.98363 1.21046 1.01777 0.89611 1.03735 1.18129 0.91848 0.84623 0.96760 1.19715 0.92284 0.94595 1.08863 1.20973 0.96538 0.90504 1.03458 1.22148 0.85485 0.92379 1.02823 1.45255 1.05042 1.05375 1.74375 1.15770 0.80564 0.84147 0.79195 1.91008 1.47853 1.46593 1.51922 1.42560 1.07339 1.05649 1.75393 1.17740 0.82216 0.89737 0.96977 1.21171 0.96947 0.92659 1.22055 1.17599 0.89432 0.93852 0.85330 1.19558 1.03758 0.92636 1.32583 0.90114 1.25970 0.95951 0.99633 0.92860 1.69740 1.14181 1.34397 1.23298 0.86185 0.79408 0.81590 0.78717 1.19093 1.20171 1.18603 1.22099 1.01522 0.92507 1.08187 1.21634 0.90466 0.95481 0.97000 1.67168 1.01448 1.34623 1.23965 0.91242 0.91586 0.91691 0.86036 0.85684 0.83965 0.89412 0.89380 0.90139 0.90059 0.76135 0.88009 0.90581 0.85002 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.88 36.00 0.36 -0.45 16 2 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 3 C -0.15 -1.67 9.71 -39.57 -0.38 -2.05 16 4 C -0.09 -1.09 10.02 -39.71 -0.40 -1.49 16 5 C -0.14 -2.21 9.46 -39.21 -0.37 -2.58 16 6 C 0.18 2.82 6.62 -83.56 -0.55 2.26 16 7 C -0.15 -1.83 6.07 -104.28 -0.63 -2.46 16 8 C -0.08 -0.69 6.33 -27.25 -0.17 -0.87 16 9 C 0.09 0.99 6.33 -3.64 -0.02 0.97 16 10 N -0.57 -8.97 3.13 -118.25 -0.37 -9.34 16 11 C 0.70 13.95 8.39 -86.92 -0.73 13.22 16 12 O -0.51 -12.04 12.77 5.29 0.07 -11.97 16 13 N -0.66 -12.72 5.34 -15.86 -0.08 -12.81 16 14 C 0.36 8.59 7.42 -154.68 -1.15 7.45 16 15 C -0.30 -7.23 9.74 -38.45 -0.37 -7.60 16 16 C 0.15 3.83 5.60 -106.55 -0.60 3.23 16 17 C -0.45 -11.55 9.13 -37.65 -0.34 -11.90 16 18 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 19 C 0.07 1.80 5.32 -17.35 -0.09 1.71 16 20 N -0.79 -19.79 10.70 55.55 0.59 -19.20 16 21 Si 0.92 17.92 29.57 -169.99 -5.03 12.89 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 C -0.22 -5.72 8.73 -39.06 -0.34 -6.06 16 26 C 0.10 2.63 11.10 -18.05 -0.20 2.43 16 27 N -0.55 -14.34 7.86 -12.76 -0.10 -14.44 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 7.70 -51.93 -0.40 0.01 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.58 6.28 -52.48 -0.33 2.25 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.40 6.05 7.64 -40.82 -0.31 5.74 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.28 6.43 8.29 -40.82 -0.34 6.10 16 41 H 0.13 3.47 6.12 -52.49 -0.32 3.14 16 42 H 0.12 2.79 8.06 -52.48 -0.42 2.37 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -32.43 351.33 -11.38 -43.80 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.13 Total: 11.07 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -6.62 Total: -5.30 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.04 Total: -55.79 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.43 -11.38 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311072492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.516 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds