Wall clock time and date at job start Tue Mar 31 2020 14:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38270 * 119.92632 * 2 1 4 4 C 1.38249 * 119.83085 * 179.97438 * 3 2 1 5 5 C 1.37884 * 120.22210 * 0.02671 * 4 3 2 6 6 C 1.39586 * 120.28222 * 359.66203 * 5 4 3 7 7 C 1.38142 * 119.92827 * 179.97438 * 2 1 3 8 8 C 1.51211 * 130.97191 * 0.02562 * 7 2 1 9 9 C 1.53740 * 104.58604 * 179.97438 * 8 7 2 10 10 N 1.39852 * 129.34229 * 179.63853 * 6 5 4 11 11 C 1.34774 * 124.97439 * 0.72693 * 10 6 5 12 12 O 1.21589 * 120.00333 * 359.72224 * 11 10 6 13 13 N 1.34773 * 120.00024 * 179.72457 * 11 10 6 14 14 C 1.39450 * 120.00035 * 184.97477 * 13 11 10 15 15 C 1.38652 * 119.64826 * 174.31506 * 14 13 11 16 16 C 1.40821 * 118.67436 * 180.27376 * 15 14 13 17 17 C 1.41546 * 120.99716 * 179.72136 * 16 15 14 18 18 H 1.08001 * 119.99809 * 26.46054 * 17 16 15 19 19 C 1.40027 * 119.99785 * 206.45871 * 17 16 15 20 20 N 1.30736 * 120.00548 * 9.31213 * 19 17 16 21 21 Si 1.86803 * 119.99796 * 189.31421 * 19 17 16 22 22 H 1.48500 * 109.47244 * 84.99016 * 21 19 17 23 23 H 1.48500 * 109.47371 * 204.99651 * 21 19 17 24 24 H 1.48506 * 109.46912 * 324.99552 * 21 19 17 25 25 C 1.41168 * 118.00257 * 359.43990 * 16 15 14 26 26 C 1.36592 * 119.12637 * 0.55763 * 25 16 15 27 27 N 1.32060 * 121.26066 * 359.70536 * 26 25 16 28 28 H 1.09005 * 109.46719 * 270.02043 * 1 2 3 29 29 H 1.09004 * 109.47301 * 30.01959 * 1 2 3 30 30 H 1.08996 * 109.47050 * 150.02183 * 1 2 3 31 31 H 1.08008 * 120.08299 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.89334 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.85825 * 179.97438 * 5 4 3 34 34 H 1.08999 * 110.41588 * 61.22144 * 8 7 2 35 35 H 1.09001 * 110.51609 * 298.82318 * 8 7 2 36 36 H 1.09004 * 110.29828 * 241.06256 * 9 8 7 37 37 H 1.09007 * 110.37682 * 118.97176 * 9 8 7 38 38 H 0.96998 * 119.99887 * 4.96568 * 13 11 10 39 39 H 1.08000 * 120.65976 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00766 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.43246 * 180.30602 * 25 16 15 42 42 H 1.08006 * 119.36531 * 179.72111 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1983 0.0000 4 6 3.5793 1.1960 0.0005 5 6 4.2713 0.0035 0.0005 6 6 3.5821 -1.2103 0.0071 7 6 2.1962 -1.1972 0.0005 8 6 1.7014 -2.6261 0.0007 9 6 2.9807 -3.4788 0.0007 10 7 4.0847 -2.5154 0.0014 11 6 5.3929 -2.8394 0.0020 12 8 6.2362 -1.9635 0.0026 13 7 5.7665 -4.1343 0.0018 14 6 7.1156 -4.4709 0.1070 15 6 7.4832 -5.8025 0.2253 16 6 8.8509 -6.1188 0.3361 17 6 9.2806 -7.4612 0.4651 18 1 8.6748 -8.2626 0.0684 19 6 10.4911 -7.7503 1.1068 20 7 11.1343 -6.8076 1.7447 21 14 11.1871 -9.4829 1.0514 22 1 11.9703 -9.6621 -0.1975 23 1 12.0707 -9.6993 2.2252 24 1 10.0735 -10.4649 1.0825 25 6 9.7810 -5.0571 0.3087 26 6 9.3237 -3.7756 0.1886 27 7 8.0327 -3.5148 0.0924 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6569 2.1338 0.0004 32 1 4.1191 2.1314 0.0001 33 1 5.3514 0.0085 0.0005 34 1 1.1126 -2.8247 -0.8949 35 1 1.1110 -2.8258 0.8949 36 1 3.0209 -4.1002 -0.8940 37 1 3.0220 -4.1011 0.8947 38 1 5.0968 -4.8322 -0.0715 39 1 6.7350 -6.5814 0.2370 40 1 11.9730 -7.0077 2.1890 41 1 10.8398 -5.2553 0.3858 42 1 10.0317 -2.9601 0.1718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311072492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:25 Heat of formation + Delta-G solvation = 27.265368 kcal Electronic energy + Delta-G solvation = -25901.621674 eV Core-core repulsion = 22231.885316 eV Total energy + Delta-G solvation = -3669.736359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35970 -40.85547 -39.57095 -37.46039 -36.37362 -35.44000 -34.07339 -32.62384 -32.02452 -30.43263 -29.90290 -27.95905 -27.39851 -25.05774 -23.91712 -23.70738 -22.75515 -22.19353 -20.86236 -19.78045 -18.85101 -17.88821 -17.45292 -17.22260 -16.76166 -16.51954 -16.43459 -16.04061 -15.83828 -15.74042 -15.15666 -14.78093 -14.45821 -14.32414 -14.26054 -14.21328 -13.63746 -13.32769 -13.23246 -13.03401 -12.96132 -12.89513 -12.87535 -12.79876 -12.40386 -12.10613 -11.89249 -11.79380 -11.61107 -11.29208 -11.21064 -11.13261 -10.00007 -9.69348 -9.50309 -9.05774 -8.70246 -8.59551 -6.61741 0.33848 0.41822 0.80003 0.95981 1.24202 1.41058 1.54263 1.56840 2.07961 2.19177 2.67119 2.79244 2.86222 3.50474 3.58509 3.70739 4.00123 4.04495 4.13182 4.14061 4.27367 4.45357 4.53554 4.57731 4.66168 4.74259 4.77039 4.87910 4.92058 4.93653 4.99565 5.01469 5.04757 5.21788 5.25083 5.29346 5.45337 5.52458 5.57151 5.60766 5.67692 5.86949 5.92782 6.13697 6.16914 6.48291 6.65139 6.77406 6.80347 7.35017 7.79640 8.26899 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032046 B = 0.002501 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.535995 B =11192.741610 C =11942.931992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.047 4.047 3 C -0.147 4.147 4 C -0.094 4.094 5 C -0.175 4.175 6 C 0.141 3.859 7 C -0.145 4.145 8 C -0.069 4.069 9 C 0.081 3.919 10 N -0.571 5.571 11 C 0.696 3.304 12 O -0.557 6.557 13 N -0.649 5.649 14 C 0.361 3.639 15 C -0.307 4.307 16 C 0.118 3.882 17 C -0.478 4.478 18 H 0.090 0.910 19 C 0.032 3.968 20 N -0.820 5.820 21 Si 0.994 3.006 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.253 1.253 25 C -0.239 4.239 26 C 0.097 3.903 27 N -0.582 5.582 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.424 0.576 39 H 0.127 0.873 40 H 0.292 0.708 41 H 0.122 0.878 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.470 5.625 -2.358 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.048 4.048 3 C -0.166 4.166 4 C -0.113 4.113 5 C -0.197 4.197 6 C 0.045 3.955 7 C -0.148 4.148 8 C -0.106 4.106 9 C -0.039 4.039 10 N -0.298 5.298 11 C 0.398 3.602 12 O -0.430 6.430 13 N -0.299 5.299 14 C 0.131 3.869 15 C -0.334 4.334 16 C 0.110 3.890 17 C -0.508 4.508 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.446 5.446 21 Si 0.814 3.186 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.177 1.177 25 C -0.262 4.262 26 C -0.053 4.053 27 N -0.302 5.302 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.262 0.738 39 H 0.145 0.855 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.835 7.097 -2.284 22.129 hybrid contribution 1.353 -1.619 0.213 2.121 sum -19.482 5.479 -2.071 20.344 Atomic orbital electron populations 1.20825 0.88099 1.04127 1.03429 1.19594 0.97693 0.90361 0.97137 1.21258 0.93293 0.98682 1.03366 1.21096 0.95268 0.96696 0.98229 1.20976 1.00212 0.91779 1.06701 1.18501 0.93589 0.84153 0.99276 1.20140 0.90677 0.96871 1.07131 1.21106 0.95859 0.87648 1.05990 1.22605 0.84546 0.92186 1.04572 1.45185 1.04319 1.06884 1.73454 1.15957 0.81846 0.83567 0.78866 1.90976 1.50084 1.47810 1.54114 1.42338 1.06147 1.06391 1.75033 1.17986 0.83575 0.89588 0.95709 1.21360 0.96812 0.93344 1.21837 1.18019 0.90552 0.94520 0.85919 1.19897 1.05072 0.92579 1.33281 0.89167 1.26942 0.95633 1.04089 0.91728 1.69809 1.14668 1.36731 1.23391 0.85023 0.78719 0.75914 0.78915 1.18546 1.19416 1.17666 1.22058 1.01155 0.93054 1.09943 1.21873 0.90911 0.95789 0.96721 1.67268 1.01930 1.35768 1.25211 0.89933 0.90077 0.90248 0.82784 0.84307 0.88050 0.86641 0.86844 0.88194 0.88584 0.73768 0.85478 0.89749 0.85995 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.88 71.24 0.70 -0.35 16 2 C -0.05 -0.86 5.88 -19.88 -0.12 -0.98 16 3 C -0.15 -2.84 9.71 22.28 0.22 -2.62 16 4 C -0.09 -2.38 10.02 22.19 0.22 -2.15 16 5 C -0.18 -5.91 9.46 22.51 0.21 -5.70 16 6 C 0.14 4.38 6.62 38.27 0.25 4.64 16 7 C -0.14 -3.18 6.07 -19.64 -0.12 -3.30 16 8 C -0.07 -0.97 6.33 30.26 0.19 -0.78 16 9 C 0.08 1.53 6.33 86.62 0.55 2.08 16 10 N -0.57 -18.03 3.13 -646.31 -2.02 -20.05 16 11 C 0.70 28.81 8.39 179.06 1.50 30.31 16 12 O -0.56 -28.53 12.77 -4.00 -0.05 -28.58 16 13 N -0.65 -25.36 5.34 -322.37 -1.72 -27.08 16 14 C 0.36 17.63 7.42 132.77 0.98 18.62 16 15 C -0.31 -14.93 9.74 23.00 0.22 -14.70 16 16 C 0.12 6.36 5.60 -21.11 -0.12 6.24 16 17 C -0.48 -24.49 9.13 23.52 0.21 -24.28 16 18 H 0.09 4.31 7.86 -2.91 -0.02 4.28 16 19 C 0.03 1.56 5.32 85.29 0.45 2.01 16 20 N -0.82 -41.73 10.70 21.84 0.23 -41.50 16 21 Si 0.99 36.07 29.57 68.60 2.03 38.10 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 24 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 25 C -0.24 -12.98 8.73 22.60 0.20 -12.78 16 26 C 0.10 5.17 11.10 84.27 0.94 6.10 16 27 N -0.58 -31.66 7.86 -194.27 -1.53 -33.19 16 28 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 30 H 0.08 0.59 7.70 -2.39 -0.02 0.57 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.10 4.18 6.28 -2.91 -0.02 4.16 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.42 12.37 7.64 -92.71 -0.71 11.66 16 39 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 40 H 0.29 13.36 8.29 -92.71 -0.77 12.60 16 41 H 0.12 6.75 6.12 -2.91 -0.02 6.73 16 42 H 0.14 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -76.09 351.33 3.80 -72.29 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.36 Total: 37.65 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.51 Total: 2.35 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -5.04 Total: -121.81 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -76.09 3.80 -72.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311072492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.552 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds